View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4356-Insertion-7 (Length: 551)
Name: NF4356-Insertion-7
Description: NF4356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4356-Insertion-7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 8 - 551
Target Start/End: Complemental strand, 2663450 - 2662905
Alignment:
| Q |
8 |
atttggtcctgtatacaaagtaaattgctatttctctttgtgattattttggtcctctacacaaacatactagtgtataacaactttcttccagtaggca |
107 |
Q |
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| T |
2663450 |
atttggtcctgtatacaaagtaaattgctatttctctttgtgattattttggtcctctacacaaacatactaatgtataacaactttcttccagtaggca |
2663351 |
T |
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| Q |
108 |
tgataggaaaaaattcaacaactacaattaatttaatctaaacttttaagctttgatgttat--ttctttccagcatatttttccactatggtacgcttc |
205 |
Q |
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| T |
2663350 |
tgataggaaaaaattcaacaactacaattaatttaatctaaacttttaagctttgatgttatatttctttccaacatattttaccactatggtacacttc |
2663251 |
T |
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| Q |
206 |
aaaatagtactattttctacaaataagaatttaaggtcatgtttggtttgaggttattgtcatctatcttttagtagttgtaattagttgatccaaatct |
305 |
Q |
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| T |
2663250 |
aaaatagtactattttctacaaataaaaatttaaggtcatgtttggtttgaggttattatcatctatcttttagtagttgtaattagttgatccaaatct |
2663151 |
T |
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| Q |
306 |
aatcattcgaagtgccagttgaagctgtccaatttcttgcaaaacaagttttagtatgtttggttgatttttccatcaagaaaaggtaccaaagctactt |
405 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2663150 |
aatcattcaaagtgccagttgaagctttccaatttcttgcaaaacaagttttagtaagtttggttgatttttccatcaagaaaaggtaccaaagctactt |
2663051 |
T |
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| Q |
406 |
accctcttagttttacaacaactatgataatatcttggatctgttgtaacttttagggccagcttccatctggacaagaaatagcagtgaaaaggctctc |
505 |
Q |
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| T |
2663050 |
accctcttagttttacaacaactatgataatatcttggatctgttgtaacttttagggccagcttccatctggacaagaaatagcagtgaaaaggctctc |
2662951 |
T |
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| Q |
506 |
ggagaattctggacaaggcttgcaagaattcaagaatgaggtcata |
551 |
Q |
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| T |
2662950 |
ggagaattctggacaaggcttgcaagaattcaagaatgaggtcata |
2662905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 544
Target Start/End: Complemental strand, 3979525 - 3979461
Alignment:
| Q |
480 |
caagaaatagcagtgaaaaggctctcggagaattctggacaaggcttgcaagaattcaagaatga |
544 |
Q |
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| T |
3979525 |
caagagatagctgtgaaaaggctttcaaagaagtctggacaagggttgcaggaattcaaaaatga |
3979461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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