View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4356-Insertion-8 (Length: 450)
Name: NF4356-Insertion-8
Description: NF4356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4356-Insertion-8 |
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| [»] chr5 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 41 - 450
Target Start/End: Complemental strand, 40546260 - 40545851
Alignment:
| Q |
41 |
catggaaaatttgagaactatatcattcaaataagtcagccaaatattactgtgtctctgtttgaaaatcaaggagaccacactgttttgtaaggaaaat |
140 |
Q |
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| T |
40546260 |
catggaaaatttgagaactatatcattcaaataagtcagccaaatattactgtgtttctgtttgaaaatcaaggagaccacactgttttgtaaggaaaat |
40546161 |
T |
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| Q |
141 |
ttgaacctggtaaatgagagttttacaaagtaaaactgataaaacttcaaatatctctatcatctcaatatttggaaatataggcaattcagcatagata |
240 |
Q |
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| T |
40546160 |
ttgaacctggtaaatgagagttttacaaagtaaaaatgataaaacttcaaatatctctatcatctcaatatttggaaatataggcaattcagcatagatg |
40546061 |
T |
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| Q |
241 |
taaagtgccgtcgtaataaatgtaaactgcagtcatttcaaacaagtgtttcaatcagatgcattactttccttcatgattgctaaaattaatccgtata |
340 |
Q |
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| T |
40546060 |
taaagtggcgtcataataaatgtaaactgcagtcatttcaaacaagtgtttcaatcagatgcattactttctttcacgattactaaaattaatccgtata |
40545961 |
T |
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| Q |
341 |
aataatttctctttgaatcaaacgtataaattttatcaaatcataaattctgaaaataaattactacagctcagacaaggaaacatgaaggttcaatcca |
440 |
Q |
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| T |
40545960 |
aataatttctctttgaatcaaacgtataaattttatcaaatcataaattctgaaaataaattactacagctcagacaaggaaacatgaaggttcaatcca |
40545861 |
T |
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| Q |
441 |
aatgcaaaag |
450 |
Q |
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| T |
40545860 |
aatgcaaaag |
40545851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 208 - 373
Target Start/End: Complemental strand, 31790423 - 31790258
Alignment:
| Q |
208 |
atatttggaaatataggcaattcagcatagatataaagtgccgtcgtaataaatgtaaactgcagtcatttcaaacaagtgtttcaatcagatgcattac |
307 |
Q |
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| T |
31790423 |
atatttggaaatataggcaattcatcatagatgtaaagtggcatcatactaaatgtaatctgcggtcatttcaaacaggcgttttaatcggatgcattac |
31790324 |
T |
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| Q |
308 |
tttccttcatgattgctaaaattaatccgtataaataatttctctttgaatcaaacgtataaattt |
373 |
Q |
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| T |
31790323 |
tttctttcgaaattactaaggttaatccgtataaataatttctatttgaatcaaacgtataaattt |
31790258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 31790835 - 31790792
Alignment:
| Q |
43 |
tggaaaatttgagaactatatcattcaaataagtcagccaaata |
86 |
Q |
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| T |
31790835 |
tggaaaatatgagaactatatcattcaaacgagtcagccaaata |
31790792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 324 - 450
Target Start/End: Complemental strand, 5163233 - 5163105
Alignment:
| Q |
324 |
taaaattaatccgtataaataatttctctttgaatcaaacgtataaattt----tatcaaatcataaattctgaaaataaattactacagctcagacaag |
419 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||| | || || ||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
5163233 |
taaagttaatccgtagaaataatttctctttgaatcaaacgtttgaacttagtttatcaaatcataaattctgaaaataaattactacaactcag--aag |
5163136 |
T |
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| Q |
420 |
gaaacatgaaggttcaatccaaatgcaaaag |
450 |
Q |
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| T |
5163135 |
gaaacatgaaggttcaatccaaatgcaaaag |
5163105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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