View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4356-Insertion-11 (Length: 368)
Name: NF4356-Insertion-11
Description: NF4356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4356-Insertion-11 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 81 - 368
Target Start/End: Complemental strand, 33967196 - 33966908
Alignment:
| Q |
81 |
gtttagagttttaatcttattgcagttctatgactgaattcgaaaccaaaacctacgattacgcgcattttggaaacataactagtatatataaaccaaa |
180 |
Q |
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| T |
33967196 |
gtttagagttttaatcttattgcagttctatgactgaattcgaaaccaaaacctatgattacgcgcattttggaaacataactagtatatataaaccaaa |
33967097 |
T |
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| Q |
181 |
ctaaa-cataccattctccatcattttttcattttcacaatcttctcttaagaatgtcaaacatgcattacattttcagcatgttgttatttcttcttct |
279 |
Q |
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| T |
33967096 |
ccaaaacataccattctccatcattttttcattttcacaatcttctcttaagaatgtcaaacatgcattacattttcagcatgttgttatttcttcttct |
33966997 |
T |
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| Q |
280 |
tcttgtacaaaatctgaccacaatacattgtcatacaaaaggaattcgaccgatacgttccgctcgaaacggtttatcgacctacaata |
368 |
Q |
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| T |
33966996 |
tcttgtacaaaatctgaccacaatacattgtcatacaaaaggaattcgaccgatacgttctgctcgaaacggtttatcaacctacaata |
33966908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 33967302 - 33967212
Alignment:
| Q |
8 |
atatcctcagcgcacaatcacacagactaatctctcgagtcggataggaccataatatatgaccaaatattttgtttagagttttaatctt |
98 |
Q |
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| T |
33967302 |
atatcctcagcgcacaatcacacagactaatctctcgagttagataagaccataatatatgaccaaatattttgtttagagttttaatctt |
33967212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 10413204 - 10413232
Alignment:
| Q |
31 |
agactaatctctcgagtcggataggacca |
59 |
Q |
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| T |
10413204 |
agactaatctctcgagtcggataggacca |
10413232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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