View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4350_high_2 (Length: 398)
Name: NF4350_high_2
Description: NF4350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4350_high_2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 398
Target Start/End: Original strand, 41211523 - 41211902
Alignment:
| Q |
18 |
gaagtgaatgatgagttactatgtttctatcgtaataatcatgactcaggttaccatcaacttgtttatgaaggtgttgatgagaagggagtggcactaa |
117 |
Q |
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| T |
41211523 |
gaagtgaatgatgagttactatgtttctatcgtaataatcatgactcaggttaccatcaacttgtttatgaaggttttgatgagaagggagtggcactaa |
41211622 |
T |
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| Q |
118 |
gagaaagtttgtctcactacttgactggaaggttgcacacatgaattttttgtccatcattgctagcatttggtatagcttaaaaatttaagtggaattg |
217 |
Q |
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| T |
41211623 |
gagaaagtttgtctcactacttgactggaaggttgcacacat-aattttttgtccatcattgctagcatttggtatagcttaaaaatttaagtggaattg |
41211721 |
T |
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| Q |
218 |
aatcatgaaagattataagaaaacatagtatagtatgatatagttgctcctctttgatttctagattgtaaataatttggatgatgcctgtgtacatttt |
317 |
Q |
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| T |
41211722 |
aatcatgaaagattataagaaaacatagtatagtatgatatagttgctcctctttgatttctagactgtaaataatttggatgatgcctgtgtacatttt |
41211821 |
T |
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| Q |
318 |
accaaattataattttgaggattggagtggtaaactcgcattataatactgatcatagatttgttgctggagtaaaggttg |
398 |
Q |
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| T |
41211822 |
accaaattataattttgaggattggagtggtaaactcgcattataatactgatcatagatttgttgctggagtaaaggttg |
41211902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 41201474 - 41201608
Alignment:
| Q |
18 |
gaagtgaatgatgagttactatgtttctatcgtaataatcatgactcaggttaccatcaacttgtttatgaaggtgttgatgagaagggagtggcactaa |
117 |
Q |
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|||||||| ||||| || || | ||| |||| ||||||||||||||| || |||||||||||| ||| ||||||||||||||||| |||||||||||||| |
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| T |
41201474 |
gaagtgaaggatgaattgctctatttgtatcataataatcatgactctgggtaccatcaacttatttgtgaaggtgttgatgagatgggagtggcactaa |
41201573 |
T |
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| Q |
118 |
gagaaagtttgtctcactacttgactggaaggttg |
152 |
Q |
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| T |
41201574 |
gagaaagtttgtctcactacttgaatggaaggttg |
41201608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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