View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4350-Insertion-6 (Length: 383)
Name: NF4350-Insertion-6
Description: NF4350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4350-Insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 43449624 - 43449799
Alignment:
| Q |
8 |
ctccgttacactaccgcattcatcaccggcgttattcatcaatcacaactccgtcgccacctcattgaaactctccaccgagaaactccaatcaccaatc |
107 |
Q |
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| T |
43449624 |
ctccgttacactaccgcattcatcaccggcgttattcatcaatcacaactccgtcgccacctcattgaaactctccaccgagaaactccaatcaccaatc |
43449723 |
T |
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| Q |
108 |
aagtaaccttaaaacaactcaacctcgcctcagaagctctcgaaagcgccgtttccaactccagctccgccattcg |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43449724 |
aagtaaccttaaaacaactcaacctcgcctcagaagctctcgaaagcgccgtttccaactccagctccgccattcg |
43449799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 276 - 383
Target Start/End: Original strand, 43449892 - 43449999
Alignment:
| Q |
276 |
gtaaccacgccgaagaatctgccatcattctcctcagaatctttcattccaatccttcactcgctcgatctgaaatagcaccgtctctctacgagcatct |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43449892 |
gtaaccacgccgaagaatctgccatcattctcctcagaatctttcattccaatccttcactcgctcgatctgaaatagcaccgtctctctacgagcatct |
43449991 |
T |
|
| Q |
376 |
tttttgtt |
383 |
Q |
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|||||||| |
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| T |
43449992 |
tttttgtt |
43449999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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