View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4350_low_4 (Length: 348)
Name: NF4350_low_4
Description: NF4350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4350_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 62 - 259
Target Start/End: Complemental strand, 10408574 - 10408378
Alignment:
| Q |
62 |
ctaattaaagccattactcttccttctatacggcagatgtgtttgataaaaaatcatatatgttctctctcaaattttaagattttggcttatgtatgtt |
161 |
Q |
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| T |
10408574 |
ctaattaaagccattactcttccttctatacggcagatgtgtttgataaaaaatcatatatgttctctctcaaattttaagattttggcttatgtatgtt |
10408475 |
T |
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| Q |
162 |
gcatccaatatgtagacgtgtcggtctcttgagttggtaaattttcgtgtaagtctagcatccatccaatatagatcaaaactagatggtaaattttt |
259 |
Q |
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| T |
10408474 |
gcatccaatatgtagacgtgtcggtctcttgagttggtaaattttcgtgtaagtctcacat-catccaatatagatcaaaactagatggtaaattttt |
10408378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 10408196 - 10408123
Alignment:
| Q |
254 |
atttttgagttggtcgatttctacgttgcaagatgcattcgtacatcaaggacattaagtttgcatgcgactct |
327 |
Q |
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| T |
10408196 |
atttttgagttggtcgatttctacgttgcaagatgcattcgtacatcaaagacattaagtttgcatgcgactct |
10408123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 10408644 - 10408601
Alignment:
| Q |
1 |
atagttttccaacctgactttaaatgtgtacgggtcatctaatt |
44 |
Q |
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| T |
10408644 |
atagttttccaacctgactttaaatgtgtacgggtcatctaatt |
10408601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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