View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4356-Insertion-5 (Length: 857)
Name: NF4356-Insertion-5
Description: NF4356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4356-Insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 608; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 6 - 778
Target Start/End: Complemental strand, 40567759 - 40566995
Alignment:
| Q |
6 |
cattttggtctcttgcgcgtcaagtttcattgcataattgagttttaataagttgttcaattttggttatttatattggtcccatcccatgtatgtattg |
105 |
Q |
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| T |
40567759 |
cattttggtctcttgcgcgtcaagtttcattgcatagttgagttttaataagttgttcaattttggttatttatattggtcccat-----gtatgtattg |
40567665 |
T |
|
| Q |
106 |
taagtagttgatattttcacttcaccggataacgcaagccaagtaggagataagtggcacctaaaagaaaagagaatattcgaatcctatatgataatga |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40567664 |
taagtagttgatattttcacttcaccggataacgcaagccaagtaggagataagtgacacctaaaagaaaagagaatattcgaatcccatatgataatga |
40567565 |
T |
|
| Q |
206 |
taataatattgacatgcatgagtttgacgtaactcccctactcatttttgtctctaataggcgcaagttatttgttttgnnnnnnnggggtaaaataata |
305 |
Q |
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| T |
40567564 |
taataatattgacatgcatgagtttgacgtaactcccctactcatttttgtctctaataggcgcaagttatttgttttgtttttttggggtaaaataata |
40567465 |
T |
|
| Q |
306 |
ggcggaagttaaagaatccaaagggctagtgatgcaatgcaaatcatggcttgtggtgccaccttcattcgcactccacctctctctaactctattttta |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40567464 |
ggcggaagttaaagaatccaaagggctagtgatgcaatgcaaatcatggcttgtggtgccaccttcattcgcactccacctctctctaactctattttta |
40567365 |
T |
|
| Q |
406 |
aggctatactatattacacgcatccttgggtaaactttttaatctgaaggatattgtgcaggtattgtttttaaataattttatcattaaaactcaatta |
505 |
Q |
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| T |
40567364 |
aggctatactatattacacgcatccttgggtaaagtttttaatctgaaggatattgtgcaggtattgtttttaaataattttatcattaaaactcaatta |
40567265 |
T |
|
| Q |
506 |
aacgnnnnnnnnngttttgttgtgttaatcgtctgattat--gaggaaagagattctgaaaattatttaactaaatcaaagaacatgttctctttatcat |
603 |
Q |
| |
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|| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40567264 |
aatttttttttttttttttttgtgttaatcgtctgattatacgaggaaagagattctgaaaattatttaactaaatcaaagaacatgttctctttatcat |
40567165 |
T |
|
| Q |
604 |
atttagaaagaacaatgttccttttcttatc-ttttctacaagctaagtgaaccctatttatnnnnnnntacaacgatatgtgtcaataatatgatccaa |
702 |
Q |
| |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40567164 |
atttagaaagaacaatgttccttttctcatctttttctacaagctaagtgaacccta------aagaaatacaacgatatgtgtcaataatatgatccaa |
40567071 |
T |
|
| Q |
703 |
tgatatggccccattcaaggttcatagcatataattttttctcatgggagacaattagagatgagaatcatacctt |
778 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40567070 |
tgatatggccccattcaaggttcatagcatagaattttttctcatgggagacaattagagatgagaatcatacctt |
40566995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 816 - 857
Target Start/End: Complemental strand, 40567001 - 40566960
Alignment:
| Q |
816 |
atacctttgatgatcatttactcctttagttgattagcttag |
857 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
40567001 |
atacctttgatgatcatttactcctttagttgattagcttag |
40566960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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