View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4356-Insertion-9 (Length: 432)
Name: NF4356-Insertion-9
Description: NF4356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4356-Insertion-9 |
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| [»] chr8 (3 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 8 - 432
Target Start/End: Complemental strand, 44721987 - 44721563
Alignment:
| Q |
8 |
ttcttctcctttaaagaaagctttttatgatttctattccgacaagtactctcaataaaacaagtggatacttacaacagctagtttacgttcaaatttt |
107 |
Q |
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| T |
44721987 |
ttcttcccctttaaagaaagctttttatgatttctattccgacaagtactctcaataaaacaagtggatacttacaacagctagtttacgttcaaatttt |
44721888 |
T |
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| Q |
108 |
tcataacccgctatttgatgattgatatttagtttttaaattaggattgactttattaaagttcaatttaggatgtcattgatctgtattaggctagcga |
207 |
Q |
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| T |
44721887 |
tcataacccgctgtttgatgattgatatgtagtttttaaattaggattgactttattaaagttcaatttaggatgtcattgatctgtattaggctagcgc |
44721788 |
T |
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| Q |
208 |
ttgaagttcgcaacattactggtctgtaagcttcagttttatccgtttatcgtcatgtttttgctgaagtatctgataactttctcaagttaattacttc |
307 |
Q |
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| T |
44721787 |
ttgaagttcgcaacattactggtctgtaagcttcagttttatccgtttatcgtcatgtttttgctgaagtatctgataactttctcaagttaattacttc |
44721688 |
T |
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| Q |
308 |
ctggctgcattcatttattcaataaagggtggcgttaaaactgaagggtcatattatataccctattccaaattaggcttgccaacttctagtgcaagct |
407 |
Q |
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| T |
44721687 |
ctggctgcattcatttattcaataaagggtggcgttaaaactgaagggtcatattatataccctattccaaattacgcttgccaacttctagtgcaagct |
44721588 |
T |
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| Q |
408 |
aactccttttgtacatttaatcatc |
432 |
Q |
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| T |
44721587 |
aactccttttgtacatttaatcatc |
44721563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 43951777 - 43951731
Alignment:
| Q |
62 |
ataaaacaagtggatacttacaacagctagtttacgttcaaattttt |
108 |
Q |
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| T |
43951777 |
ataaaacaagtagatacttacaacagctggtttacgttcaatttttt |
43951731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 43951867 - 43951808
Alignment:
| Q |
10 |
cttctcctttaaagaaagctttttatgatttctattccgacaagtactctcaataaaaca |
69 |
Q |
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| T |
43951867 |
cttccccttgaaaggaaactgtttatgatttctattccaacaagtgctctcaataaaaca |
43951808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 364 - 432
Target Start/End: Complemental strand, 38673267 - 38673199
Alignment:
| Q |
364 |
tataccctattccaaattaggcttgccaacttctagtgcaagctaactccttttgtacatttaatcatc |
432 |
Q |
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| T |
38673267 |
tataccctattcctaattatgtttgcaaagttctagtacaagctaactccttttgtacatttaatcatc |
38673199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 38673516 - 38673451
Alignment:
| Q |
154 |
ttgactttattaaagttcaatttaggatgtcattgatctgtattaggctagcgattgaagttcgca |
219 |
Q |
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| T |
38673516 |
ttgacttcattaaggttcagtttaggatgtcactaatctgtattagtttagcgcttgaagttcgca |
38673451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 38673411 - 38673359
Alignment:
| Q |
243 |
gttttatccgtttatcgtcatgtttttgctgaagtatctgataactttctcaa |
295 |
Q |
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| T |
38673411 |
gttttatccgtttatcgtcttgtttttgctgaagcatcggataatgttctcaa |
38673359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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