View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4350_high_1 (Length: 409)

Name: NF4350_high_1
Description: NF4350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4350_high_1
NF4350_high_1
[»] chr1 (9 HSPs)
chr1 (17-275)||(14703858-14704108)
chr1 (47-259)||(4568221-4568433)
chr1 (29-223)||(49041080-49041275)
chr1 (293-396)||(4569004-4569107)
chr1 (59-192)||(4566822-4566956)
chr1 (294-394)||(14704165-14704265)
chr1 (306-400)||(49042391-49042479)
chr1 (348-396)||(49058280-49058328)
chr1 (17-59)||(4568162-4568204)
[»] chr3 (4 HSPs)
chr3 (302-396)||(9764028-9764122)
chr3 (297-396)||(9778481-9778580)
chr3 (348-396)||(9770168-9770216)
chr3 (343-396)||(9784186-9784239)
[»] chr7 (1 HSPs)
chr7 (348-396)||(22642651-22642699)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 14703858 - 14704108
Alignment:
Q  17 tattatacatcaaaaattacacatgtaaataacaaagatggatgtacaacttaattgtatatggttgcaatgaataatagttacgtttgtaatatttatt 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14703858 tattatacatcgaaaattacacatgtaaataacaaagatggatgtatgacttaattgtatatggttgcaatgaataatagttacgtttgtaatatttatt 14703957  T
Q  117 tcagcataggaatagaatcaaagtgttattttatcattgtttttcatgctg-ttgtatgtccagcctatttattataaaagagccatagataattagaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||         |||    
T  14703958 tcagcataggaatagaatcaaagtgttattttatcattgtttttcatgctgtttgtatgtccagcctatttattataaaagagccata---------aat 14704048  T
Q  216 atgatgttttttgttgttgaaagaattggaatataatgttgtctgtggtaaaatttgctt 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14704049 atgatgttttttgttgttgaaagaattggaatataatgttgtctgtggtaaaatttgctt 14704108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 47 - 259
Target Start/End: Original strand, 4568221 - 4568433
Alignment:
Q  47 aacaaagatggatgtacaacttaattgtatatggttgcaatgaataatagttacgtttgtaatatttatttcagcataggaatagaatcaaagtgttatt 146  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  4568221 aacaaagatggatgtacgacttaattgtatatgattgcaatgaataatagttacgtttgtaatatttattttatcataggaatagaatcaaagtgttatt 4568320  T
Q  147 ttatcattgtttttcatgctgt-tgtatgtccagcctatttattataaaagagccatagataattagaatatgatgttttttgttgttgaaagaattgga 245  Q
    |||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  4568321 ttatcattgtttttcatgctgtatgtatgaccaacctatttattataaaagagccatagataattagaatatgatg-tttttgttgttgaaagaattaga 4568419  T
Q  246 atataatgttgtct 259  Q
    ||||||||||||||    
T  4568420 atataatgttgtct 4568433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 49041080 - 49041275
Alignment:
Q  29 aaaattacacatgtaaataacaaagatggatgtacaacttaattgtatatggttgcaatgaataatagttacgtttgtaatatttatttcagcataggaa 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| || |||||||| |||||||||||||||||||||    
T  49041080 aaaattacacatgtaaataacaaagatggatgtacaacttaattgtatatgattgcaatgaaaaattgtcacgtttgtgatatttatttcagcataggaa 49041179  T
Q  129 tagaatcaaagtgttattttatcattgtttttcatgctg-ttgtatgtccagcctatttattataaaagagccatagataattagaatatgatgtt 223  Q
    |||||||||||| |||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||| ||| ||||||    
T  49041180 tagaatcaaagttttattttatctttgtttttcatgctgtttgtatgaccagcctatttattataaaagagccgtagataattagcatacgatgtt 49041275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 293 - 396
Target Start/End: Original strand, 4569004 - 4569107
Alignment:
Q  293 actattttgaatattttcacacgtgattcattcatactatgcattaagtaattagcacacaccggccacacaattcattggtaaattaacatcagaaatg 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4569004 actattttgaatattttcacacgtgattcattcatactatgcattaagtaattagcacacaccggccacacaattcgttggtaaattaacatcagaaatg 4569103  T
Q  393 agaa 396  Q
    ||||    
T  4569104 agaa 4569107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 59 - 192
Target Start/End: Original strand, 4566822 - 4566956
Alignment:
Q  59 tgtacaacttaattgtatatggttgcaatgaataatagttacgtttgtaatatttatttcagcataggaatagaatcaaagtgttattttatcattgttt 158  Q
    ||||| ||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  4566822 tgtacgacttaattgtatgaggttgcaatgaaaaatagttacgtttgtaatatttatttcagcataggaatagaatctaagtgtcattttatcattgttt 4566921  T
Q  159 ttcatgctg-ttgtatgtccagcctatttattata 192  Q
    ||||||||| ||||||| |||||| ||||||||||    
T  4566922 ttcatgctgattgtatgaccagccaatttattata 4566956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 294 - 394
Target Start/End: Original strand, 14704165 - 14704265
Alignment:
Q  294 ctattttgaatattttcacacgtgattcattcatactatgcattaagtaattagcacacaccggccacacaattcattggtaaattaacatcagaaatga 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |||||||||||||    
T  14704165 ctattttgaatattttcacacgtgattcattcatactatgcattaagtaattagcacacaccggccacaaaattcgttggtgaatttacatcagaaatga 14704264  T
Q  394 g 394  Q
    |    
T  14704265 g 14704265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 306 - 400
Target Start/End: Original strand, 49042391 - 49042479
Alignment:
Q  306 ttttcacacgtgattcattcatactatgcattaagtaattagcacacaccggccacacaattcattggtaaattaacatcagaaatgagaataat 400  Q
    |||||||||||||||||||||||   |||||||||    || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49042391 ttttcacacgtgattcattcata---tgcattaagc---taacacacaccggccacacaattcattggtaaattaacatcagaaatgagaataat 49042479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 49058280 - 49058328
Alignment:
Q  348 cacacaccggccacacaattcattggtaaattaacatcagaaatgagaa 396  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  49058280 cacacaccggccacacacttcattggtaaattaacatcagaattgagaa 49058328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 4568162 - 4568204
Alignment:
Q  17 tattatacatcaaaaattacacatgtaaataacaaagatggat 59  Q
    ||||||||||| |||||||||||||||||||| ||||||||||    
T  4568162 tattatacatcgaaaattacacatgtaaataataaagatggat 4568204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 302 - 396
Target Start/End: Complemental strand, 9764122 - 9764028
Alignment:
Q  302 aatattttcacacgtgattcattcata-ctatgcattaagtaattagcacacaccggccacacaattcattggtaaattaacatcagaaatgagaa 396  Q
    ||||||||||||||||||||||||||| | ||  ||  | |||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  9764122 aatattttcacacgtgattcattcatatccata-atgcactaattaacacacaccggccacacacttcattggtaaattaacattagaaatgagaa 9764028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 396
Target Start/End: Complemental strand, 9778580 - 9778481
Alignment:
Q  297 ttttgaatattttcacacgtgattcattcata-ctatgcattaagtaattagcacacaccggccacacaattcattggtaaattaacatcagaaatgaga 395  Q
    |||| ||||||||||||||||||||||||||| | ||  ||  | || ||| ||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  9778580 ttttcaatattttcacacgtgattcattcatatccata-atgcattagttaacacacaccggccacacacttcattggtaaattaacattagaaatgaga 9778482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 396
Target Start/End: Complemental strand, 9770216 - 9770168
Alignment:
Q  348 cacacaccggccacacaattcattggtaaattaacatcagaaatgagaa 396  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  9770216 cacacaccggccacacacttcattggtaaattaacattagaaatgagaa 9770168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 343 - 396
Target Start/End: Complemental strand, 9784239 - 9784186
Alignment:
Q  343 attagcacacaccggccacacaattcattggtaaattaacatcagaaatgagaa 396  Q
    |||| ||||||||||||||||| |||| |||||||||||||| |||||||||||    
T  9784239 attaacacacaccggccacacacttcaatggtaaattaacattagaaatgagaa 9784186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 22642651 - 22642699
Alignment:
Q  348 cacacaccggccacacaattcattggtaaattaacatcagaaatgagaa 396  Q
    ||||||||||||||||| || ||||||||||||||||||||| ||||||    
T  22642651 cacacaccggccacacactttattggtaaattaacatcagaattgagaa 22642699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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