View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4356-Insertion-2 (Length: 1060)

Name: NF4356-Insertion-2
Description: NF4356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4356-Insertion-2
NF4356-Insertion-2
[»] chr6 (2 HSPs)
chr6 (8-1008)||(30006492-30007502)
chr6 (160-223)||(11380222-11380285)
[»] chr8 (4 HSPs)
chr8 (520-644)||(45204812-45204936)
chr8 (842-915)||(35514547-35514620)
chr8 (842-908)||(14486340-14486403)
chr8 (878-916)||(41317780-41317818)
[»] chr5 (2 HSPs)
chr5 (844-923)||(43537574-43537653)
chr5 (842-916)||(14328263-14328337)
[»] chr3 (2 HSPs)
chr3 (844-916)||(24882215-24882286)
chr3 (844-913)||(2315457-2315526)
[»] chr4 (2 HSPs)
chr4 (840-882)||(14125078-14125120)
chr4 (844-890)||(52906408-52906454)
[»] chr7 (1 HSPs)
chr7 (844-909)||(5015152-5015217)
[»] chr2 (1 HSPs)
chr2 (848-925)||(9098610-9098687)
[»] chr1 (2 HSPs)
chr1 (844-916)||(1124596-1124666)
chr1 (523-584)||(36408966-36409027)


Alignment Details
Target: chr6 (Bit Score: 897; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 897; E-Value: 0
Query Start/End: Original strand, 8 - 1008
Target Start/End: Complemental strand, 30007502 - 30006492
Alignment:
Q  8 aatatctcagcaaatgtaggtcttaacttcgaatctctgcaatgcaagagagtagaatttaatcaccaaaaaatgtaattattccatatggtaataacaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30007502 aatatctcagcaaatgtaggtcttaacttcgaatctctgcaatgcaagagagtagaatttaatcaccaaaaaatgtaattattccatatggtaataacaa 30007403  T
Q  108 aaatatacaactaaaattgaaccatgaaccggcactgtctacagtgattcacaaaccaaactggacagttcaaccaattgaaccatgaaccaaaactgtc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30007402 aaatatacaactaaaattgaaccatgaaccggcactgtctacagtgattcacaaaccaaactggacagttcaaccaattgaaccatgaaccagaactgtc 30007303  T
Q  208 tacagttcagttatttgaggtggtcgaacatgatttcgtccctttttgagaagtt----------gaactatgacttggaggtcttgccaattcgatgtc 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||    
T  30007302 tacagttcagttatttgaggtggtcgaacatgatttcgtccctttttgagaagtttaaagcagttgaactatgacttggaggtcttgccaattcgatgtc 30007203  T
Q  298 cagttcgctttttaaatcactaatattaagaatgttttcgttcatcgtaatctcaatgaagacattatatgcagaattcagactcccccctcctttttat 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30007202 cagttcgctttttaaatcactaatattaagaatgttttcgttcatcgtaatctcaatgaagacattatatgcagaattcagactcccccctcctttttat 30007103  T
Q  398 tactattaaccaatgtgattcataaatgtcggttaaacaggataagatgaaaaatgaagtatactaacgtttgccagcattttctgacaatatctgcaat 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30007102 tactattaaccaatgtgattcataaatgtcggttaaacaggataagatgaaaaatgaagtatactaacgtttgccagcattttctgacaatatctgcaat 30007003  T
Q  498 ggaagggtcgatgttttcggggatgtcaagacggcgatgttggaaacccacggcaccaacaacttgcattgaattcattcctctccaaggttgctgcaaa 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30007002 ggaagggtcgatgttttcggggatgtcaagacggcgatgttggaaacccacggcaccaacaacttgcattgaattcattcctctccaaggttgctgcaaa 30006903  T
Q  598 gtagatagctcccataatatgatcccaaagctataaacatcacacctggataatagatcatcacttgttaggatcacaaaaccaaggaaatatgcaacaa 697  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30006902 gtagatagctcccataatatgatcccaaagctataaacatcacacctggataatagatcatcacttgttaggatcacaaaaccaagaaaatatgcaacaa 30006803  T
Q  698 gacattttaaggcaatgttttgaatataagagacatggaaagacgggaatggttcctgccgcacctccttattctcaagaaaaataacagcaacaaagac 797  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30006802 gacattttaaggcaatgttttgaatataagagacatggaaagacgggaatggttcctgccgcacctccttattctcaagaaaaataacaacaacaaagac 30006703  T
Q  798 caggagttaaacagattaggggcattactttccatcttgggttcttattttcacttcaactaataaacataggaaaatatagatcaaatatttctatcac 897  Q
    || ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30006702 caagagttaaacagatta-gggcattactttccaacttgtgttcttattttcacttcaactaataaacataggaaaatatagatcaaatatttctatcac 30006604  T
Q  898 cattttcttttacaattttggaaaatagggtctagcattttcataa---ttttacttgtcaaaacactgtttctgaaatggcattctttgtagcctggtc 994  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||   ||| |||||||||||||||||||||||||  ||||||||||||| || |||    
T  30006603 cattttcttttacaatttttgaaaata-ggtctagcattttcataaatttttaacttgtcaaaacactgtttctgaaaatgcattctttgtag-cttgtc 30006506  T
Q  995 tttcatcttctctc 1008  Q
    ||||||||||||||    
T  30006505 tttcatcttctctc 30006492  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 11380222 - 11380285
Alignment:
Q  160 aaaccaaactggacagttcaaccaattgaaccatgaaccaaaactgtctacagttcagttattt 223  Q
    ||||||| |||||| | |||||||||||||| ||||||| | |||||||| |||||||||||||    
T  11380222 aaaccaatctggacggatcaaccaattgaacaatgaaccgacactgtctatagttcagttattt 11380285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 2e-30; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 520 - 644
Target Start/End: Complemental strand, 45204936 - 45204812
Alignment:
Q  520 atgtcaagacggcgatgttggaaacccacggcaccaacaacttgcattgaattcattcctctccaaggttgctgcaaagtagatagctcccataatatga 619  Q
    ||||| ||||||||||| |||||||| || ||||||||||||||||||| ||||||||||| ||| |||||| ||| |||| | ||||||||||||||||    
T  45204936 atgtccagacggcgatgctggaaaccaacagcaccaacaacttgcattggattcattcctccccagggttgccgcatagtaaagagctcccataatatga 45204837  T
Q  620 tcccaaagctataaacatcacacct 644  Q
     |||| ||||| |||||||||||||    
T  45204836 ccccatagctaaaaacatcacacct 45204812  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 842 - 915
Target Start/End: Complemental strand, 35514620 - 35514547
Alignment:
Q  842 ttattttcacttcaactaataaacataggaaaatatagatcaaatatttctatcaccattttcttttacaattt 915  Q
    |||||| |||||||||||||||||||| || ||||||| || || |||| |  |||||||||||||||||||||    
T  35514620 ttatttccacttcaactaataaacataagagaatataggtccaacatttttcacaccattttcttttacaattt 35514547  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 842 - 908
Target Start/End: Original strand, 14486340 - 14486403
Alignment:
Q  842 ttattttcacttcaactaataaacataggaaaatatagatcaaatatttctatcaccattttctttt 908  Q
    ||||||||||||||||| ||   |||| ||||||||||||||||||||| | |||||||||| ||||    
T  14486340 ttattttcacttcaactgat---cataagaaaatatagatcaaatatttttctcaccattttgtttt 14486403  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 878 - 916
Target Start/End: Original strand, 41317780 - 41317818
Alignment:
Q  878 agatcaaatatttctatcaccattttcttttacaatttt 916  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  41317780 agatccaatatttctctcaccattttcttttacaatttt 41317818  T

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Target: chr5 (Bit Score: 48; Significance: 7e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 844 - 923
Target Start/End: Original strand, 43537574 - 43537653
Alignment:
Q  844 attttcacttcaactaataaacataggaaaatatagatcaaatatttctatcaccattttcttttacaattttggaaaat 923  Q
    |||||||||||||||||||||||||||| |||||||||  ||||||| | |||||||||||||||| | |||| ||||||    
T  43537574 attttcacttcaactaataaacataggagaatatagatttaatatttttctcaccattttcttttaaattttttgaaaat 43537653  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 842 - 916
Target Start/End: Complemental strand, 14328337 - 14328263
Alignment:
Q  842 ttattttcacttcaactaataaacataggaaaatatagatcaaatatttctatcaccattttcttttacaatttt 916  Q
    ||||||||| |||||||||||||||||  | | |||||||||||||||| | |||||||||||||||||||||||    
T  14328337 ttattttcaattcaactaataaacataaaatagtatagatcaaatatttatctcaccattttcttttacaatttt 14328263  T

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Target: chr3 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 844 - 916
Target Start/End: Complemental strand, 24882286 - 24882215
Alignment:
Q  844 attttcacttcaactaataaacataggaaaatatagatcaaatatttctatcaccattttcttttacaatttt 916  Q
    |||||||||||||||||||||||||  | |||||||||| ||||||||| |||||||| ||||||||||||||    
T  24882286 attttcacttcaactaataaacataaaataatatagatctaatatttct-tcaccattatcttttacaatttt 24882215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 844 - 913
Target Start/End: Complemental strand, 2315526 - 2315457
Alignment:
Q  844 attttcacttcaactaataaacataggaaaatatagatcaaatatttctatcaccattttcttttacaat 913  Q
    |||||||||||| |||||||||||| || |||||||||| ||||||||   |||| ||||||||||||||    
T  2315526 attttcacttcatctaataaacataagagaatatagatccaatatttcccccaccgttttcttttacaat 2315457  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 840 - 882
Target Start/End: Complemental strand, 14125120 - 14125078
Alignment:
Q  840 tcttattttcacttcaactaataaacataggaaaatatagatc 882  Q
    ||||||||||||||||||||||||| |||||| ||||||||||    
T  14125120 tcttattttcacttcaactaataaatataggagaatatagatc 14125078  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 844 - 890
Target Start/End: Complemental strand, 52906454 - 52906408
Alignment:
Q  844 attttcacttcaactaataaacataggaaaatatagatcaaatattt 890  Q
    |||||||||||||||||||| |||| || |||||||||||| |||||    
T  52906454 attttcacttcaactaataatcataagagaatatagatcaagtattt 52906408  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 844 - 909
Target Start/End: Original strand, 5015152 - 5015217
Alignment:
Q  844 attttcacttcaactaataaacataggaaaatatagatcaaatatttctatcaccattttctttta 909  Q
    ||||||||||||||||||||| ||| || ||| |||||| ||||||||  ||||| ||||||||||    
T  5015152 attttcacttcaactaataaaaataagagaatgtagatccaatatttccctcacctttttctttta 5015217  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 848 - 925
Target Start/End: Complemental strand, 9098687 - 9098610
Alignment:
Q  848 tcacttcaactaataaacataggaaaatatagatcaaatatttctatcaccattttcttttacaattttggaaaatag 925  Q
    |||||||||||||| || ||| || |||||||||| || |||| |  |||||||||||||||| || || ||||||||    
T  9098687 tcacttcaactaatcaatataagagaatatagatccaacatttttcacaccattttcttttacgatatttgaaaatag 9098610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 844 - 916
Target Start/End: Original strand, 1124596 - 1124666
Alignment:
Q  844 attttcacttcaactaataaacataggaaaatatagatcaaatatttctatcaccattttcttttacaatttt 916  Q
    |||||||||| || ||||| ||| | ||  ||||||||||||||||||  || ||||||||||||||||||||    
T  1124596 attttcactttaattaatatacacaagaggatatagatcaaatatttc--tctccattttcttttacaatttt 1124666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 523 - 584
Target Start/End: Complemental strand, 36409027 - 36408966
Alignment:
Q  523 tcaagacggcgatgttggaaacccacggcaccaacaacttgcattgaattcattcctctcca 584  Q
    ||||| || |||| ||||||||| ||||| |||||||||||||| | ||||||||| |||||    
T  36409027 tcaaggcgacgattttggaaacctacggccccaacaacttgcataggattcattccactcca 36408966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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