View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4356-Insertion-6 (Length: 655)

Name: NF4356-Insertion-6
Description: NF4356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4356-Insertion-6
NF4356-Insertion-6
[»] chr7 (8 HSPs)
chr7 (125-655)||(5459499-5460022)
chr7 (8-96)||(5460116-5460206)
chr7 (172-414)||(4123234-4123474)
chr7 (170-261)||(4514592-4514684)
chr7 (173-222)||(12223081-12223130)
chr7 (171-222)||(19416751-19416802)
chr7 (170-222)||(16812452-16812505)
chr7 (170-222)||(9065021-9065073)
[»] chr8 (9 HSPs)
chr8 (125-513)||(12842621-12843005)
chr8 (143-496)||(33928968-33929315)
chr8 (403-600)||(20706534-20706731)
chr8 (121-252)||(20704119-20704251)
chr8 (138-221)||(27137694-27137778)
chr8 (47-95)||(12842532-12842579)
chr8 (47-81)||(33929383-33929417)
chr8 (338-436)||(35104331-35104429)
chr8 (178-222)||(15598282-15598326)
[»] chr4 (14 HSPs)
chr4 (293-537)||(17743270-17743514)
chr4 (194-430)||(9883667-9883905)
chr4 (345-564)||(6115856-6116076)
chr4 (351-600)||(16301078-16301327)
chr4 (444-600)||(20748088-20748245)
chr4 (178-261)||(6115705-6115787)
chr4 (351-564)||(16404512-16404727)
chr4 (158-233)||(13929565-13929641)
chr4 (339-413)||(23692337-23692412)
chr4 (329-439)||(17476718-17476828)
chr4 (161-207)||(17743138-17743184)
chr4 (151-208)||(17133373-17133429)
chr4 (134-193)||(16175735-16175792)
chr4 (181-261)||(21546293-21546373)
[»] chr5 (4 HSPs)
chr5 (159-613)||(25954691-25955140)
chr5 (138-252)||(19761120-19761235)
chr5 (178-261)||(11849076-11849159)
chr5 (353-439)||(16687724-16687810)
[»] chr1 (9 HSPs)
chr1 (351-613)||(34487921-34488183)
chr1 (121-261)||(34487702-34487842)
chr1 (138-274)||(11832976-11833113)
chr1 (143-261)||(15570884-15571002)
chr1 (313-390)||(20817671-20817748)
chr1 (498-597)||(12901058-12901157)
chr1 (144-261)||(26858738-26858856)
chr1 (178-222)||(18515490-18515534)
chr1 (178-222)||(23917326-23917370)
[»] chr2 (13 HSPs)
chr2 (125-600)||(18114228-18114705)
chr2 (339-510)||(16195486-16195657)
chr2 (160-366)||(30461965-30462171)
chr2 (178-261)||(27918937-27919019)
chr2 (309-511)||(35512381-35512583)
chr2 (502-598)||(30462584-30462680)
chr2 (170-222)||(33240196-33240248)
chr2 (170-222)||(33248117-33248169)
chr2 (143-261)||(22111286-22111403)
chr2 (177-234)||(42298062-42298120)
chr2 (170-207)||(16735573-16735610)
chr2 (178-251)||(29966914-29966987)
chr2 (173-221)||(40202956-40203004)
[»] scaffold0008 (2 HSPs)
scaffold0008 (178-293)||(3771-3886)
scaffold0008 (151-223)||(9837-9910)
[»] chr3 (8 HSPs)
chr3 (351-414)||(19121684-19121747)
chr3 (175-234)||(27685546-27685606)
chr3 (164-222)||(19225276-19225334)
chr3 (178-247)||(2120947-2121016)
chr3 (170-222)||(12412243-12412295)
chr3 (173-233)||(17769625-17769685)
chr3 (173-233)||(19070926-19070986)
chr3 (157-223)||(13494858-13494924)
[»] chr6 (5 HSPs)
chr6 (178-324)||(18773387-18773533)
chr6 (161-207)||(12870654-12870700)
chr6 (173-222)||(31720228-31720277)
chr6 (213-261)||(14760503-14760551)
chr6 (166-242)||(33545793-33545869)
[»] scaffold0042 (1 HSPs)
scaffold0042 (157-243)||(89665-89751)
[»] scaffold0606 (1 HSPs)
scaffold0606 (170-207)||(4994-5031)
[»] scaffold0340 (1 HSPs)
scaffold0340 (170-207)||(17452-17489)


Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 125 - 655
Target Start/End: Complemental strand, 5460022 - 5459499
Alignment:
Q  125 tggttcatcccataatttgaggttaatccagcccccttgcattttcaagagaattttcactataatcaaacaagattacaatttgtcaaacacacaagtt 224  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5460022 tggttcatcccataatttgaggttaatccagtcccctttcattttcaagagaattttcactataatcaaacaagattacaatttgtcaaacacacaagtt 5459923  T
Q  225 tgagacttccatgcctcatacaagaggaattatacaaccaaattttacaacaaataaaattggttgtttacactttgtactcgaagtgtggtaaactaaa 324  Q
    |||||||||||| ||||  ||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||    
T  5459922 tgagacttccatacctctgacaagaggaattatacaaccaatgtttacaacaaataagattggttgtttacactttgtactcggagtctggtaaactaaa 5459823  T
Q  325 cttgaagtttaattaacttctgaccctaagaaattctaagatttgaagtttgtgagaattttctaagtgcttttgcgcttttgaatttgaaagaattttg 424  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||        |||||||||||||||||||||    
T  5459822 cttgaagtttaattaacttctgaccctaagaaattctaagattcgaagtttgtgagaattttctaagtgct--------tttgaatttgaaagaattttg 5459731  T
Q  425 tcactagtaaaatatatatgttcacttaatttcttcagactgctcaggtcctcgtataagagagaaatgagagagttgttgtttgaagagtgttagtgca 524  Q
    ||||| ||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5459730 tcacttgtaaaatatgtgtgttcacttaatttcttcatactgctcaggtcctcgtataagagagaaatgagagagctgttgtttgaagagtgttagtgca 5459631  T
Q  525 tcaaattcatcc-taggaagctttgaatcagttttgaaaacattgcctttaatggataatgatgttgaatagtactacataggtcctttgttaatagtag 623  Q
    |||||||| ||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  5459630 tcaaattcgtccttaggaagctttgaatcagttttgaaaactttgcctctaatggataatgatgttgaatagtactacataggtcctttgttactggtag 5459531  T
Q  624 aatgatccgttaaattctctttgccactgaat 655  Q
    ||||||| |||| |||||||||||||||||||    
T  5459530 aatgatctgttacattctctttgccactgaat 5459499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 5460206 - 5460116
Alignment:
Q  8 agaaaaacacaaaaagggg--aggattgaattgtgttgtcatttttgaaaatctttttaagtttttaaacaaaacagagcaaacagataat 96  Q
    |||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5460206 agaaaaacacaagaaggggggaggattgaattgtgttgtcatttttgaaaatctttttaagtgtttaaacaaaacagagcaaacagataat 5460116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 172 - 414
Target Start/End: Complemental strand, 4123474 - 4123234
Alignment:
Q  172 agagaattttcactataatcaaacaagattacaatttgtcaaacacacaagtttgagacttccatgcctcatacaagaggaattatacaaccaaatttta 271  Q
    ||||| ||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| ||||||| |||||| || ||||| ||  | | |||     
T  4123474 agagatttttcactataatcacacaagattacaatttctcagacacacaagtttgagacttccttgcctcacacaagaagacttataaaattagacttt- 4123376  T
Q  272 caacaaataaaattggttgtttacactttgtactcgaagtgtggtaaactaaacttgaagtttaattaacttctgaccctaagaaattctaagatttgaa 371  Q
     |   |||||| ||   |||||||||||||||||| ||| ||||||||| ||| || ||||| || ||| |  |||| |||||||||| |||||| | ||    
T  4123375 -attgaataaatttacgtgtttacactttgtactcaaagagtggtaaacaaaatttaaagttcaagtaattcatgacactaagaaattttaagatataaa 4123277  T
Q  372 gtttgtgagaattttctaagtgcttttgcgcttttgaatttga 414  Q
    ||||   | || |||||||||| || ||| |||||||||||||    
T  4123276 gtttagaaaaaatttctaagtgtttgtgcacttttgaatttga 4123234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 261
Target Start/End: Complemental strand, 4514684 - 4514592
Alignment:
Q  170 caagagaattttc-actataatcaaacaagattacaatttgtcaaacacacaagtttgagacttccatgcctcatacaagaggaattatacaa 261  Q
    ||||||| ||||| |||||||||| |||||||| |||||| || |||||||||||   || ||||| ||||||| ||||||||| ||||||||    
T  4514684 caagagatttttccactataatcacacaagattgcaatttctccaacacacaagtcaaagtcttccttgcctcacacaagaggacttatacaa 4514592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 12223130 - 12223081
Alignment:
Q  173 gagaattttcactataatcaaacaagattacaatttgtcaaacacacaag 222  Q
    |||| ||||||||||||||| ||||||||||||||  |||||||||||||    
T  12223130 gagatttttcactataatcacacaagattacaattgctcaaacacacaag 12223081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 19416751 - 19416802
Alignment:
Q  171 aagagaattttcactataatcaaacaagattacaatttgtcaaacacacaag 222  Q
    |||||| ||||||||||||||| ||||||||||||||  |||| ||||||||    
T  19416751 aagagatttttcactataatcacacaagattacaattgctcaagcacacaag 19416802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 16812452 - 16812505
Alignment:
Q  170 caagagaattttcactataatcaaacaa-gattacaatttgtcaaacacacaag 222  Q
    ||||||| ||||||||||||||| |||| ||||||||||  |||||||||||||    
T  16812452 caagagatttttcactataatcatacaaggattacaattgctcaaacacacaag 16812505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 9065021 - 9065073
Alignment:
Q  170 caagagaattttcactataatcaaacaagattacaatttgtcaaacacacaag 222  Q
    ||||||| |||||||||||||||  |||||||||||||  |||| ||||||||    
T  9065021 caagagacttttcactataatcactcaagattacaattgctcaagcacacaag 9065073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 4e-49; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 125 - 513
Target Start/End: Original strand, 12842621 - 12843005
Alignment:
Q  125 tggttcatcccataatttgaggttaatccagcccccttgcattttcaagagaattttcactataatcaaacaagattacaatttgtcaaacacacaagtt 224  Q
    |||||| ||||| |||||||||||| ||||| |||||| || || ||| | | |||| |||||||||| ||||||||||||||  |||||||||||||||    
T  12842621 tggttcgtcccaaaatttgaggttagtccagtccccttacacttccaaaatattttttactataatcacacaagattacaattgatcaaacacacaagtt 12842720  T
Q  225 tgagacttccatgcctcatacaagaggaattatacaaccaaattttacaacaaataaaattggttgtttacactttgtactcgaagtgtggtaaactaaa 324  Q
    |||||||||  ||||||| ||||||||||||||||||  | | |||  | ||||| |||| |  ||||| |||||||||||| ||| ||||||||| |||    
T  12842721 tgagacttctttgcctcacacaagaggaattatacaattagagttt--atcaaat-aaatcg--tgtttgcactttgtactcaaagagtggtaaacaaaa 12842815  T
Q  325 cttgaa-gtttaattaacttctgaccctaagaaattctaagatttgaagtttgtgagaattttctaagtgcttttgcgcttttgaatttgaaagaatttt 423  Q
    ||| || | | ||  ||||| |||| |||||||||| || ||| |||||||  |  ||||||||||  || || || |||| ||||||||| ||| ||||    
T  12842816 cttaaagggtaaagaaacttgtgacactaagaaattatatgatatgaagttcatacgaattttctatatgtttgtgtgcttctgaatttgacagagtttt 12842915  T
Q  424 gtcactagtaaaatatatatgttcacttaatttcttcagactgctcaggtcctcgtataagagagaaatgagagagttgttgtttgaaga 513  Q
    |||||| ||||||||| | |  || |||||||| || | ||||||||||||||  |||| |||||||||||||||||  |||||||||||    
T  12842916 gtcacttgtaaaatatgtgtagtctcttaattttttaatactgctcaggtccttatatatgagagaaatgagagagtcattgtttgaaga 12843005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 143 - 496
Target Start/End: Complemental strand, 33929315 - 33928968
Alignment:
Q  143 gaggttaatccagcccccttgcattttcaagagaattttcactataatcaaacaagattacaatttgtcaaacacacaagtttgagacttccatgcctca 242  Q
    ||||||| ||||| || |||||| || |||  || ||||||||||||||| ||||||||| ||||| |||||||| |||| |||||||||   | |||||    
T  33929315 gaggttagtccagtcctcttgcacttccaaatgatttttcactataatcacacaagattataatttatcaaacacgcaag-ttgagactttattacctca 33929217  T
Q  243 tacaagaggaattatacaaccaaattttacaacaaataaaattggt--tgtttacactttgtactcgaagtgtggtaaactaaacttgaagtttaattaa 340  Q
     ||||||||| |||||| | |||| |||  ||||||||||   | |  |||||||||||| ||||   || |||| |||| |||||||| ||| || |||    
T  33929216 cacaagaggacttataccatcaaagttt--aacaaataaatgagattctgtttacactttttactaagagagtggcaaacaaaacttgaggttcaagtaa 33929119  T
Q  341 cttctgaccctaagaaattctaagatttgaagtttgtgagaattttctaagtgcttttgcgcttttgaatttgaaagaattttgtcactagtaaaatata 440  Q
    ||| | || ||||| ||||||||||| | |||||||| |||||    |||||| ||   |||||||||||| || ||| ||||| |||| || ||||||     
T  33929118 cttgttacactaagcaattctaagatgtaaagtttgtaagaat----taagtgattgaacgcttttgaattcgacagagttttgacacttgtgaaatat- 33929024  T
Q  441 tatgttcacttaatttcttcagactgctcaggtcctcgtataagagagaaatgaga 496  Q
    | |  || ||||||||||||| |||||| |||||||  ||||||||||||||||||    
T  33929023 tttcatctcttaatttcttcaaactgcttaggtccttatataagagagaaatgaga 33928968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 403 - 600
Target Start/End: Original strand, 20706534 - 20706731
Alignment:
Q  403 ttttgaatttgaaagaattttgtcactagtaaaatatatatgttcacttaatttcttcagactgctcaggtcctcgtataagagagaaatgagagagttg 502  Q
    |||||||||||| ||| ||||| |||| ||||| ||| |    |||||||| ||||||| |||||| |||||||  |||  ||||||||||||||||| |    
T  20706534 ttttgaatttgacagagttttgacacttgtaaattatgtgaagtcacttaagttcttcaaactgcttaggtccttatattggagagaaatgagagagtcg 20706633  T
Q  503 ttgtttgaagagtgttagtgcatcaaattcatcctag-gaagctttgaatcagttttgaaaacattgcctttaatggataatgatgttgaatagtacta 600  Q
    ||||||||||||||| || ||||||||||| || | | ||||||||| || |  |||| |||| |||||| ||||||||||||  ||||||||||||||    
T  20706634 ttgtttgaagagtgtcagcgcatcaaattcctctttgagaagctttg-atgaaatttgtaaactttgcctctaatggataatgtcgttgaatagtacta 20706731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 121 - 252
Target Start/End: Original strand, 20704119 - 20704251
Alignment:
Q  121 atcctggttcatcccataatttgaggttaatccagcccccttgcattttc-aagagaattttcactataatcaaacaagattacaatttgtcaaacacac 219  Q
    ||||| ||||| |||| |||| ||||||| ||||| ||||||||| |||| || ||| ||| ||||| ||||| |||||||||||| |  ||||||||||    
T  20704119 atccttgttcaccccacaattcgaggttagtccagtccccttgcactttctaatagattttccactacaatcacacaagattacaactgctcaaacacac 20704218  T
Q  220 aagtttgagacttccatgcctcatacaagagga 252  Q
    ||||||||||||||| || |||| |||||||||    
T  20704219 aagtttgagacttccttgtctcagacaagagga 20704251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 27137694 - 27137778
Alignment:
Q  138 aatttgaggttaatccagcccccttgcattttcaagagaattttcactataatcaaacaagattacaatttg-tcaaacacacaa 221  Q
    |||||||||||| | ||| |||||   | |||||||||| ||||||||||| ||| |||||||||||||||| ||||||||||||    
T  27137694 aatttgaggttagttcagtcccctgcaactttcaagagatttttcactatagtcacacaagattacaatttgctcaaacacacaa 27137778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 12842532 - 12842579
Alignment:
Q  47 tttttgaaaatctttttaagtttttaaacaaaacagagcaaacagataa 95  Q
    |||||||||||||||| |||| | |||||||||||||||||||||||||    
T  12842532 tttttgaaaatctttt-aagtgtgtaaacaaaacagagcaaacagataa 12842579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 33929417 - 33929383
Alignment:
Q  47 tttttgaaaatctttttaagtttttaaacaaaaca 81  Q
    ||||||||||||||||||||| |||||||||||||    
T  33929417 tttttgaaaatctttttaagtgtttaaacaaaaca 33929383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 338 - 436
Target Start/End: Complemental strand, 35104429 - 35104331
Alignment:
Q  338 taacttctgaccctaagaaattctaagatttgaagtttgtgagaattttctaagtgcttttgcgcttttgaatttgaaagaattttgtcactagtaaaa 436  Q
    |||||||| || || | ||||||||||||   |||||||| ||||||||||||||| ||  | |||||| ||||||| ||| ||||| |||| ||||||    
T  35104429 taacttctaacactgaaaaattctaagatactaagtttgtaagaattttctaagtgtttgagtgcttttaaatttgacagagttttgacacttgtaaaa 35104331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 15598282 - 15598326
Alignment:
Q  178 ttttcactataatcaaacaagattacaatttgtcaaacacacaag 222  Q
    |||| |||||||||| |||||||||||||| ||||| ||||||||    
T  15598282 tttttactataatcacacaagattacaattggtcaagcacacaag 15598326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 293 - 537
Target Start/End: Original strand, 17743270 - 17743514
Alignment:
Q  293 tacactttgtactcgaagtgtggtaaactaaacttgaagtttaattaacttctgaccctaagaaattctaagatttgaagtttgtgagaattttctaagt 392  Q
    |||||||||||||| ||| |||||||||||||||| | ||| ||  ||||| | || |||||||||| ||| || |||| ||||| ||||||||||||||    
T  17743270 tacactttgtactcaaagagtggtaaactaaacttaaggttcaagaaacttttaacactaagaaattataaaatatgaattttgtaagaattttctaagt 17743369  T
Q  393 gcttttgcgcttttgaatttgaaagaattttgtcactagtaaaatatatatgttcacttaatttcttcagactgctcaggtcctcgtataagagagaaat 492  Q
    | || ||||||||||||||||| ||| ||||| |||| ||||||| | | |  || ||||||||||||| | || |||||||||  ||||||||| ||||    
T  17743370 gtttgtgcgcttttgaatttgatagagttttgacacttgtaaaatttgtgtagtctcttaatttcttcaaattgttcaggtccttatataagagataaat 17743469  T
Q  493 gagagagttgttgtttgaagagtgttagtgcatcaaattcatcct 537  Q
    ||||| || |||||||||||||||| |  ||||||||||| ||||    
T  17743470 gagagtgtcgttgtttgaagagtgtcaacgcatcaaattcttcct 17743514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 194 - 430
Target Start/End: Complemental strand, 9883905 - 9883667
Alignment:
Q  194 acaagattacaatttgtcaaacacacaagtttgagacttccatgcctcatacaagaggaattatacaaccaaattttacaacaaataaaattggt-tgtt 292  Q
    |||||||||||| |  |||||||||||||||| | |||||| || |||| |||||||||||||||||| || | |||||| |||||||  ||  | | ||    
T  9883905 acaagattacaactgctcaaacacacaagtttaaaacttccttgtctcacacaagaggaattatacaatcagagtttacatcaaataagcttaatatttt 9883806  T
Q  293 tacactttgtactcgaagtgtggtaaactaaacttgaagtttaattaacttctgaccctaagaaattctaagatttgaagtttgtgagaattttctaagt 392  Q
    |||| | |||||||  |  |||||||||||||||| ||||||||  ||||||| || ||||||||||||||||| | || ||||| | ||| ||||||||    
T  9883805 tacattgtgtactcatatagtggtaaactaaacttaaagtttaaggaacttctaacactaagaaattctaagatatcaaatttgtaaaaatattctaagt 9883706  T
Q  393 gcttttgcgc-ttttgaatttgaaagaattttgtcacta 430  Q
    | || ||| | |||||||||||| ||| ||||| |||||    
T  9883705 gtttgtgcactttttgaatttgatagagttttgacacta 9883667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 345 - 564
Target Start/End: Original strand, 6115856 - 6116076
Alignment:
Q  345 tgaccctaagaaattctaagatttgaagtttgtgagaattttctaagtgcttttgcgcttttgaatttgaaagaattttgtcactagtaaaatatatat- 443  Q
    |||| ||||||||||||||||| | ||||| || ||||||||||||||| || ||||||||||||||||| ||| ||||| | || ||||||||| |||     
T  6115856 tgacactaagaaattctaagatctaaagttggtaagaattttctaagtgtttgtgcgcttttgaatttgacagagttttgacgcttgtaaaatatgtata 6115955  T
Q  444 gttcacttaatttcttcagactgctcaggtcctcgtataagagagaaatgagagagttgttgtttgaagagtgttagtgcatcaaattcatcctagg-aa 542  Q
    ||| | | || ||||||| ||| |||| ||| |  |||||||||||||||||||||  |||| ||||||||||  || ||||||  ||  |||| || ||    
T  6115956 gttta-taaagttcttcaaactactcaagtcattatataagagagaaatgagagagccgttggttgaagagtgccagcgcatcatttttttccttggaaa 6116054  T
Q  543 gctttgaatcagttttgaaaac 564  Q
    |||||| |||||||||||||||    
T  6116055 gctttggatcagttttgaaaac 6116076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 351 - 600
Target Start/End: Complemental strand, 16301327 - 16301078
Alignment:
Q  351 taagaaattctaagatttgaagtttgtgagaattttctaagtgcttttgcgcttttgaattt-gaaagaattttgtcactagtaaaatatatatgttcac 449  Q
    ||||||||||||||||   |||||||| |||||||||||| || || ||||||||||||||| ||  || ||||  |||| ||||||||||| |  ||      
T  16301327 taagaaattctaagataataagtttgtaagaattttctaa-tgtttgtgcgcttttgaattttgactgacttttaacacttgtaaaatatatgttgtctt 16301229  T
Q  450 ttaatttcttcagactgctcaggtcctcgtataagagagaaatgagagagttgttgtttgaagagtgttagtgcatcaaattcatcctag-gaagctttg 548  Q
    |||| ||||||| ||||||||  ||||  |||| ||||||||||||||||  |||||||||| |||||  | |||| |  ||| |||| | ||||| |||    
T  16301228 ttaaattcttcaaactgctcaaatccttatataggagagaaatgagagaggcgttgtttgaaaagtgtccgcgcatgagtttcgtcctcgagaagc-ttg 16301130  T
Q  549 aatcagttttgaaaacattgcctttaatggataatgatgttgaatagtacta 600  Q
    |||||||||||||||| | || | |||| |||||||  ||||||||||||||    
T  16301129 aatcagttttgaaaacttcgcttctaatagataatgtagttgaatagtacta 16301078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 444 - 600
Target Start/End: Original strand, 20748088 - 20748245
Alignment:
Q  444 gttcacttaatttcttcagactgctcaggtcctcgtataagagagaaatgagagagttgttgtttgaagagtgttagtgcatcaaattcatcctag-gaa 542  Q
    |||| ||||||||||||| |||| |||||| ||  |||| |||||||| |||||||| ||||||||||||| |  |   |||||||||| | || | |||    
T  20748088 gttctcttaatttcttcaaactgttcaggttcttatataggagagaaacgagagagtcgttgtttgaagagggccaacacatcaaattcgttcttgagaa 20748187  T
Q  543 gctttgaatcagttttgaaaacattgcctttaatggataatgatgttgaatagtacta 600  Q
    ||||||||||| |||||||||| ||| || ||||||||||||  ||| ||||||||||    
T  20748188 gctttgaatcaattttgaaaacgttgtctctaatggataatgtcgttaaatagtacta 20748245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 6115705 - 6115787
Alignment:
Q  178 ttttcactataatcaaacaagattacaatttgtcaaacacacaagtttgagacttccatgcctcatacaagaggaattatacaa 261  Q
    |||||| |||||||| ||||||||| || |  |||||||||||| |||||||||| ||||||||| | ||||||| ||||||||    
T  6115705 ttttcagtataatcacacaagattaaaactgctcaaacacacaattttgagactt-catgcctcacaaaagaggacttatacaa 6115787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 351 - 564
Target Start/End: Complemental strand, 16404727 - 16404512
Alignment:
Q  351 taagaaattctaagatttgaagtttgtgagaattttctaagtgcttttgcgcttttgaatttgaaagaattttgtcactagtaaaatatatatgttcac- 449  Q
    ||||||||| ||||||   |||||||  | ||||||||||||| || ||||||||||| || || ||| ||||| |||| |||||||||||    || |     
T  16404727 taagaaattttaagatactaagtttgcaataattttctaagtgtttatgcgcttttgagttggacagagttttgacacttgtaaaatatatgcaatctct 16404628  T
Q  450 ttaatttcttcagactgctcaggtcctcgtataagagagaaatgagagagttgttgtttgaagagtgttagtgcatcaaattcatcctag-gaagctttg 548  Q
    ||| ||||| || ||| ||||||||||  |||| ||||| ||||||||||  ||| ||  ||||||||||   |||||||||| | || | |||| ||||    
T  16404627 ttattttctacaaactactcaggtccttatataggagagtaatgagagagacgttcttcaaagagtgttaacacatcaaattcgttcttgagaagttttg 16404528  T
Q  549 aatcagttttgaaaac 564  Q
    |||||| |||||||||    
T  16404527 aatcagatttgaaaac 16404512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 13929641 - 13929565
Alignment:
Q  158 cccttgcattttcaagagaattttcactataatcaaacaagattacaatttg-tcaaacacacaagtttgagacttc 233  Q
    |||||||| || ||||||| |||||||||||| || | |||||||||| ||| ||||||||||||||  ||||||||    
T  13929641 cccttgcacttccaagagatttttcactataaccacataagattacaacttgctcaaacacacaagtaagagacttc 13929565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 413
Target Start/End: Original strand, 23692337 - 23692412
Alignment:
Q  339 aacttctgaccct-aagaaattctaagatttgaagtttgtgagaattttctaagtgcttttgcgcttttgaatttg 413  Q
    |||||||||| || ||||||| |||||||   |||||||||||||||||||| ||| || || |||||||||||||    
T  23692337 aacttctgacacttaagaaatactaagatactaagtttgtgagaattttctaggtgtttgtgtgcttttgaatttg 23692412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 329 - 439
Target Start/End: Original strand, 17476718 - 17476828
Alignment:
Q  329 aagtttaattaacttctgaccctaagaaattctaagatttgaagtttgtgagaattttctaagtgcttttgcgcttttgaatttgaaagaattttgtcac 428  Q
    ||||| || ||||||||||| |||||||||| |||||| | ||||||||  || |||| | |||| || |||  |||||||||||| ||| ||||| |||    
T  17476718 aagttcaagtaacttctgacactaagaaattttaagatataaagtttgtatgattttttttagtgtttgtgcatttttgaatttgacagagttttgacac 17476817  T
Q  429 tagtaaaatat 439  Q
    |  ||||||||    
T  17476818 ttctaaaatat 17476828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 17743138 - 17743184
Alignment:
Q  161 ttgcattttcaagagaattttcactataatcaaacaagattacaatt 207  Q
    ||||| |||||| ||| ||||||||||||||| ||||||||||||||    
T  17743138 ttgcactttcaacagatttttcactataatcacacaagattacaatt 17743184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 17133373 - 17133429
Alignment:
Q  151 tccagcccccttgcattttcaagagaattttcactataatcaaacaagattacaattt 208  Q
    ||||| ||||||||| ||||||  ||||||||||| |||||| |||||||||||||||    
T  17133373 tccagtccccttgcactttcaat-gaattttcactgtaatcacacaagattacaattt 17133429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 16175735 - 16175792
Alignment:
Q  134 ccataatttgaggttaatccagcccccttgcattttcaagagaattttcactataatcaa 193  Q
    |||||||| ||||||| ||||  | ||||||||||||||||||  |||||||||||||||    
T  16175735 ccataattcgaggttagtccaatctccttgcattttcaagaga--tttcactataatcaa 16175792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 21546373 - 21546293
Alignment:
Q  181 tcactataatcaaacaagattacaatttgtcaaacacacaagtttgagacttccatgcctcatacaagaggaattatacaa 261  Q
    |||||||||||| ||||||||| ||||  || |||||||||||  | |||||||  |||||| |||||| || ||||||||    
T  21546373 tcactataatcacacaagattataattgttccaacacacaagtcagtgacttcctcgcctcacacaagacgacttatacaa 21546293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 159 - 613
Target Start/End: Complemental strand, 25955140 - 25954691
Alignment:
Q  159 ccttgcattttcaagagaattttcactataatcaaacaagattacaatttgtcaaacacacaagtttgagacttccatgcctcatacaagaggaattata 258  Q
    |||||||||||||| ||||||||||||||||||  ||||||||||||||  | | |||||||||| | ||| |||  ||||| | ||||||||| || ||    
T  25955140 ccttgcattttcaa-agaattttcactataatcgcacaagattacaattatttagacacacaagtctaagatttcattgccttacacaagaggacttcta 25955042  T
Q  259 caaccaaattttacaacaaataaaattggttgtttacacttt-gtactcgaagtgtggtaaactaaacttgaagtttaattaacttctgaccctaagaaa 357  Q
    ||| || | ||||||| |  | ||  ||  |||||| ||||| |||||| ||| ||| |||||||| ||| || || || |||||||| || ||||||||    
T  25955041 caatcagagtttacaaaatttgaa--tg--tgtttaaacttttgtactcaaagagtgataaactaa-ctttaatttcaagtaacttctaacactaagaaa 25954947  T
Q  358 ttctaagatttgaagtttgtgagaattttctaagtgcttttgcgcttttgaatttgaaagaattttgtcactagtaaaatatatatgttcacttaatttc 457  Q
    ||||||||| | |||||||| ||||||||||||||| || ||| ||||| ||||||| ||| ||||| |||| ||||||||| |    || | ||| |||    
T  25954946 ttctaagatataaagtttgtaagaattttctaagtgtttgtgcacttttaaatttgacagagttttgacacttgtaaaatatgtgaagtctcataagttc 25954847  T
Q  458 ttcagactgctcaggtcctcgtataagagagaaatgagagagttgttgtttgaagagtgttagtgcatcaaattcatcctag-gaagctttgaatcagtt 556  Q
    |||| ||| |||| |||||  |||| ||||||||| ||||||  |||||||||||||||| || ||||||| ||| || | | ||||||||| ||||  |    
T  25954846 ttcaaacttctcatgtccttatataggagagaaataagagagccgttgtttgaagagtgtcagcgcatcaagttcgtcattgagaagctttg-atcaaat 25954748  T
Q  557 ttgaaaacattgcctttaatggataatgatgttgaatagtactacataggtcctttg 613  Q
    |||||||| |||||  |||| |||||||   ||||||| ||||| ||  ||||||||    
T  25954747 ttgaaaactttgccactaattgataatgtcattgaataatactagatgagtcctttg 25954691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 252
Target Start/End: Original strand, 19761120 - 19761235
Alignment:
Q  138 aatttgaggttaatccagcccccttgcattttcaagagaattttcactataatcaaacaagattacaatttg-tcaaacacacaagtttgagacttccat 236  Q
    |||||||||||| ||||  ||||||||| ||||||| || ||||||||||||||| | |||||||||| ||| ||||||| ||  ||  ||||||||| |    
T  19761120 aatttgaggttagtccattccccttgcactttcaagtgatttttcactataatcacataagattacaacttgctcaaacatacgggtaagagacttcctt 19761219  T
Q  237 gcctcatacaagagga 252  Q
    |||||| |||||||||    
T  19761220 gcctcacacaagagga 19761235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 11849159 - 11849076
Alignment:
Q  178 ttttcactataatcaaacaagattacaatttgtcaaacacacaagtttgagacttccatgcctcatacaagaggaattatacaa 261  Q
    |||| |||||||||| |||||||||||||| ||| ||||||||||| ||||| |||| ||| |  ||||| |||| ||||||||    
T  11849159 tttttactataatcacacaagattacaattggtccaacacacaagtctgagatttccttgcgttgtacaaaaggacttatacaa 11849076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 353 - 439
Target Start/End: Complemental strand, 16687810 - 16687724
Alignment:
Q  353 agaaattctaagatttgaagtttgtgagaattttctaagtgcttttgcgcttttgaatttgaaagaattttgtcactagtaaaatat 439  Q
    ||||||||||||||   |||||||| |||||||| |||||| |  || | |||||||||||| ||| ||||| |||| |||||||||    
T  16687810 agaaattctaagatactaagtttgtaagaattttttaagtgttcgtgtgtttttgaatttgacagagttttgacacttgtaaaatat 16687724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 351 - 613
Target Start/End: Original strand, 34487921 - 34488183
Alignment:
Q  351 taagaaattctaagatttgaagtttgtgagaattttctaagtgcttttgcgcttttgaatttgaaagaattttgtcactagtaaaatatatatgttcact 450  Q
    ||||||||||||||||    | ||||| ||||||||||||||| || | ||||||||||||||| ||| ||||| ||||  |||||| |||    || ||    
T  34487921 taagaaattctaagatgctcaatttgtaagaattttctaagtgtttgtacgcttttgaatttgacagagttttgacacttttaaaatctatgcagtctct 34488020  T
Q  451 taatttcttcagactgctcaggtcctcgtataagagagaaatgagagagttgttgtttgaagagtgttagtgcatcaaattcatcctag-gaagctttga 549  Q
    ||||||||||| | || |||||||||  |||| ||| ||||||||||||  |||||||||||||||| |||||||||||||| | || | |||| ||| |    
T  34488021 taatttcttcaaattgttcaggtccttatataggagtgaaatgagagagccgttgtttgaagagtgtcagtgcatcaaattcgttcttgagaag-tttta 34488119  T
Q  550 atcagttttgaaaacattgcctttaatggataatgatgttgaatagtactacataggtcctttg 613  Q
    ||||| ||||||||| |||||| ||||| |||| |  |||||||||||||| |  |||||||||    
T  34488120 atcagatttgaaaactttgcctctaatgaataaagtcgttgaatagtactagaggggtcctttg 34488183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 121 - 261
Target Start/End: Original strand, 34487702 - 34487842
Alignment:
Q  121 atcctggttcatcccataatttgaggttaatccagcccccttgcattttcaagagaattttcactataatcaaacaagattacaatttgtcaaacacaca 220  Q
    ||||| ||| |||||||| |  ||||||| ||||| | ||||||| || | |  |||||||||||||||||| ||||||||||||||| || ||||||||    
T  34487702 atcctagtttatcccatattccgaggttagtccagtctccttgcacttcccatggaattttcactataatcacacaagattacaatttctccaacacaca 34487801  T
Q  221 agtttgagacttccatgcctcatacaagaggaattatacaa 261  Q
    |||| ||||||||| |  |||| |||||| || ||||||||    
T  34487802 agttagagacttccttaactcacacaagatgacttatacaa 34487842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 274
Target Start/End: Original strand, 11832976 - 11833113
Alignment:
Q  138 aatttgaggttaatccagcccccttgcattttcaagagaattttcactataatcaaacaagattacaatttgtcaaacacacaagtttgagacttccatg 237  Q
    |||| ||||||| | ||| |||||| || ||||||  || ||||||||||||| | |||| |||||||||  |||||||||||||||| |||||||| ||    
T  11832976 aattcgaggttagttcagtccccttacactttcaatggatttttcactataattacacaaaattacaattgctcaaacacacaagttttagacttccttg 11833075  T
Q  238 cctcatacaagaggaattatacaaccaaa-ttttacaa 274  Q
    ||||| | |||| || || ||||| |||| ||||||||    
T  11833076 cctcacataagaagacttttacaatcaaagttttacaa 11833113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 15571002 - 15570884
Alignment:
Q  143 gaggttaatccagcccccttgcattttcaagagaattttcactataatcaaacaagattacaatttgtcaaacacacaagtttgagacttcca-tgcctc 241  Q
    ||||||| ||||  ||||||||||||||| || | ||||||||| ||||| ||||||||||||||  | |||||||||||| | ||| | ||| ||||||    
T  15571002 gaggttagtccaatccccttgcattttcatgaaatttttcactagaatcacacaagattacaattgtttaaacacacaagtctaaga-taccattgcctc 15570904  T
Q  242 atacaagaggaattatacaa 261  Q
    |||||||| || ||||||||    
T  15570903 atacaagatgacttatacaa 15570884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 313 - 390
Target Start/End: Complemental strand, 20817748 - 20817671
Alignment:
Q  313 tggtaaactaaacttgaagtttaattaacttctgaccctaagaaattctaagatttgaagtttgtgagaattttctaa 390  Q
    |||||||| ||| || ||||| || ||||||||||| ||||||||| |||| || | |||||||| ||||||||||||    
T  20817748 tggtaaacaaaaattaaagttcaagtaacttctgacactaagaaatcctaaaatataaagtttgtaagaattttctaa 20817671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 498 - 597
Target Start/End: Complemental strand, 12901157 - 12901058
Alignment:
Q  498 agttgttgtttgaagagtgttagtgcatcaaattcatcctag-gaagctttgaatcagttttgaaaacattgcctttaatggataatgatgttgaatagt 596  Q
    |||||||||||||||| ||| || ||||||||||| |||| | ||||  |||| |||| ||| ||||| ||| |||||||||||||||  ||||||||||    
T  12901157 agttgttgtttgaagaatgtcagcgcatcaaattcgtccttgagaagtgttga-tcagatttaaaaactttgtctttaatggataatgtcgttgaatagt 12901059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 144 - 261
Target Start/End: Complemental strand, 26858856 - 26858738
Alignment:
Q  144 aggttaatccagcccccttgcattttcaagagaattttcactataatcaaacaagattacaa-tttgtcaaacacacaagtttgagacttccatgcctca 242  Q
    |||||| | ||| ||||||||| || ||| ||| ||||||||||||||| || || |||||| ||| ||||||||||||||  || |||| | || ||||    
T  26858856 aggttagttcagtccccttgcacttccaaaagatttttcactataatcacactaggttacaattttctcaaacacacaagtaagaaactttcttgactca 26858757  T
Q  243 tacaagaggaattatacaa 261  Q
     ||||||||| || |||||    
T  26858756 cacaagaggacttctacaa 26858738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 18515490 - 18515534
Alignment:
Q  178 ttttcactataatcaaacaagattacaatttgtcaaacacacaag 222  Q
    ||||||||||||||| ||||||||||||||  |||| ||||||||    
T  18515490 ttttcactataatcacacaagattacaattgctcaagcacacaag 18515534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 23917326 - 23917370
Alignment:
Q  178 ttttcactataatcaaacaagattacaatttgtcaaacacacaag 222  Q
    ||||||||||||||| ||||||||||||||  |||| ||||||||    
T  23917326 ttttcactataatcacacaagattacaattgctcaagcacacaag 23917370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 125 - 600
Target Start/End: Original strand, 18114228 - 18114705
Alignment:
Q  125 tggttcatcccataatttgaggttaatccagcccccttgcattttcaagagaattttcactataatcaaacaagattacaatttgtcaaacacacaagtt 224  Q
    ||||| ||| |||| | |||||||| ||||| ||||||  | || ||||| | ||||||||||||||| |||| ||||||| |  || ||||||||||||    
T  18114228 tggtttatctcatattctgaggttagtccagtccccttatacttccaagatatttttcactataatcacacaaaattacaagtgctccaacacacaagtt 18114327  T
Q  225 tgagacttccatgcctcatacaagaggaattatacaa-ccaaattttacaacaaataaaattggt--tgtttac--actttgtactcgaagtgtggtaaa 319  Q
    ||| |||||| ||||||| ||||||| | |||||||| || | ||||  |  ||||||  ||| |  |||||||  ||||||||||| ||| ||||||||    
T  18114328 tgaaacttccttgcctcaaacaagagtacttatacaatccgagtttt--attaaataagtttgattgtgtttacgtactttgtactcaaagagtggtaaa 18114425  T
Q  320 ctaaacttgaagtttaattaacttctgaccctaagaaattctaagatttgaagtttgtgagaattttctaagtgcttttgcgcttttgaatttgaaagaa 419  Q
    ||||| || ||| | |  ||||||||||| |||| ||||| |||||| | |||||||| ||||||||||  ||| || ||||||||||||| || || |     
T  18114426 ctaaa-ttaaagctcaggtaacttctgacactaaaaaattataagatataaagtttgtaagaattttctttgtgtttgtgcgcttttgaatatgcaa-ag 18114523  T
Q  420 ttttgtcactagtaaaatatatatg--ttcacttaatttcttcagactgctcaggtcctcgtataagagagaaatgagagagttgttgtttgaagagtgt 517  Q
    ||||| |||| |||||| |||  ||  ||| ||| ||||||||| | |  ||| ||||| ||||| ||||||||||||| |||  ||||||||||| ||     
T  18114524 ttttggcacttgtaaaa-atacttgaattctcttgatttcttcaaatttttcatgtccttgtataggagagaaatgagaaagtcattgtttgaagattgc 18114622  T
Q  518 tagtgcatcaaattcatcctag-gaagctttgaatcagttttgaaaacattgcctttaatggataatgatgttgaatagtacta 600  Q
     |  ||||||||||| |||| | ||||||||| |||   ||||||||| |||||| ||||||||| |   ||||||||||||||    
T  18114623 caacgcatcaaattcgtccttgagaagctttg-atcgtatttgaaaactttgcctctaatggatagtatcgttgaatagtacta 18114705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 339 - 510
Target Start/End: Complemental strand, 16195657 - 16195486
Alignment:
Q  339 aacttctgaccctaagaaattctaagatttgaagtttgtgagaattttctaagtgcttttgcgcttttgaatttgaaagaattttgtcactagtaaaata 438  Q
    |||||||||| |||||||||| |||||| | | |||||| ||||||||| ||||| ||  ||  |||| ||||||| ||| ||||| |||| |||||| |    
T  16195657 aacttctgacactaagaaattttaagatattatgtttgtaagaattttcaaagtgtttgagcaattttaaatttgatagagttttgacacttgtaaaaga 16195558  T
Q  439 tatatgttcacttaatttcttcagactgctcaggtcctcgtataagagagaaatgagagagttgttgtttga 510  Q
    ||| |  || ||||||||||||| ||||||||||| ||  |||| || | | |||||||||  |||||||||    
T  16195557 tatgtaatctcttaatttcttcaaactgctcaggtacttatataggacatatatgagagagccgttgtttga 16195486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 160 - 366
Target Start/End: Original strand, 30461965 - 30462171
Alignment:
Q  160 cttgcattttcaagagaattttcactataatcaaacaagattacaatttgtcaaacacacaagtttgagacttccatgcctcatacaagaggaattatac 259  Q
    |||||| ||||||  || ||||||||||||| | ||||||||||||||  |||| |||||||  || |||||||| || |||| ||||||||| |||||     
T  30461965 cttgcactttcaatggatttttcactataattacacaagattacaattgctcaagcacacaaaattaagacttccttgtctcacacaagaggacttataa 30462064  T
Q  260 aaccaaattttacaacaaataaaattg-gt-tgtttacactttgtactcgaagtgtggtaaactaaacttgaagtttaattaacttctgaccctaagaaa 357  Q
    || || | |||  | |||||||| ||| || |||||||||||| || ||  || ||||||||| |||||| || |  ||  |||| ||||| ||||||||    
T  30462065 aatcatagttt--atcaaataaatttgtgtgtgtttacactttataatcagagagtggtaaacaaaacttaaattacaagaaactcctgacactaagaaa 30462162  T
Q  358 ttctaagat 366  Q
    |||||||||    
T  30462163 ttctaagat 30462171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 27919019 - 27918937
Alignment:
Q  178 ttttcactataatcaaacaagattacaatttgtcaaacacacaagtttgagacttccatgcctcatacaagaggaattatacaa 261  Q
    |||||| |||||||| ||||||||||||||  || || ||||||||  ||||||||| || |||||||||||||| ||||||||    
T  27919019 ttttcattataatcacacaagattacaattgctccaatacacaagtcagagacttccttg-ctcatacaagaggacttatacaa 27918937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 309 - 511
Target Start/End: Complemental strand, 35512583 - 35512381
Alignment:
Q  309 agtgtggtaaactaaacttgaagtttaattaacttctgaccctaagaaattctaagatttgaagtttgtgagaattttct-aagtgcttttgcgcttttg 407  Q
    ||||||||||||||| ||| |||||  |  ||||||  || |||||||||  ||||||   |||||||| |||||||| | || || || ||| || |||    
T  35512583 agtgtggtaaactaa-cttaaagttcgagaaacttcatacactaagaaatgttaagatactaagtttgtaagaatttttttaattgtttgtgcactcttg 35512485  T
Q  408 aatttgaaagaattttgtcactagtaaaatatatatgttcacttaatttcttcagactgctcaggtcctcgtataagagagaaatgagagagttgttgtt 507  Q
    ||||||| ||| ||||| |||| ||||||||| | |  |  |||| |||||||| ||| ||||||||||  |||| ||||||||||||| ||| ||||||    
T  35512484 aatttgatagagttttgacacttgtaaaatatgtgtagtatcttattttcttcaaacttctcaggtccttatataggagagaaatgagaaagtagttgtt 35512385  T
Q  508 tgaa 511  Q
    ||||    
T  35512384 tgaa 35512381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 598
Target Start/End: Original strand, 30462584 - 30462680
Alignment:
Q  502 gttgtttgaagagtgttagtgcatcaaattcatcc-taggaagctttgaatcagttttgaaaacattgcctttaatggataatgatgttgaatagtac 598  Q
    |||||||||| ||||||||||| |||||||||||| |  ||||||||| ||||  ||||||| | |||||| ||||||||||||  ||| ||||||||    
T  30462584 gttgtttgaaaagtgttagtgcgtcaaattcatcctttagaagctttg-atcatatttgaaagctttgcctctaatggataatgtcgttaaatagtac 30462680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 33240196 - 33240248
Alignment:
Q  170 caagagaattttcactataatcaaacaagattacaatttgtcaaacacacaag 222  Q
    ||||||| ||||||||||||||| ||||||||||||||  |||| ||||||||    
T  33240196 caagagatttttcactataatcacacaagattacaattgctcaagcacacaag 33240248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 33248117 - 33248169
Alignment:
Q  170 caagagaattttcactataatcaaacaagattacaatttgtcaaacacacaag 222  Q
    ||||||| ||||||||||||||| ||||||||||||||  |||| ||||||||    
T  33248117 caagagatttttcactataatcacacaagattacaattgctcaagcacacaag 33248169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 22111403 - 22111286
Alignment:
Q  143 gaggttaatccagcccccttgcattttcaagagaattttcactataatcaaacaagattacaatttgtcaaacacacaagtttgagacttccatgcctca 242  Q
    ||||||| | ||| |||||| || ||||||| || ||| ||||||||||| |||||| |||||||  || || ||||||||  ||||||| | |||||||    
T  22111403 gaggttagttcagtccccttacaatttcaaggga-tttacactataatcacacaagaatacaattgctctaagacacaagtcagagacttgcttgcctca 22111305  T
Q  243 tacaagaggaattatacaa 261  Q
     ||||||||| || |||||    
T  22111304 cacaagaggacttctacaa 22111286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 42298120 - 42298062
Alignment:
Q  177 attttcactataatcaaacaagattacaatttg-tcaaacacacaagtttgagacttcc 234  Q
    |||||||||||||||  |||||||||||||||| ||||||||| ||||  |||||||||    
T  42298120 attttcactataatcgcacaagattacaatttgatcaaacacataagtaagagacttcc 42298062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 16735610 - 16735573
Alignment:
Q  170 caagagaattttcactataatcaaacaagattacaatt 207  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  16735610 caagagatttttcactataatcacacaagattacaatt 16735573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 29966987 - 29966914
Alignment:
Q  178 ttttcactataatcaaacaagattacaatttgtcaaacacacaagtttgagacttccatgcctcatacaagagg 251  Q
    ||||| ||||||| | ||||||||||||||  || |||||||||||  || |||||| ||||||| ||||||||    
T  29966987 ttttcgctataattacacaagattacaattgctccaacacacaagtcagatacttccttgcctcacacaagagg 29966914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 40203004 - 40202956
Alignment:
Q  173 gagaattttcactataatcaaacaagattacaatttgtcaaacacacaa 221  Q
    |||| ||||||||||||||| ||||||||||||||  |||| |||||||    
T  40203004 gagatttttcactataatcacacaagattacaattgttcaagcacacaa 40202956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 293
Target Start/End: Original strand, 3771 - 3886
Alignment:
Q  178 ttttcactataatcaaacaagattacaatttgtcaaacacacaagtttgagacttccatgcctcatacaagaggaattatacaaccaaattttacaacaa 277  Q
    |||||| || ||||| |||||||||||| || | ||||||| |||||||||| |||| ||||||| |||||||   ||||||||  | | ||||||||||    
T  3771 ttttcaatacaatcacacaagattacaacttcttaaacacataagtttgagatttccttgcctcacacaagagaccttatacaataagagtttacaacaa 3870  T
Q  278 ataaaattggttgttt 293  Q
     ||| |||||||||||    
T  3871 ttaagattggttgttt 3886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 9910 - 9837
Alignment:
Q  151 tccagcccccttgcattttcaagagaattttcactataatcaaacaagattacaatttg-tcaaacacacaagt 223  Q
    ||||| ||||||||| || |||  || ||||||||||||||| |||| |||||| |||| ||||||||||||||    
T  9910 tccagtccccttgcacttccaatggatttttcactataatcacacaatattacagtttgctcaaacacacaagt 9837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 19121747 - 19121684
Alignment:
Q  351 taagaaattctaagatttgaagtttgtgagaattttctaagtgcttttgcgcttttgaatttga 414  Q
    ||||||||||||||||   |||||||| ||||||||||||||| || |||||||||||||||||    
T  19121747 taagaaattctaagatactaagtttgtaagaattttctaagtgtttgtgcgcttttgaatttga 19121684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 27685546 - 27685606
Alignment:
Q  175 gaattttcactataatcaaacaagattacaatttg-tcaaacacacaagtttgagacttcc 234  Q
    |||||||||||||||||| ||| |||||||||||| ||||||||||||||  |||||||||    
T  27685546 gaattttcactataatcacacaggattacaatttgctcaaacacacaagtaagagacttcc 27685606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 19225276 - 19225334
Alignment:
Q  164 cattttcaagagaattttcactataatcaaacaagattacaatttgtcaaacacacaag 222  Q
    ||||| ||||||| ||||||| ||||||||||||||||||||||  |||| ||||||||    
T  19225276 catttacaagagatttttcaccataatcaaacaagattacaattgctcaagcacacaag 19225334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 2121016 - 2120947
Alignment:
Q  178 ttttcactataatcaaacaagattacaatttgtcaaacacacaagtttgagacttccatgcctcatacaa 247  Q
    ||||||||||||||| |||||||||||| |  | ||||| ||||||||||||| |||||| |||| ||||    
T  2121016 ttttcactataatcacacaagattacaactgctaaaacatacaagtttgagacatccatgtctcaaacaa 2120947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 12412295 - 12412243
Alignment:
Q  170 caagagaattttcactataatcaaacaagattacaatttgtcaaacacacaag 222  Q
    ||||||| |||||||||||||||  |||||||||||||| |||| ||||||||    
T  12412295 caagagatttttcactataatcacgcaagattacaatttctcaagcacacaag 12412243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 17769685 - 17769625
Alignment:
Q  173 gagaattttcactataatcaaacaagattacaatttgtcaaacacacaagtttgagacttc 233  Q
    |||| ||||||||||||||| ||||||||||||||  |||| ||||||||  |||||||||    
T  17769685 gagatttttcactataatcacacaagattacaattgctcaagcacacaagcatgagacttc 17769625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 19070986 - 19070926
Alignment:
Q  173 gagaattttcactataatcaaacaagattacaatttgtcaaacacacaagtttgagacttc 233  Q
    |||| ||||||||||||||| ||||||||||||||  |||| ||||||||  |||||||||    
T  19070986 gagatttttcactataatcacacaagattacaattgctcaagcacacaagcatgagacttc 19070926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 13494858 - 13494924
Alignment:
Q  157 ccccttgcattttcaagagaattttcactataatcaaacaagattacaatttgtcaaacacacaagt 223  Q
    ||||||||| || |||  || ||||| ||||||||||||||||||||||||  || |||||||||||    
T  13494858 ccccttgcacttccaaatgatttttcgctataatcaaacaagattacaattgctcgaacacacaagt 13494924  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 324
Target Start/End: Original strand, 18773387 - 18773533
Alignment:
Q  178 ttttcactataatcaaacaagattacaatttgtcaaacacacaagtttgagacttccatgcctcatacaagaggaattatacaaccaaattttacaacaa 277  Q
    |||||| |||||||| |||||| || || |  ||||||||| |||||||||| |||  ||| ||| ||  ||||| |||||||| |||||||||||||||    
T  18773387 ttttcaatataatcacacaagagtataactgctcaaacacataagtttgagatttctttgcgtcacac--gaggagttatacaatcaaattttacaacaa 18773484  T
Q  278 ataaaattggtt--gtttacactttgtactcgaagtgtggtaaactaaa 324  Q
    ||||  ||| ||  |||||||||||||||||  || |||| ||||||||    
T  18773485 ataagtttgattgggtttacactttgtactcatagagtggcaaactaaa 18773533  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 12870700 - 12870654
Alignment:
Q  161 ttgcattttcaagagaattttcactataatcaaacaagattacaatt 207  Q
    ||||| |||||||||| |||| |||||||||| ||||||||||||||    
T  12870700 ttgcactttcaagagattttttactataatcacacaagattacaatt 12870654  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 31720277 - 31720228
Alignment:
Q  173 gagaattttcactataatcaaacaagattacaatttgtcaaacacacaag 222  Q
    |||| ||||||||||||||| ||||||||||||||  |||| ||||||||    
T  31720277 gagatttttcactataatcacacaagattacaattgttcaagcacacaag 31720228  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 14760503 - 14760551
Alignment:
Q  213 aacacacaagtttgagacttccatgcctcatacaagaggaattatacaa 261  Q
    |||||||||||  ||||||||| ||||||| ||||||||| ||||||||    
T  14760503 aacacacaagtcagagacttccgtgcctcacacaagaggacttatacaa 14760551  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 33545793 - 33545869
Alignment:
Q  166 ttttcaagagaattttcactataatcaaacaagattacaatttgtcaaacacacaagtttgagacttccatgcctca 242  Q
    ||||||||||| ||||||| ||||||| |||||||||| |||  | | |||||||||| | ||| ||||||| ||||    
T  33545793 ttttcaagagatttttcacaataatcacacaagattaccattacttagacacacaagtctaagatttccatgtctca 33545869  T

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Target: scaffold0042 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 89751 - 89665
Alignment:
Q  157 ccccttgcattttcaagagaattttcactataatcaaacaagattacaatttg-tcaaacacacaagtttgagacttccatgcctcat 243  Q
    ||||||||| |||||| ||| |||||||| ||||||||||||||||||||||| |||||| |||| ||  ||||||||| | ||||||    
T  89751 ccccttgcactttcaaaaga-ttttcactttaatcaaacaagattacaatttgctcaaacgcacatgtaagagacttcctttcctcat 89665  T

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Target: scaffold0606 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 4994 - 5031
Alignment:
Q  170 caagagaattttcactataatcaaacaagattacaatt 207  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  4994 caagagatttttcactataatcatacaagattacaatt 5031  T

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Target: scaffold0340 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 17452 - 17489
Alignment:
Q  170 caagagaattttcactataatcaaacaagattacaatt 207  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  17452 caagagatttttcactataatcacacaagattacaatt 17489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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