View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4350_low_2 (Length: 409)
Name: NF4350_low_2
Description: NF4350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4350_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 14703858 - 14704108
Alignment:
Q |
17 |
tattatacatcaaaaattacacatgtaaataacaaagatggatgtacaacttaattgtatatggttgcaatgaataatagttacgtttgtaatatttatt |
116 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
14703858 |
tattatacatcgaaaattacacatgtaaataacaaagatggatgtatgacttaattgtatatggttgcaatgaataatagttacgtttgtaatatttatt |
14703957 |
T |
|
Q |
117 |
tcagcataggaatagaatcaaagtgttattttatcattgtttttcatgctg-ttgtatgtccagcctatttattataaaagagccatagataattagaat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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T |
14703958 |
tcagcataggaatagaatcaaagtgttattttatcattgtttttcatgctgtttgtatgtccagcctatttattataaaagagccata---------aat |
14704048 |
T |
|
Q |
216 |
atgatgttttttgttgttgaaagaattggaatataatgttgtctgtggtaaaatttgctt |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
14704049 |
atgatgttttttgttgttgaaagaattggaatataatgttgtctgtggtaaaatttgctt |
14704108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 47 - 259
Target Start/End: Original strand, 4568221 - 4568433
Alignment:
Q |
47 |
aacaaagatggatgtacaacttaattgtatatggttgcaatgaataatagttacgtttgtaatatttatttcagcataggaatagaatcaaagtgttatt |
146 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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T |
4568221 |
aacaaagatggatgtacgacttaattgtatatgattgcaatgaataatagttacgtttgtaatatttattttatcataggaatagaatcaaagtgttatt |
4568320 |
T |
|
Q |
147 |
ttatcattgtttttcatgctgt-tgtatgtccagcctatttattataaaagagccatagataattagaatatgatgttttttgttgttgaaagaattgga |
245 |
Q |
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|||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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T |
4568321 |
ttatcattgtttttcatgctgtatgtatgaccaacctatttattataaaagagccatagataattagaatatgatg-tttttgttgttgaaagaattaga |
4568419 |
T |
|
Q |
246 |
atataatgttgtct |
259 |
Q |
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|||||||||||||| |
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T |
4568420 |
atataatgttgtct |
4568433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 49041080 - 49041275
Alignment:
Q |
29 |
aaaattacacatgtaaataacaaagatggatgtacaacttaattgtatatggttgcaatgaataatagttacgtttgtaatatttatttcagcataggaa |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| || |||||||| ||||||||||||||||||||| |
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T |
49041080 |
aaaattacacatgtaaataacaaagatggatgtacaacttaattgtatatgattgcaatgaaaaattgtcacgtttgtgatatttatttcagcataggaa |
49041179 |
T |
|
Q |
129 |
tagaatcaaagtgttattttatcattgtttttcatgctg-ttgtatgtccagcctatttattataaaagagccatagataattagaatatgatgtt |
223 |
Q |
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|||||||||||| |||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||||| |
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T |
49041180 |
tagaatcaaagttttattttatctttgtttttcatgctgtttgtatgaccagcctatttattataaaagagccgtagataattagcatacgatgtt |
49041275 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 293 - 396
Target Start/End: Original strand, 4569004 - 4569107
Alignment:
Q |
293 |
actattttgaatattttcacacgtgattcattcatactatgcattaagtaattagcacacaccggccacacaattcattggtaaattaacatcagaaatg |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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T |
4569004 |
actattttgaatattttcacacgtgattcattcatactatgcattaagtaattagcacacaccggccacacaattcgttggtaaattaacatcagaaatg |
4569103 |
T |
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Q |
393 |
agaa |
396 |
Q |
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|
|||| |
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|
T |
4569104 |
agaa |
4569107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 59 - 192
Target Start/End: Original strand, 4566822 - 4566956
Alignment:
Q |
59 |
tgtacaacttaattgtatatggttgcaatgaataatagttacgtttgtaatatttatttcagcataggaatagaatcaaagtgttattttatcattgttt |
158 |
Q |
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||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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T |
4566822 |
tgtacgacttaattgtatgaggttgcaatgaaaaatagttacgtttgtaatatttatttcagcataggaatagaatctaagtgtcattttatcattgttt |
4566921 |
T |
|
Q |
159 |
ttcatgctg-ttgtatgtccagcctatttattata |
192 |
Q |
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||||||||| ||||||| |||||| |||||||||| |
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T |
4566922 |
ttcatgctgattgtatgaccagccaatttattata |
4566956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 294 - 394
Target Start/End: Original strand, 14704165 - 14704265
Alignment:
Q |
294 |
ctattttgaatattttcacacgtgattcattcatactatgcattaagtaattagcacacaccggccacacaattcattggtaaattaacatcagaaatga |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| ||||||||||||| |
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T |
14704165 |
ctattttgaatattttcacacgtgattcattcatactatgcattaagtaattagcacacaccggccacaaaattcgttggtgaatttacatcagaaatga |
14704264 |
T |
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Q |
394 |
g |
394 |
Q |
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|
| |
|
|
T |
14704265 |
g |
14704265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 306 - 400
Target Start/End: Original strand, 49042391 - 49042479
Alignment:
Q |
306 |
ttttcacacgtgattcattcatactatgcattaagtaattagcacacaccggccacacaattcattggtaaattaacatcagaaatgagaataat |
400 |
Q |
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||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
49042391 |
ttttcacacgtgattcattcata---tgcattaagc---taacacacaccggccacacaattcattggtaaattaacatcagaaatgagaataat |
49042479 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 49058280 - 49058328
Alignment:
Q |
348 |
cacacaccggccacacaattcattggtaaattaacatcagaaatgagaa |
396 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |||||| |
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T |
49058280 |
cacacaccggccacacacttcattggtaaattaacatcagaattgagaa |
49058328 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 4568162 - 4568204
Alignment:
Q |
17 |
tattatacatcaaaaattacacatgtaaataacaaagatggat |
59 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||| |
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T |
4568162 |
tattatacatcgaaaattacacatgtaaataataaagatggat |
4568204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 302 - 396
Target Start/End: Complemental strand, 9764122 - 9764028
Alignment:
Q |
302 |
aatattttcacacgtgattcattcata-ctatgcattaagtaattagcacacaccggccacacaattcattggtaaattaacatcagaaatgagaa |
396 |
Q |
|
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||||||||||||||||||||||||||| | || || | |||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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T |
9764122 |
aatattttcacacgtgattcattcatatccata-atgcactaattaacacacaccggccacacacttcattggtaaattaacattagaaatgagaa |
9764028 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 396
Target Start/End: Complemental strand, 9778580 - 9778481
Alignment:
Q |
297 |
ttttgaatattttcacacgtgattcattcata-ctatgcattaagtaattagcacacaccggccacacaattcattggtaaattaacatcagaaatgaga |
395 |
Q |
|
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|||| ||||||||||||||||||||||||||| | || || | || ||| ||||||||||||||||| ||||||||||||||||||| |||||||||| |
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|
T |
9778580 |
ttttcaatattttcacacgtgattcattcatatccata-atgcattagttaacacacaccggccacacacttcattggtaaattaacattagaaatgaga |
9778482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 396
Target Start/End: Complemental strand, 9770216 - 9770168
Alignment:
Q |
348 |
cacacaccggccacacaattcattggtaaattaacatcagaaatgagaa |
396 |
Q |
|
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||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
T |
9770216 |
cacacaccggccacacacttcattggtaaattaacattagaaatgagaa |
9770168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 343 - 396
Target Start/End: Complemental strand, 9784239 - 9784186
Alignment:
Q |
343 |
attagcacacaccggccacacaattcattggtaaattaacatcagaaatgagaa |
396 |
Q |
|
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|||| ||||||||||||||||| |||| |||||||||||||| ||||||||||| |
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T |
9784239 |
attaacacacaccggccacacacttcaatggtaaattaacattagaaatgagaa |
9784186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 22642651 - 22642699
Alignment:
Q |
348 |
cacacaccggccacacaattcattggtaaattaacatcagaaatgagaa |
396 |
Q |
|
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||||||||||||||||| || ||||||||||||||||||||| |||||| |
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T |
22642651 |
cacacaccggccacacactttattggtaaattaacatcagaattgagaa |
22642699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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