View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4356-Insertion-14 (Length: 221)
Name: NF4356-Insertion-14
Description: NF4356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4356-Insertion-14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 44055089 - 44054875
Alignment:
| Q |
7 |
agccctcaaccgaaccgaagctcaatccgaccatataatcagtgcctttaaaaattacgagaaacactcttcgtttgtcacggtgcagcccttgtcagca |
106 |
Q |
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| T |
44055089 |
agccctcaaccgaaccgaagctcaatccgaccatataatcagtgcctttaaaaattacgagaaacactcttcgtttgtcacggtacagcccttgtcagca |
44054990 |
T |
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| Q |
107 |
gtttccccttactccacaatgcacgaagatatctgcaatttagcagaagacaagcgcgtatctctaataatcgttccatttcataaacaacaaacagtcg |
206 |
Q |
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| T |
44054989 |
gtttccccttactccacaatgcacgaagatatctgcaatttagcagaagacaagcgcgtatctctaataatcgttccatttcataaacaacaaacagtcg |
44054890 |
T |
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| Q |
207 |
atggtgcaatggaag |
221 |
Q |
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| T |
44054889 |
atggtgcaatggaag |
44054875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 220
Target Start/End: Complemental strand, 39236858 - 39236748
Alignment:
| Q |
110 |
tccccttactccacaatgcacgaagatatctgcaatttagcagaagacaagcgcgtatctctaataatcgttccatttcataaacaacaaacagtcgatg |
209 |
Q |
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||||||||||| |||||||| |||||||| |||| |||||| ||||| ||||| || | | |||||| | || |||||||| ||||||||||| |||| |
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| T |
39236858 |
tccccttactctacaatgcatgaagatatatgcactttagccgaagaaaagcgtgtcgcctttataatcatcccttttcataagcaacaaacagttgatg |
39236759 |
T |
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| Q |
210 |
gtgcaatggaa |
220 |
Q |
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| T |
39236758 |
gcggaatggaa |
39236748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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