View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4356-Insertion-12 (Length: 363)
Name: NF4356-Insertion-12
Description: NF4356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4356-Insertion-12 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 8 - 363
Target Start/End: Original strand, 23640207 - 23640562
Alignment:
| Q |
8 |
gggaacacgccaccagatccatgtgtacataaagtttatttggactaggagggggagaggaaggtggtggcttggaggaagtttgtagtgagaggtgaga |
107 |
Q |
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| T |
23640207 |
gggaacacgccaccagatccatgtgtacataaagtttatttggactaggagggggagaggaaggtggtggcttggaggaagtttgtagtgagaggtgaga |
23640306 |
T |
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| Q |
108 |
gcaaatacaattatttttaggtgtaaacaactatattctattaataaacttcaattttattagcatatatgaactactatacctcataagctacaagcaa |
207 |
Q |
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| T |
23640307 |
gcaaatataattatttttaggtgtaaacaactatattctattaataaacttcaattttattagcatatatgaactactatacctcataagctacaagcaa |
23640406 |
T |
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| Q |
208 |
agaaccaccgtatatgtcattttttgtgatattttcaaagccctgaggagcctggacaaaggcaatttcatgtcccttctcttcatccatgaagaagcaa |
307 |
Q |
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| T |
23640407 |
agaaccaccgtatatgtcattttttgtgatattttcaaagccctgaggagtctgcacaaaggcaatttcatgtcccttctcttcatccatgaagaagcaa |
23640506 |
T |
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| Q |
308 |
agtgcatctcttattgattgagaattgtttgagtacatgtcacaatctacattcag |
363 |
Q |
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| T |
23640507 |
agtgcatctcttattgattgagaattgtttgagtacatgtcacaatctacattcag |
23640562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 206 - 363
Target Start/End: Original strand, 23627795 - 23627952
Alignment:
| Q |
206 |
aaagaaccaccgtatatgtcattttttgtgatattttcaaagccctgaggagcctggacaaaggcaatttcatgtcccttctcttcatccatgaagaagc |
305 |
Q |
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| T |
23627795 |
aaagaaccaccgtatatgtcattttttgtgatattttcaaagccctgaggagcctgcacaaaggcaatttcatgtcccttctcttcatccatgaagaagc |
23627894 |
T |
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| Q |
306 |
aaagtgcatctcttattgattgagaattgtttgagtacatgtcacaatctacattcag |
363 |
Q |
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| T |
23627895 |
aaagtgcatctcttattgattgagaattgtttgagtacatgtcacaatctacattcag |
23627952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 238 - 360
Target Start/End: Original strand, 23654354 - 23654476
Alignment:
| Q |
238 |
attttcaaagccctgaggagcctggacaaaggcaatttcatgtcccttctcttcatccatgaagaagcaaagtgcatctcttattgattgagaattgttt |
337 |
Q |
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| T |
23654354 |
attttcaaaggcctgtggagactgcacaaaagcaatttcatggcctttctcttcatccatgaaataacagagagaatctcttatagattctgaattgttt |
23654453 |
T |
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| Q |
338 |
gagtacatgtcacaatctacatt |
360 |
Q |
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| T |
23654454 |
gagtacatgtcacaatctacatt |
23654476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 27185265 - 27185218
Alignment:
| Q |
54 |
aggagggggagaggaaggtggtggcttggaggaagtttgtagtgagag |
101 |
Q |
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| T |
27185265 |
aggaagggaagaggaaggtggtggcttggtggaagtttgtagagagag |
27185218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 27834807 - 27834760
Alignment:
| Q |
54 |
aggagggggagaggaaggtggtggcttggaggaagtttgtagtgagag |
101 |
Q |
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| T |
27834807 |
aggaagggaagaggaaggtggtggcttggtggaagtttgtagagagag |
27834760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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