View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4356-Insertion-1 (Length: 1074)
Name: NF4356-Insertion-1
Description: NF4356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4356-Insertion-1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 833; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 833; E-Value: 0
Query Start/End: Original strand, 8 - 988
Target Start/End: Complemental strand, 52176271 - 52175282
Alignment:
| Q |
8 |
cgttgttcaccgaaaattgctgcatcaatattgcatttgacgcaatcttcctctggtggctgccaatgtatttccgcatctgtcatagcctgttgctgct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52176271 |
cgttgttcaccgaaaattgctgcatcaatattgcatttgacgcaatcttcctctggtggctgccaatgtatttccgcatctgtcatagcctgttgctgct |
52176172 |
T |
|
| Q |
108 |
gaaccgttttctcccgaacagtctgccactgtttcagaacctcgcgcgctaaatgcacagccagccgcacatctttcatgtctccctcccacaccttatc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52176171 |
gaaccgttttctcccgaacagtctgccattgtttcagaacctcgcgcgctaaatgcacagccagccgcacatctttcatgtctccctcccacaccttatc |
52176072 |
T |
|
| Q |
208 |
gttttgtcgacgccgcaagcaccataacattattacaatgtcctgacacatttgtttagaacacctgcataataactaaaaaatgcattcagcaaagtta |
307 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52176071 |
gttttgtcgacgccacaagcaccataacattattacaatgtcctggcacatttgtttagaacacctgcataataactaaaaaatgcattcagcaaagtta |
52175972 |
T |
|
| Q |
308 |
gatacagcagcagcagcatccattattatatcccatagcccagctacttgccaaacttgtattgcagcctcgcaaccaataaacacgtgccaatcatttt |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52175971 |
gatacagcagcagcagcatccattattatatcccatagcccagctgcttgccaaacttgtattgcagcctcgcaaccaataaacacgtgccaatcatttt |
52175872 |
T |
|
| Q |
408 |
cataattagtctcgcaattgggacagctgtccgcacacgacactcccctatcttgcagccacatacttttttacataattaattagggactttgaagggg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52175871 |
cataattagtctcgcaattgggacagctgtccgcacacgacactcccctatcttgcagccacatacttttttacataattaattagggactttgaagggg |
52175772 |
T |
|
| Q |
508 |
agggggagtggcacaagcacaagagatggttatttgttgaatagggaataatttttcttgattatagcaaacttgtgaagctttgatgccattattactt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52175771 |
agggggagtggcacaagcacaagagatggttatttgttgaatagagaataatttttcttgattatagcaaacttgtgaagctttgatgccattattactt |
52175672 |
T |
|
| Q |
608 |
gtttcggggcacagtctcatttctagtattttaagtttctattttctcctatgattggcaaaaccataatcagttctggttatgattatgatttcagcag |
707 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52175671 |
gtttcggggcgcagtctcatttctagtattttaagtttctattttctcctatgattggcaaaaccataatcagttctggttatgattatgatttcagcag |
52175572 |
T |
|
| Q |
708 |
tttgaaataatgtacctattaaaaatattaagttagttagagtactaacaaaactatgactactaacagtactag--tttgaaaaggtatgat-tactaa |
804 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| | | | ||| |
|
|
| T |
52175571 |
tttgaaataatgtacttattaaaaatattaagttagttagagtactaataaaactatgattactaacagtactagtatttgttttcttctcttatac-ct |
52175473 |
T |
|
| Q |
805 |
cattacctctacgatagcaacttgacattcttaaaactgtggaattatgtcctaaacatgtatatctcataatcaatgataatgaaatgtgaaaaggaat |
904 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52175472 |
cattacctctacgatagcaacttgacattcttaaaactgtggaattatgtcctaaacatgtatatctcataatcaatgataatgaaatgtgaaaaggaat |
52175373 |
T |
|
| Q |
905 |
taatcaag-aacctacagtagagactgagtattagttgcatt-aaatg-tagtcag-atgatttactttc-attgat--cttctgtgtgaa |
988 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |||||| |||||||||||| |
|
|
| T |
52175372 |
taatcaagaaacctacagtagagactgagtattagttgcattaaaatgttagtcagaatgatttactttcaattgattccttctgtgtgaa |
52175282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 473
Target Start/End: Complemental strand, 25500681 - 25500231
Alignment:
| Q |
8 |
cgttgttcaccgaaaattgctgcatcaatattgcatttgacgcaatcttcctctggtggctgccaatgtatttccgcatctgtcatagcctgttgctgct |
107 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||||||||||| | || ||| ||||||||| | |||||| |||| |
|
|
| T |
25500681 |
cgttgttcaccgaaaattgtagcatcaatattgcatttgacataatcttcctctg-----------tataattctgcatctgtcgcaacctgtttttgct |
25500593 |
T |
|
| Q |
108 |
gaaccgttttctcccgaacagtctgccactgtttcagaacctcgcgcgctaaatgcacagccagccgcacatctttcatgtctccctcccacaccttatc |
207 |
Q |
| |
|
|||| |||||||| ||||| ||||||||| || |||||||| |||||||||| |||||||| | ||||||||||||| |||||||||||||||||||| |
|
|
| T |
25500592 |
gaactgttttctcttgaacaacctgccactgcttaagaacctctcgcgctaaatacacagccatctgcacatctttcatttctccctcccacaccttatc |
25500493 |
T |
|
| Q |
208 |
gttttgtcgacgccgcaagcaccataacattattacaatgtcctgacacatttgtttagaacacctgcataataactaaaaaatgcattcagcaaagtta |
307 |
Q |
| |
|
|||| ||||||||| |||||||||||| || ||| ||||||| || ||| | ||||||||||||||||||||||||| |||||| ||||||||||| ||| |
|
|
| T |
25500492 |
gtttcgtcgacgccacaagcaccataatatcattgcaatgtcgtggcacttctgtttagaacacctgcataataactgaaaaatacattcagcaaaatta |
25500393 |
T |
|
| Q |
308 |
gatacagcagcagcagcatccattattatatcccatagcccagctacttgccaaacttgtattgcagcctcgcaaccaataaacacgtgccaatcatttt |
407 |
Q |
| |
|
|| | ||||| |||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
25500392 |
ga---aacagcaacagcttccattattatatcccatagcccagctacttgccacacttgttttgcagcctcacagccaataaacacgtgccaatcatttt |
25500296 |
T |
|
| Q |
408 |
cataattagtctcgcaattgggacagctgtccgcacacgacactcccctatcttgcagccacatac |
473 |
Q |
| |
|
||||||||||||||||| || | ||||| |||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
25500295 |
cataattagtctcgcaa-tgaggcagctatccgtacacgacactcccctatcttgcagccgcatac |
25500231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 425
Target Start/End: Original strand, 6508555 - 6508829
Alignment:
| Q |
150 |
cgcgcgctaaatgcacagccagccgcacatctttcatgtctccctcccacaccttatcgttttgtcgacgccgcaagcaccataacattattacaatgtc |
249 |
Q |
| |
|
|||| |||||||||||| |||||||||| |||||||| || || ||| |||| |||| || || ||||| || ||||||||||| || | || || |
|
|
| T |
6508555 |
cgcgagctaaatgcacaaccagccgcacttctttcatatcaccttcctacactttattattccttctacgccataaacaccataacatcatcgcgatatc |
6508654 |
T |
|
| Q |
250 |
ctgacacatttgtttagaacacctgcataataactaaaaaatgcattcagcaaagttagatacagcagcagcagcatccattattatatcccatagccca |
349 |
Q |
| |
|
||||| |||| | |||| |||||| |||||| |||||||||||| ||||||||||| |||||||||||||| || || || |||| || ||| |
|
|
| T |
6508655 |
ttgacatgtttgatcggaac-cctgcacaataaccgaaaaatgcattctgcaaagttagaaacagcagcagcagcgtctcatactaattcccgcaggcca |
6508753 |
T |
|
| Q |
350 |
gctacttgccaaacttgtattgcagcctcgcaaccaataaacacgtgccaatcattttcataattagtctcgcaat |
425 |
Q |
| |
|
|| |||||||| ||| || | |||||||||||||| |||| | ||| ||||||||||| || || ||||||||| |
|
|
| T |
6508754 |
gcaacttgccacactagtttggcagcctcgcaacctataacccagtgtcaatcattttcgcaactattctcgcaat |
6508829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 338 - 414
Target Start/End: Original strand, 38196312 - 38196388
Alignment:
| Q |
338 |
tcccatagcccagctacttgccaaacttgtattgcagcctcgcaaccaataaacacgtgccaatcattttcataatt |
414 |
Q |
| |
|
||||||| |||||| |||||||||||||| |||| || || ||||||||||| ||||||| |||||| || ||||| |
|
|
| T |
38196312 |
tcccataacccagcaacttgccaaacttgctttgccgcttcacaaccaataaagacgtgcctatcattctcgtaatt |
38196388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3945 times since January 2019
Visitors: 8743