View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4356_high_1 (Length: 684)

Name: NF4356_high_1
Description: NF4356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4356_high_1
NF4356_high_1
[»] chr1 (11 HSPs)
chr1 (19-674)||(8421245-8421901)
chr1 (460-674)||(338198-338411)
chr1 (346-451)||(338058-338164)
chr1 (327-451)||(43407901-43408027)
chr1 (348-590)||(26317178-26317426)
chr1 (304-433)||(21264753-21264884)
chr1 (375-444)||(36386859-36386929)
chr1 (601-656)||(9537278-9537335)
chr1 (460-516)||(36386764-36386820)
chr1 (478-590)||(43407776-43407888)
chr1 (176-260)||(8311366-8311450)
[»] chr7 (10 HSPs)
chr7 (19-451)||(49170422-49170869)
chr7 (457-674)||(49170174-49170391)
chr7 (121-451)||(12196711-12197038)
chr7 (460-674)||(12911601-12911815)
chr7 (334-451)||(12911849-12911966)
chr7 (304-451)||(10289325-10289474)
chr7 (304-445)||(48654379-48654522)
chr7 (563-674)||(22077858-22077970)
chr7 (478-590)||(10289200-10289312)
chr7 (358-445)||(22077644-22077732)
[»] chr4 (7 HSPs)
chr4 (457-674)||(55162272-55162489)
chr4 (460-674)||(40459044-40459254)
chr4 (327-451)||(40458885-40459010)
chr4 (341-451)||(55162130-55162241)
chr4 (346-445)||(69249-69349)
chr4 (601-674)||(28969093-28969167)
chr4 (474-544)||(41868770-41868840)
[»] chr5 (8 HSPs)
chr5 (472-674)||(40691007-40691210)
chr5 (463-670)||(30909884-30910093)
chr5 (358-451)||(40687556-40687649)
chr5 (373-449)||(30909772-30909845)
chr5 (358-445)||(38000856-38000944)
chr5 (389-445)||(6308666-6308722)
chr5 (520-590)||(38001023-38001093)
chr5 (375-443)||(27026649-27026718)
[»] chr2 (20 HSPs)
chr2 (460-674)||(36732063-36732280)
chr2 (460-674)||(40447571-40447784)
chr2 (348-674)||(40729298-40729628)
chr2 (460-674)||(18292613-18292830)
chr2 (160-358)||(22403559-22403757)
chr2 (266-383)||(41340857-41340974)
chr2 (358-451)||(18292864-18292957)
chr2 (20-96)||(36732736-36732812)
chr2 (346-451)||(40447431-40447537)
chr2 (304-433)||(32735455-32735586)
chr2 (358-451)||(36732462-36732552)
chr2 (197-316)||(36732564-36732683)
chr2 (478-590)||(41340680-41340792)
chr2 (460-505)||(36732321-36732366)
chr2 (345-433)||(1193596-1193685)
chr2 (130-182)||(41341000-41341052)
chr2 (359-445)||(44788527-44788614)
chr2 (373-445)||(29270661-29270734)
chr2 (348-445)||(28267695-28267793)
chr2 (413-451)||(36732400-36732437)
[»] chr3 (11 HSPs)
chr3 (130-227)||(11968236-11968333)
chr3 (304-451)||(7337228-7337377)
chr3 (297-388)||(11968089-11968180)
chr3 (345-451)||(43278381-43278488)
chr3 (478-590)||(7337103-7337215)
chr3 (478-590)||(43278256-43278368)
chr3 (231-314)||(16975129-16975212)
chr3 (377-440)||(8730831-8730895)
chr3 (377-440)||(9082718-9082782)
chr3 (375-445)||(9104202-9104273)
chr3 (348-445)||(17542816-17542914)
[»] scaffold0041 (2 HSPs)
scaffold0041 (601-670)||(33190-33259)
scaffold0041 (527-592)||(33284-33349)
[»] chr8 (8 HSPs)
chr8 (271-365)||(35839024-35839118)
chr8 (338-451)||(44436055-44436168)
chr8 (48-260)||(24422915-24423140)
chr8 (350-445)||(40841556-40841652)
chr8 (329-445)||(22816490-22816608)
chr8 (348-445)||(41958486-41958584)
chr8 (485-590)||(41958337-41958442)
chr8 (615-655)||(44436323-44436363)
[»] scaffold0413 (2 HSPs)
scaffold0413 (269-433)||(8759-8927)
scaffold0413 (165-194)||(8716-8745)
[»] scaffold1838 (1 HSPs)
scaffold1838 (600-656)||(444-502)
[»] chr6 (3 HSPs)
chr6 (251-365)||(10751658-10751772)
chr6 (304-365)||(13777332-13777393)
chr6 (349-445)||(24992418-24992514)
[»] scaffold0013 (1 HSPs)
scaffold0013 (323-433)||(243187-243299)


Alignment Details
Target: chr1 (Bit Score: 564; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 19 - 674
Target Start/End: Original strand, 8421245 - 8421901
Alignment:
Q  19 aatcaagccactcctttcttctctttttaaaattcatggaagtctaaggtatactctatgtcctttttattttgtttacttccatacttcaatctctaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8421245 aatcaagccactcctttcttctctttttaaaattcatggaagtctaaggtatactctatgtcctttttattttgtttacttccatacttcaatctctaaa 8421344  T
Q  119 ttcattgaagccattttcgttttcctcaaacatgtcatcgtagaattgcgactacgccttcgttcaccgtccgattaagctaatttttggacagcgtgtt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||    
T  8421345 ttcattgaagccattttcgttttcctcaaacatgtcatcgtagaattgcgattacgccttcgttcaccgtccgattgagctcatttttggacagcgtgtt 8421444  T
Q  219 cccaacatgcggttcttcgatttcaacggtctgatcgtcaaactaactcttggagtgagagaaaccgtgtcttcaccgtagctgtgagtttgaggtggtt 318  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  8421445 cccaacatgcggttcttcgatttcaacggtccggtcgtcaaactaactcctggactgagagaaaccatgtcttcaccgtagctgtgagtttgaggtggtt 8421544  T
Q  319 tagagttcgactagaaagaaaagctctcgaggtaaaggcttttt-cccatatgtacatactaagtgctaggctgtgttattaagtagaagtagcaattct 417  Q
    |||||||||||||||||||||||||||| |||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8421545 tagagttcgactagaaagaaaagctctcaaggtaagggctttttccccatacgtacatactaagtgctaggctgtgttattaagtagaagtagcaattct 8421644  T
Q  418 tgtcttttaaaaagaaaaataattaaaacgtattaagtagagtattattaattatgagtgattattcttaattatgttttatatgaaagttgtgtatgat 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8421645 tgtcttttaaaaagaaaaataattaaaacgtattaagtagagtattattaattatgagtgattattcttaattatgttttatatgaaagttgtgtatgat 8421744  T
Q  518 aatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaaagaaatgttacannnnnnngatgaattaaagaagaga 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||       ||| ||||||||||||||    
T  8421745 aatgtggtgtgaattgatatattttatattaatgcgctttatatgttcttgtgatgttggaaaagaaatgttacatttttttgattaattaaagaagaga 8421844  T
Q  618 aagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatg 674  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  8421845 aagatgaaaatgtgagtttgtgaaatgactgacttttggtttgtgtgcttgatgatg 8421901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 460 - 674
Target Start/End: Original strand, 338198 - 338411
Alignment:
Q  460 tattattaattatgagtgattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttat 559  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |  |||||||    
T  338198 tattattaattatgagtgattattcttaattatgttttatatgaaagtagtgtatgataatgtggtgtggattgatatattttatattattatgctttat 338297  T
Q  560 atgtttttgtgatcttggaaaagaaatgttacannnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggtt 659  Q
    ||| |||||||   |||||||||||||||||||       |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||    
T  338298 atg-ttttgtggcgttggaaaagaaatgttacattttcttgatgaattaaagaagaaaaagatgagaatgtgagtttgtgaaatgattgacttttggttt 338396  T
Q  660 gtgtgcttgatgatg 674  Q
    |||| ||||||||||    
T  338397 gtgtacttgatgatg 338411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 346 - 451
Target Start/End: Original strand, 338058 - 338164
Alignment:
Q  346 cgaggtaaaggctttttccc-atatgtacatactaagtgctaggctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaa 444  Q
    |||||||| ||||||||||| ||| || ||||||||||||||| || |||||||||||||| |||| |||||||||||| |||||||||||||| |||||    
T  338058 cgaggtaagggctttttccccatacgtccatactaagtgctagactatgttattaagtagaggtagtaattcttgtcttctaaaaagaaaaatagttaaa 338157  T
Q  445 acgtatt 451  Q
    |||||||    
T  338158 acgtatt 338164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 327 - 451
Target Start/End: Complemental strand, 43408027 - 43407901
Alignment:
Q  327 gactagaaagaaaagctctcgaggtaaaggcttttt-cccatatgtacatactaagtgctagg-ctgtgttattaagtagaagtagcaattcttgtcttt 424  Q
    |||||| |||||||||||||||||||| |||||||| |||||| || |||||||||||||||| |||||| ||||||||   |||| ||| ||||||||     
T  43408027 gactaggaagaaaagctctcgaggtaagggctttttccccatacgtccatactaagtgctaggactgtgtcattaagtaatggtagaaatgcttgtcttc 43407928  T
Q  425 taaaaagaaaaataattaaaacgtatt 451  Q
    |||||||||||| |||||||| |||||    
T  43407927 taaaaagaaaaacaattaaaatgtatt 43407901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 348 - 590
Target Start/End: Original strand, 26317178 - 26317426
Alignment:
Q  348 aggtaaaggctttttcccatatgtacatactaagtgctagg-ctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaac 446  Q
    |||||| |||||||||||| | || |||| ||||||||||| ||||| |||||| |||  ||||||||||||||||||||| |||||||||| ||||||     
T  26317178 aggtaagggctttttcccaaacgtccataataagtgctagggctgtggtattaaatagtggtagcaattcttgtcttttaagaagaaaaatagttaaaat 26317277  T
Q  447 gtattaagtagagtattatt-aat------tatgagtgattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatat 539  Q
    |||||    ||||||  ||| |||      ||  |||| |||||||||||| ||| |||||||| | |||||||||| |||||| |||  | ||||||||    
T  26317278 gtatttg--agagtaaaatttaatcttttctaaaagtggttattcttaattttgtattatatgatatttgtgtatgaaaatgtgatgtagaatgatatat 26317375  T
Q  540 tttatattaatgcgctttatatgtttttgtgatcttggaaaagaaatgtta 590  Q
    ||||| | | |  | ||||||| | |||||||| |||| ||||||||||||    
T  26317376 tttatgtgattatgttttatatatctttgtgatgttgggaaagaaatgtta 26317426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 304 - 433
Target Start/End: Complemental strand, 21264884 - 21264753
Alignment:
Q  304 gagtttgaggtggtttagagttcgactagaaagaaaagctctcgaggtaaaggcttttt-cccatatgtacatactaagtgcta-ggctgtgttattaag 401  Q
    |||||||||||||||||||||| | |||| ||| ||||||  |||||||| |||||||| |||||| || | |||||||||||| |||| ||| |||||     
T  21264884 gagtttgaggtggtttagagtttggctaggaaggaaagcttacgaggtaagggctttttccccatacgttcttactaagtgctagggctttgtgattaaa 21264785  T
Q  402 tagaagtagcaattcttgtcttttaaaaagaa 433  Q
     ||  ||||||||||||||||||| |||||||    
T  21264784 caggggtagcaattcttgtcttttgaaaagaa 21264753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 375 - 444
Target Start/End: Complemental strand, 36386929 - 36386859
Alignment:
Q  375 tactaagtgctagg-ctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaa 444  Q
    ||||||||| |||| |||||||||||| |||  ||||||||||||||||||||||||||||||||||||||    
T  36386929 tactaagtgttaggactgtgttattaaatagtggtagcaattcttgtcttttaaaaagaaaaataattaaa 36386859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 601 - 656
Target Start/End: Complemental strand, 9537335 - 9537278
Alignment:
Q  601 atgaattaaagaa--gagaaagatgaaaatgtgagtttgtgaaatgattgacttttgg 656  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||    
T  9537335 atgaattaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgatggacttttgg 9537278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 460 - 516
Target Start/End: Complemental strand, 36386820 - 36386764
Alignment:
Q  460 tattattaattatgagtgattattcttaattatgttttatatgaaagttgtgtatga 516  Q
    ||||||||| |||||||||||||||||||||||||||||||||| | || |||||||    
T  36386820 tattattaactatgagtgattattcttaattatgttttatatgatatttatgtatga 36386764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 478 - 590
Target Start/End: Complemental strand, 43407888 - 43407776
Alignment:
Q  478 attattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttgg 577  Q
    |||||| |||||||||||||||||||||||||||||||   ||||| |||||| || | | |||||||||| |  |||| ||||||| ||||||| | ||    
T  43407888 attatttttaattatgttttatatgaaagttgtgtatgtggatgtgatgtgaactggtttgttttatattattatgcttgatatgttcttgtgatgtagg 43407789  T
Q  578 aaaagaaatgtta 590  Q
     ||||| ||||||    
T  43407788 gaaagagatgtta 43407776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 176 - 260
Target Start/End: Complemental strand, 8311450 - 8311366
Alignment:
Q  176 cttcgttcaccgtccgattaagctaatttttggacagcgtgttcccaacatgcggttcttcgatttcaacggtctgatcgtcaaa 260  Q
    ||||||||||||| | ||  | |||||||||||| ||| |||||||| || | ||||||| | |||||||||||  |||||||||    
T  8311450 cttcgttcaccgttcaatcgaactaatttttggatagcatgttcccaccacgtggttctttgttttcaacggtccaatcgtcaaa 8311366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 451
Target Start/End: Complemental strand, 49170869 - 49170422
Alignment:
Q  19 aatcaagccactcctttcttctctttttaaaattcatggaagtctaaggtatactctatgtcctttttattttgtttacttccatacttcaatctctaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49170869 aatcaagccactcctttcttctctttttaaaattcatggaagtctaaggtatactctatgtcctttttattttgtttacttccatacttcaatctctaaa 49170770  T
Q  119 t--------------tcattgaagccattttcgttttcctcaaacatgtcatcgtagaattgcgactacgccttcgttcaccgtccgattaagctaattt 204  Q
    |              ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  49170769 tcctagaataatatctcattgaagccattttcgttttcctcaaacatgtcatcgtagaattgcgactacggcttcgttcaccgtccgattgagctaattt 49170670  T
Q  205 ttggacagcgtgttcccaacatgcggttcttcgatttcaacggtctgatcgtcaaactaactcttggagtgagagaaaccgtgtcttcaccgtagctgtg 304  Q
    ||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||| |||||||||||||| |||||||||||||||||||||    
T  49170669 ttggaaagcgtgttcccaacatgcggttcttcaatttcaacggtccgatcgtcaaactatctcctggagtgagagaaaacgtgtcttcaccgtagctgtg 49170570  T
Q  305 agtttgaggtggtttagagttcgactagaaagaaaagctctcgaggtaaaggcttttt-cccatatgtacatactaagtgctaggctgtgttattaagta 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| || ||||||||||| || ||||||||||||||||    
T  49170569 agtttgaggtggtttagagttcgactagaaagaaaagctctcgaggtaagggttttttccccatacgtccatactaagtgttacgctgtgttattaagta 49170470  T
Q  404 gaagtagcaattcttgtcttttaaaaagaaaaataattaaaacgtatt 451  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  49170469 gaagtagcaattcttgtcttttaaaaagaaaaataattaaaacctatt 49170422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 457 - 674
Target Start/End: Complemental strand, 49170391 - 49170174
Alignment:
Q  457 gagtattattaattatgagtgattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctt 556  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  49170391 gagtattattaattatgagtgattattcttaattatgttttatatgaaagttgtgtatgataatatggtgtgaattgatatattttatattaatgcgctt 49170292  T
Q  557 tatatgtttttgtgatcttggaaaagaaatgttacannnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgg 656  Q
    |||||||||||||||| |||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49170291 tatatgtttttgtgatgttggaaaagaaatgttacatttttttgatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgg 49170192  T
Q  657 gttgtgtgcttgatgatg 674  Q
     |||||||||||||||||    
T  49170191 tttgtgtgcttgatgatg 49170174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 121 - 451
Target Start/End: Complemental strand, 12197038 - 12196711
Alignment:
Q  121 cattgaagccattttcgttttcctcaaacatgtcatcgtagaattgcgactacgccttcgttcaccgtccgattaagctaatttttggacagcgtgttcc 220  Q
    |||| ||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||  ||||||| |||||| | | |||||     
T  12197038 cattaaagccattttcgttttcctaaaacctgtcatcgtagaattgcaactacgccttcgttcacggtccgatggagctaatatttggaaaacatgttct 12196939  T
Q  221 caacatgcggttcttcgatttcaacggtctgatcgtcaaactaactcttggagtgagagaaaccgtgtcttcaccgtagctgtgagtttgaggtggttta 320  Q
    || |||| |||| |||| ||||    || ||||||||||| ||| || |||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  12196938 cagcatgtggtttttcg-tttc----gtttgatcgtcaaaataattcctggagtgagagaaaacgtgtctgcaccgtagctgtgagtttgaggtggttta 12196844  T
Q  321 gagttcgactagaaagaaaagctctcgaggtaaaggcttttt-cccatatgtacatactaagtgctagg-ctgtgttattaagtagaagtagcaattctt 418  Q
    ||||||| |||| ||||||| ||  | |||||| |||||||| ||||||  | | |||||||||| ||| || ||||||||| |||  ||||||||||||    
T  12196843 gagttcggctaggaagaaaaacttacaaggtaagggctttttccccatacattcttactaagtgcaaggactatgttattaaatagtggtagcaattctt 12196744  T
Q  419 gtcttttaaaaagaaaaataattaaaacgtatt 451  Q
    ||||||||||||||||||||||||||| |||||    
T  12196743 gtcttttaaaaagaaaaataattaaaatgtatt 12196711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 460 - 674
Target Start/End: Complemental strand, 12911815 - 12911601
Alignment:
Q  460 tattattaattatgagtgattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttat 559  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| || ||||||||||||  |||||||    
T  12911815 tattattaattatgagtgattattcttaattatgttttatatgaaagttgtgtatgataatgtgatgcgaattgacattttttatattaatatgctttat 12911716  T
Q  560 atgtttttgtgatcttggaaaagaaatgttacannnnnnngatgaattaaag--aagagaaagatgaaaatgtgagtttgtgaaatgattgacttttggg 657  Q
     | ||||| | || |||||||||||||||||||       ||||||||||||  || ||||  ||||||||||||||||||||||||||||||||||||     
T  12911715 ttattttttttatgttggaaaagaaatgttaca--tttttgatgaattaaagaaaaaagaactatgaaaatgtgagtttgtgaaatgattgacttttggt 12911618  T
Q  658 ttgtgtgcttgatgatg 674  Q
    |||||| ||||||||||    
T  12911617 ttgtgtacttgatgatg 12911601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 334 - 451
Target Start/End: Complemental strand, 12911966 - 12911849
Alignment:
Q  334 aagaaaagctctcgaggtaaaggctttttcccatatgtacatactaagtgctaggctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaa 433  Q
    |||||||||||| ||||||| || ||||||||||| || |||||||||||||||| |||||||||||||| | ||||||||| |||||||||||||||||    
T  12911966 aagaaaagctcttgaggtaagggttttttcccatacgtccatactaagtgctaggttgtgttattaagtaaaggtagcaatttttgtcttttaaaaagaa 12911867  T
Q  434 aaataattaaaacgtatt 451  Q
    |||||||||||| |||||    
T  12911866 aaataattaaaatgtatt 12911849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 304 - 451
Target Start/End: Complemental strand, 10289474 - 10289325
Alignment:
Q  304 gagtttgaggtggtttagagttcgactagaaagaaaagctctcgaggtaaaggcttttt-cccatatgtacatactaagtgctagg-ctgtgttattaag 401  Q
    |||||||||||||||||||||| | |||| ||| ||||||  |||||||| |||||||| |||||| || |||||||||||||||| |||||| ||||||    
T  10289474 gagtttgaggtggtttagagtttggctaggaaggaaagcttacgaggtaagggctttttccccatacgtccatactaagtgctaggactgtgtcattaag 10289375  T
Q  402 tagaagtagcaattcttgtcttttaaaaagaaaaataattaaaacgtatt 451  Q
    ||   |||| ||| |||||||| |||||||||||| |||||||| |||||    
T  10289374 taatggtagtaatgcttgtcttctaaaaagaaaaacaattaaaatgtatt 10289325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 304 - 445
Target Start/End: Complemental strand, 48654522 - 48654379
Alignment:
Q  304 gagtttgaggtggtttagagttcgactagaaagaaaagctctcgaggtaaaggcttttt-cccatatgtacatactaagtgctaggctg-tgttattaag 401  Q
    |||||||||||||||||||||||| |||| || ||||||| ||||||||| || ||||| |||||| || |||||||||| ||||| || |||| | ||     
T  48654522 gagtttgaggtggtttagagttcggctaggaacaaaagctttcgaggtaagggttttttccccatacgtccatactaagtactaggatgatgttgtgaat 48654423  T
Q  402 tagaagtagcaattcttgtcttttaaaaagaaaaataattaaaa 445  Q
    ||||||||  ||||||||||||||  ||||||||| || |||||    
T  48654422 tagaagtacaaattcttgtcttttggaaagaaaaacaactaaaa 48654379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 563 - 674
Target Start/End: Original strand, 22077858 - 22077970
Alignment:
Q  563 tttttgtgatcttggaaaagaaatgttacannnnnnngatgaattaaagaa--gagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttg 660  Q
    |||||||| | ||||||||||| |||||||        |||||||||||||  ||||||||||||||||||||||||||||||||| ||||||| |||||    
T  22077858 tttttgtggtgttggaaaagaagtgttacattttttttatgaattaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgatggactttt-ggttg 22077956  T
Q  661 tgtgcttgatgatg 674  Q
    |||| |||||||||    
T  22077957 tgtgtttgatgatg 22077970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 478 - 590
Target Start/End: Complemental strand, 10289312 - 10289200
Alignment:
Q  478 attattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttgg 577  Q
    |||||| |||||||||||||||||||||||||||||||   ||||| |||||| || | | |||||||||| |  |||| ||||||| ||||||| | ||    
T  10289312 attatttttaattatgttttatatgaaagttgtgtatgtggatgtgatgtgaactggtttgttttatattattatgcttgatatgttcttgtgatgtagg 10289213  T
Q  578 aaaagaaatgtta 590  Q
     ||||| ||||||    
T  10289212 gaaagagatgtta 10289200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 358 - 445
Target Start/End: Original strand, 22077644 - 22077732
Alignment:
Q  358 tttttcccatatgtacatactaagtgctaggctg-tgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaa 445  Q
    |||||||||||||| |||||||||| ||||| || |||||| || |||| ||||  |||||||||| |||| |||||||| || |||||    
T  22077644 tttttcccatatgttcatactaagtactaggatgatgttatgaattagaggtagagattcttgtctgttaagaagaaaaacaactaaaa 22077732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 181; Significance: 2e-97; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 457 - 674
Target Start/End: Original strand, 55162272 - 55162489
Alignment:
Q  457 gagtattattaattatgagtgattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctt 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  55162272 gagtattattaattatgagtgattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattagtatattttatattaatgcgctt 55162371  T
Q  557 tatatgtttttgtgatcttggaaaagaaatgttacannnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgg 656  Q
    |||||||||||||||| |||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55162372 tatatgtttttgtgatgttggaaaagaaatgttacatttttttgatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgg 55162471  T
Q  657 gttgtgtgcttgatgatg 674  Q
     |||||||||||||||||    
T  55162472 tttgtgtgcttgatgatg 55162489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 460 - 674
Target Start/End: Original strand, 40459044 - 40459254
Alignment:
Q  460 tattattaattatgagtgattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttat 559  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||    
T  40459044 tattattaattatgagtgattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttat 40459143  T
Q  560 atgtttttgtgatcttggaaaagaaatgttaca-nnnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggt 658  Q
    ||| ||||||||| |||||||||||||||||||        | |||||||||||||||||||||    || ||||||||||||||||||||||||||| |    
T  40459144 atg-ttttgtgatgttggaaaagaaatgttacattttctttggtgaattaaagaagagaaagat----atatgagtttgtgaaatgattgacttttggtt 40459238  T
Q  659 tgtgtgcttgatgatg 674  Q
    ||||||||||||||||    
T  40459239 tgtgtgcttgatgatg 40459254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 327 - 451
Target Start/End: Original strand, 40458885 - 40459010
Alignment:
Q  327 gactagaaagaaaagctctcgaggtaaaggctttttccc-atatgtacatactaagtgctaggctgtgttattaagtagaagtagcaattcttgtctttt 425  Q
    |||||| |||||||||||||||||||| ||||||||||| ||| || ||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  40458885 gactaggaagaaaagctctcgaggtaagggctttttccccatacgtccatactaagtgctagactgtgttattaagtagaggtagcaattcttgtctttt 40458984  T
Q  426 aaaaagaaaaataattaaaacgtatt 451  Q
    ||||||||||||||||||||||||||    
T  40458985 aaaaagaaaaataattaaaacgtatt 40459010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 341 - 451
Target Start/End: Original strand, 55162130 - 55162241
Alignment:
Q  341 gctctcgaggtaaaggctttttcc-catatgtacatactaagtgctaggctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataa 439  Q
    ||||| ||||||| |  ||||||| |||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55162130 gctcttgaggtaaggtttttttcctcatacgtccatactaagtgctagactgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataa 55162229  T
Q  440 ttaaaacgtatt 451  Q
    ||||||||||||    
T  55162230 ttaaaacgtatt 55162241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 346 - 445
Target Start/End: Original strand, 69249 - 69349
Alignment:
Q  346 cgaggtaaaggctttttcccatatgtacatactaagtgctagg-ctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaa 444  Q
    |||||||| || ||||||||||| || ||||||||||| |||| |||||||||||| |||  |||||||||||||||| || |||||||||| |||||||    
T  69249 cgaggtaagggttttttcccatacgtccatactaagtgttaggactgtgttattaaatagtggtagcaattcttgtctcttgaaaagaaaaacaattaaa 69348  T
Q  445 a 445  Q
    |    
T  69349 a 69349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 601 - 674
Target Start/End: Complemental strand, 28969167 - 28969093
Alignment:
Q  601 atgaattaaagaa--gagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgatgatg 674  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||    
T  28969167 atgaattaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgattgactttt-ggttgtgtgtttcatgatg 28969093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 474 - 544
Target Start/End: Original strand, 41868770 - 41868840
Alignment:
Q  474 agtgattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttat 544  Q
    |||||||||  ||| |||||||||||||||  ||||| ||||| |||||| |||| | |||||||||||||    
T  41868770 agtgattatctttatttatgttttatatgatggttgtatatgagaatgtgatgtggaatgatatattttat 41868840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 6e-82; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 472 - 674
Target Start/End: Original strand, 40691007 - 40691210
Alignment:
Q  472 tgagtgattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtga 571  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40691007 tgagtgattattcttaattatgttttagatgaaagttgtgtatgataatgtggtgtgaattgatatattttatatcaatgcgctttatatgtttttgtga 40691106  T
Q  572 tcttggaaaagaaatgttaca-nnnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgat 670  Q
    | |||||||||||||||||||        |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40691107 tgttggaaaagaaatgttacattttttttgatgaattaaagaagaaaaagatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtgcttgat 40691206  T
Q  671 gatg 674  Q
    ||||    
T  40691207 gatg 40691210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 463 - 670
Target Start/End: Original strand, 30909884 - 30910093
Alignment:
Q  463 tattaattatgagtgattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatg 562  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || || |||||||||||||||||| |  ||||||||||    
T  30909884 tattaattatgagtgattattcttaattatgttttatatgaaagttgtgtacgataatgtgatgcgagttgatatattttatattattatgctttatatg 30909983  T
Q  563 tttttgtgatcttggaaaagaaatgttacannnnnnngatgaattaaag----aagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggt 658  Q
    ||||| | || ||||||||| |||||||||       || |||||||||    || |||| |||||||||||| ||||||||||||||||| |||||| |    
T  30909984 ttttttttatgttggaaaagtaatgttaca--tttttgacgaattaaagaaaaaaaagaacgatgaaaatgtgtgtttgtgaaatgattgaattttggtt 30910081  T
Q  659 tgtgtgcttgat 670  Q
    ||||| ||||||    
T  30910082 tgtgtacttgat 30910093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 358 - 451
Target Start/End: Original strand, 40687556 - 40687649
Alignment:
Q  358 tttttcccatatgtacatactaagtgctaggctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaacgtatt 451  Q
    ||||||||||| || ||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40687556 tttttcccatacgtccatactaagtgttaggttgtgttagtaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaacgtatt 40687649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 373 - 449
Target Start/End: Original strand, 30909772 - 30909845
Alignment:
Q  373 catactaagtgctaggctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaacgta 449  Q
    |||||||||||||||| |||||||   |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30909772 catactaagtgctaggttgtgtta---agtagaggtagcaattcttgtcttttaaaaagaaaaataattaaaacgta 30909845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 358 - 445
Target Start/End: Original strand, 38000856 - 38000944
Alignment:
Q  358 tttttcccatatgtacatactaagtgctag-gctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaa 445  Q
    |||| |||||| || ||||||||||||||| ||||||||||||| ||   |||||||||||||||||||||||||| | ||||||||||    
T  38000856 ttttccccatacgtccatactaagtgctagagctgtgttattaaataatggtagcaattcttgtcttttaaaaagacagataattaaaa 38000944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 389 - 445
Target Start/End: Original strand, 6308666 - 6308722
Alignment:
Q  389 ctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaa 445  Q
    |||||||||||| |||  |||||||||||||||| || |||||||||||||||||||    
T  6308666 ctgtgttattaaatagtggtagcaattcttgtctcttgaaaagaaaaataattaaaa 6308722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 520 - 590
Target Start/End: Original strand, 38001023 - 38001093
Alignment:
Q  520 tgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaaagaaatgtta 590  Q
    |||| |||||| |||||||||||||  || |  |||||||||||||||||||| |||||||||| ||||||    
T  38001023 tgtgatgtgaaatgatatattttatgctattatgctttatatgtttttgtgatgttggaaaagagatgtta 38001093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 375 - 443
Target Start/End: Original strand, 27026649 - 27026718
Alignment:
Q  375 tactaagtgctaggct-gtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaa 443  Q
    |||||||||||||| | |||||||||| |||  ||| ||||||||||||||| |||||||||| ||||||    
T  27026649 tactaagtgctaggattgtgttattaaatagtggtaacaattcttgtcttttgaaaagaaaaacaattaa 27026718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 2e-72; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 460 - 674
Target Start/End: Complemental strand, 36732280 - 36732063
Alignment:
Q  460 tattattaattatgagtgattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttat 559  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |  |||||||    
T  36732280 tattattaattatgagtgattattcttaattatgtttgatataaaagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttat 36732181  T
Q  560 atgtttttgtgatcttggaaaagaaatgttaca---nnnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgg 656  Q
    |||||||||||||  |||||||||||||| |||          |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36732180 atgtttttgtgatgctggaaaagaaatgtcacatttgttttttgatgaattaaggaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgg 36732081  T
Q  657 gttgtgtgcttgatgatg 674  Q
     |||||||| ||||||||    
T  36732080 tttgtgtgcgtgatgatg 36732063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 460 - 674
Target Start/End: Original strand, 40447571 - 40447784
Alignment:
Q  460 tattattaattatgagtgattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttat 559  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |  |||||||    
T  40447571 tattattaattatgagtgattattcttaattatgttttatatgaaagtagtgtatgataatgtggtgtggattgatatattttatattattatgctttat 40447670  T
Q  560 atgtttttgtgatcttggaaaagaaatgttacannnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggtt 659  Q
    ||| |||||||   ||||||||| |||||||||       ||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| ||    
T  40447671 atg-ttttgtggcgttggaaaagtaatgttacattttcttgatgatttaaagaagaaaaagatgataatgtgagtttgtgaaatgattgacttttggttt 40447769  T
Q  660 gtgtgcttgatgatg 674  Q
    |||| ||||||||||    
T  40447770 gtgtacttgatgatg 40447784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 348 - 674
Target Start/End: Complemental strand, 40729628 - 40729298
Alignment:
Q  348 aggtaaaggctttttcccatatgtacatactaagtgctaggctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaacg 447  Q
    |||||| | |||||| | ||| || ||||||| ||||| || ||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  40729628 aggtaaggacttttttctatacgtccatactaggtgctgggttgtattattaagtagaggtagcaattcttgtcttttaaaaagaaaaatgattaaaacg 40729529  T
Q  448 tattaagtagagtattattaat------tatgagtgattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattt 541  Q
    ||||     | |||  ||||||      ||  |||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  40729528 tattttcatg-gtaaaattaatcctttctaaaagtgtttattcttaattatgttttatatggaaattgtgtatgataatgtggtgtgaattgatatattt 40729430  T
Q  542 tatattaatgcgctttatatgtttttgtgatcttggaaaagaaatgttacannnnnnngatgaattaaagaagagaaagatgaaaatgtgagtttgtgaa 641  Q
    ||||||| |  |||||||||||||||||||| |||||||||||||| || |        |||||||||| || ||||||||||| |||||| ||||||||    
T  40729429 tatattattatgctttatatgtttttgtgatgttggaaaagaaatgctatattttttttatgaattaaataatagaaagatgaacatgtgaatttgtgaa 40729330  T
Q  642 atgattgacttttgggttgtgtgcttgatgatg 674  Q
    ||| | ||||||| ||||||||| |||||||||    
T  40729329 atggtggactttt-ggttgtgtgtttgatgatg 40729298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 460 - 674
Target Start/End: Complemental strand, 18292830 - 18292613
Alignment:
Q  460 tattattaattatgagtgattattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttat 559  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |  |||||||    
T  18292830 tattattaattatgagtgattattcttaattatgttttatatgaaagttgtgtgtgataatgtagtgtgaattgatatattttatattattatgctttat 18292731  T
Q  560 atgtttttgtgatcttggaaaagaaatgttaca--nnnnnnngatgaattaaag--aagagaaagatgaaaatgtgagtttgtgaaatgattgacttttg 655  Q
    || |||||||||| |||||||||||||||||||          |||||| ||||  |||||||||||||||||||||||||||||||||||||||  ||     
T  18292730 atatttttgtgatgttggaaaagaaatgttacattttttttttatgaataaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgattgacggtt- 18292632  T
Q  656 ggttgtgtgcttgatgatg 674  Q
    ||||||||| |||||||||    
T  18292631 ggttgtgtgtttgatgatg 18292613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 160 - 358
Target Start/End: Original strand, 22403559 - 22403757
Alignment:
Q  160 agaattgcgactacgccttcgttcaccgtccgattaagctaatttttggacagcgtgttcccaacatgcggttcttcgatttcaacggtctgatcgtcaa 259  Q
    ||||||| | ||||||||||||||||||| | ||| ||||||||||||| |||| ||||  |||||||| |||||||  ||||||||| |||||||||||    
T  22403559 agaattgtgtctacgccttcgttcaccgttcaattgagctaatttttgggcagcatgtttgcaacatgcagttcttcattttcaacggcctgatcgtcaa 22403658  T
Q  260 actaactcttggagtgagagaaaccgtgtcttcaccgtagctgtgagtttgaggtggtttagagttcgactagaaagaaaagctctcgaggtaaaggct 358  Q
    | |||    ||||| |||||||| ||||||| |||||||||||||||||| ||||||||||||||||| |||| |||||||| ||||||||||| ||||    
T  22403659 attaatgactggagcgagagaaatcgtgtctgcaccgtagctgtgagtttaaggtggtttagagttcggctaggaagaaaagatctcgaggtaagggct 22403757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 266 - 383
Target Start/End: Complemental strand, 41340974 - 41340857
Alignment:
Q  266 tcttggagtgagagaaaccgtgtcttcaccgtagctgtgagtttgaggtggtttagagttcgactagaaagaaaagctctcgaggtaaaggctttttccc 365  Q
    ||||||||||||||||| |||||||| ||||||| |||||||||||||| |||||||||||| |||| ||||||||||||| |||||| |||||||||||    
T  41340974 tcttggagtgagagaaaacgtgtcttaaccgtagttgtgagtttgaggttgtttagagttcgcctaggaagaaaagctctctaggtaagggctttttccc 41340875  T
Q  366 atatgtacatactaagtg 383  Q
    ||| || |||||||||||    
T  41340874 atacgtccatactaagtg 41340857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 358 - 451
Target Start/End: Complemental strand, 18292957 - 18292864
Alignment:
Q  358 tttttcccatatgtacatactaagtgctaggctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaacgtatt 451  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||    
T  18292957 tttttcccatacgtccatactaagtgctaggctgtgttattaagtagaggtagcaattcttgtcttttaaaaagaaaaatagttaaaatgtatt 18292864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 36732812 - 36732736
Alignment:
Q  20 atcaagccactcctttcttctctttttaaaattcatggaagtctaaggtatactctatgtcctttttattttgttta 96  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36732812 atcaagccactcatttcttctctttttaaaattcatggaagtctaaggtatactctatgtcctttttatttttttta 36732736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 346 - 451
Target Start/End: Original strand, 40447431 - 40447537
Alignment:
Q  346 cgaggtaaaggctttttccc-atatgtacatactaagtgctaggctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaa 444  Q
    |||||||| ||||||||||| ||| || ||||||||||||||| || |||||||||||||| |||| |||||||||||| |||||||||||||| |||||    
T  40447431 cgaggtaagggctttttccccatacgtccatactaagtgctagactatgttattaagtagaggtagtaattcttgtcttctaaaaagaaaaatagttaaa 40447530  T
Q  445 acgtatt 451  Q
    |||||||    
T  40447531 acgtatt 40447537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 304 - 433
Target Start/End: Complemental strand, 32735586 - 32735455
Alignment:
Q  304 gagtttgaggtggtttagagttcgactagaaagaaaagctctcgaggtaaaggcttttt-cccatatgtacatactaagtgctagg-ctgtgttattaag 401  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| |||||| || | ||||||||||||||  | |||||| ||     
T  32735586 gagtttgaggtggtttagagttcggctaggaagaaaagctctcgaggtaagggctttttccccatacgttcttactaagtgctaggattatgttatgaat 32735487  T
Q  402 tagaagtagcaattcttgtcttttaaaaagaa 433  Q
    |||| ||||  |||||||||| || |||||||    
T  32735486 tagaggtagagattcttgtctgttgaaaagaa 32735455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 358 - 451
Target Start/End: Complemental strand, 36732552 - 36732462
Alignment:
Q  358 tttttcccatatgtacatactaagtgctaggctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaacgtatt 451  Q
    ||||||||| | || |||||||||||||||||    ||||||||| || ||| |||||||||||||||||||||||||||||||||||| ||||    
T  36732552 tttttcccacacgttcatactaagtgctaggca---ttattaagttgaggtaacaattcttgtcttttaaaaagaaaaataattaaaacatatt 36732462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 197 - 316
Target Start/End: Complemental strand, 36732683 - 36732564
Alignment:
Q  197 gctaatttttggacagcgtgttcccaacatgcggttcttcgatttcaacggtctgatcgtcaaactaactcttggagtgagagaaaccgtgtcttcaccg 296  Q
    |||||||||||| |||| |||||    |||| ||||||||| ||||||||||| |||||||||| ||| || ||||||||||||||  |||||| ||| |    
T  36732683 gctaatttttgggcagcatgttcttcgcatgtggttcttcgttttcaacggtccgatcgtcaaaataattcctggagtgagagaaaatgtgtctgcacag 36732584  T
Q  297 tagctgtgagtttgaggtgg 316  Q
    ||| | ||||||||||||||    
T  36732583 tagttatgagtttgaggtgg 36732564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 478 - 590
Target Start/End: Complemental strand, 41340792 - 41340680
Alignment:
Q  478 attattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttgg 577  Q
    |||||||||| |||||||||||||||||||||||||||   ||||| |||||| || ||| |||||||||| |  |||| ||||||| ||||||| | ||    
T  41340792 attattcttacttatgttttatatgaaagttgtgtatgtggatgtgatgtgaactggtatgttttatattattatgcttgatatgttcttgtgatgtagg 41340693  T
Q  578 aaaagaaatgtta 590  Q
     ||||| ||||||    
T  41340692 gaaagagatgtta 41340680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 460 - 505
Target Start/End: Complemental strand, 36732366 - 36732321
Alignment:
Q  460 tattattaattatgagtgattattcttaattatgttttatatgaaa 505  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  36732366 tattattaattatgagtgattattcttaattatgtttgatatgaaa 36732321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 345 - 433
Target Start/End: Original strand, 1193596 - 1193685
Alignment:
Q  345 tcgaggtaaaggctttttcccatatgtacatactaagtgctag-gctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaa 433  Q
    ||||||||| |||||||||||||| || | |||||||||||||  || |||||||||  ||  ||||||||||||||||||| |||||||    
T  1193596 tcgaggtaagggctttttcccataagttcttactaagtgctagtactttgttattaaacaggggtagcaattcttgtcttttgaaaagaa 1193685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 41341052 - 41341000
Alignment:
Q  130 cattttcgttttcctcaaacatgtcatcgtagaattgcgactacgccttcgtt 182  Q
    ||||||||||||||||||||  |||| ||||||| ||||||||||||||||||    
T  41341052 cattttcgttttcctcaaaccagtcagcgtagaactgcgactacgccttcgtt 41341000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 359 - 445
Target Start/End: Original strand, 44788527 - 44788614
Alignment:
Q  359 ttttcccatatgtacatactaagtgctagg-ctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaa 445  Q
    |||||||||| || | ||||||||| |||| |||||||||||| |||  |||| |||| ||||||||| |||||||||| ||||||||    
T  44788527 ttttcccatacgttcttactaagtgttaggactgtgttattaaatagtggtagtaattattgtcttttgaaaagaaaaacaattaaaa 44788614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 445
Target Start/End: Original strand, 29270661 - 29270734
Alignment:
Q  373 catactaagtgctaggct-gtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaa 445  Q
    ||||||||||| |||| | ||| |||||| |||  ||||||||||||||||||| |||||||||| ||||||||    
T  29270661 catactaagtgttagggttgtgctattaaatagtggtagcaattcttgtcttttgaaaagaaaaacaattaaaa 29270734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 348 - 445
Target Start/End: Complemental strand, 28267793 - 28267695
Alignment:
Q  348 aggtaaaggctttttcccatatgtacatactaagtgctaggctg-tgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaa 445  Q
    |||||| || ||||||||||| || |||||||||| ||||| || |||| | || ||||||||  ||||||| |||||| |||||||||| || |||||    
T  28267793 aggtaagggttttttcccatacgtccatactaagtactaggatgatgttgtgaattagaagtacaaattcttatcttttgaaaagaaaaacaactaaaa 28267695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 413 - 451
Target Start/End: Complemental strand, 36732437 - 36732400
Alignment:
Q  413 attcttgtcttttaaaaagaaaaataattaaaacgtatt 451  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  36732437 attcttgtcttttaaaaag-aaaataattaaaacgtatt 36732400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 8e-29; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 11968333 - 11968236
Alignment:
Q  130 cattttcgttttcctcaaacatgtcatcgtagaattgcgactacgccttcgttcaccgtccgattaagctaatttttggacagcgtgttcccaacatg 227  Q
    |||||| |||||| |||||| |||||||||||||||||||||||| |||||||||| ||| |||| |||||||| |||||||||||||||||||||||    
T  11968333 catttttgttttcttcaaacctgtcatcgtagaattgcgactacggcttcgttcactgtctgattgagctaattattggacagcgtgttcccaacatg 11968236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 304 - 451
Target Start/End: Complemental strand, 7337377 - 7337228
Alignment:
Q  304 gagtttgaggtggtttagagttcgactagaaagaaaagctctcgaggtaaaggcttttt-cccatatgtacatactaagtgctagg-ctgtgttattaag 401  Q
    |||||||||||||||||||||| | |||| ||| ||||||  |||||||| |||||||| |||||| || |||||||||||||||| |||||| ||||||    
T  7337377 gagtttgaggtggtttagagtttggctaggaaggaaagcttacgaggtaagggctttttccccatacgtccatactaagtgctaggactgtgtcattaag 7337278  T
Q  402 tagaagtagcaattcttgtcttttaaaaagaaaaataattaaaacgtatt 451  Q
    ||   |||| ||| |||||||| |||||||||||| |||||||| |||||    
T  7337277 taatggtagaaatgcttgtcttctaaaaagaaaaacaattaaaatgtatt 7337228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 297 - 388
Target Start/End: Complemental strand, 11968180 - 11968089
Alignment:
Q  297 tagctgtgagtttgaggtggtttagagttcgactagaaagaaaagctctcgaggtaaaggctttttcccatatgtacatactaagtgctagg 388  Q
    ||||||||||||||||||||||||||||| | |||| |||||||| ||||||||||| || ||||||||||| || |||||||||| |||||    
T  11968180 tagctgtgagtttgaggtggtttagagtttggctaggaagaaaagttctcgaggtaagggttttttcccatacgtccatactaagtactagg 11968089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 345 - 451
Target Start/End: Complemental strand, 43278488 - 43278381
Alignment:
Q  345 tcgaggtaaaggctttttcccatatgtacatactaagtgctagg-ctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaa 443  Q
    ||||||||| ||||||||| |||| || |||| |||||| |||| |||||| ||||| |||  |||||||| |||||||| |||||||||||||||||||    
T  43278488 tcgaggtaagggctttttctcatacgtccatattaagtgttagggctgtgtcattaaatagtggtagcaatgcttgtcttataaaaagaaaaataattaa 43278389  T
Q  444 aacgtatt 451  Q
    || |||||    
T  43278388 aatgtatt 43278381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 478 - 590
Target Start/End: Complemental strand, 7337215 - 7337103
Alignment:
Q  478 attattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttgg 577  Q
    |||||| |||||||||||||||||||||||||||||||   ||||| |||||| || | | |||||||||| |  |||| ||||||| ||||||| | ||    
T  7337215 attatttttaattatgttttatatgaaagttgtgtatgtggatgtgatgtgaactggtttgttttatattattatgcttgatatgttcttgtgatgtagg 7337116  T
Q  578 aaaagaaatgtta 590  Q
     ||||| ||||||    
T  7337115 gaaagagatgtta 7337103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 478 - 590
Target Start/End: Complemental strand, 43278368 - 43278256
Alignment:
Q  478 attattcttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttgg 577  Q
    |||||||||||||||||||||| |||||||||||||||   ||||| |||||| || | | |||||||||| |  |||| ||||||| ||||||| | ||    
T  43278368 attattcttaattatgttttatgtgaaagttgtgtatgtggatgtgatgtgaactggtttgttttatattattatgcttgatatgttcttgtgatgtagg 43278269  T
Q  578 aaaagaaatgtta 590  Q
     ||||| ||||||    
T  43278268 gaaagagatgtta 43278256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 231 - 314
Target Start/End: Original strand, 16975129 - 16975212
Alignment:
Q  231 ttcttcgatttcaacggtctgatcgtcaaactaactcttggagtgagagaaaccgtgtcttcaccgtagctgtgagtttgaggt 314  Q
    ||||||| |||||||||||  ||||||||| ||| || |||||||| |||||  ||||||  ||||||||||||||||||||||    
T  16975129 ttcttcgttttcaacggtccaatcgtcaaaataattcctggagtgacagaaaatgtgtctgtaccgtagctgtgagtttgaggt 16975212  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 8730831 - 8730895
Alignment:
Q  377 ctaagtgctagg-ctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataat 440  Q
    |||||||||||| || ||||||||| ||| ||| | |||||||||||||||||||||||||||||    
T  8730831 ctaagtgctagggctatgttattaaatagtagtggtaattcttgtcttttaaaaagaaaaataat 8730895  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 9082718 - 9082782
Alignment:
Q  377 ctaagtgctagg-ctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataat 440  Q
    |||||||||||| || ||||||||| ||| ||| | |||||||||||||||||||||||||||||    
T  9082718 ctaagtgctagggctatgttattaaatagtagtggtaattcttgtcttttaaaaagaaaaataat 9082782  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 445
Target Start/End: Original strand, 9104202 - 9104273
Alignment:
Q  375 tactaagtgctagg-ctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaa 445  Q
    ||||||||| |||| |||||||||||| |||  ||||||||||||||||||| |||||||||| ||| ||||    
T  9104202 tactaagtgttaggactgtgttattaaatagtggtagcaattcttgtcttttgaaaagaaaaacaataaaaa 9104273  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 348 - 445
Target Start/End: Complemental strand, 17542914 - 17542816
Alignment:
Q  348 aggtaaaggctttttcccatatgtacatactaagtgctagg-ctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaa 445  Q
    |||||| | ||||| |||||| || | ||||||||  |||| |||||||||||| |||  |||||||||||||||| || |||||||||| ||||||||    
T  17542914 aggtaaggccttttccccatacgttcttactaagttttaggactgtgttattaaatagtggtagcaattcttgtctcttgaaaagaaaaacaattaaaa 17542816  T

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Target: scaffold0041 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 601 - 670
Target Start/End: Complemental strand, 33259 - 33190
Alignment:
Q  601 atgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttgggttgtgtgcttgat 670  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||    
T  33259 atgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttggttcgtgtacttgat 33190  T

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Target: scaffold0041; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 527 - 592
Target Start/End: Complemental strand, 33349 - 33284
Alignment:
Q  527 tgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaaagaaatgttaca 592  Q
    |||||||||||||||||| ||| |  | |||||||||||||||||| | |||||||||||||||||    
T  33349 tgaattgatatattttatcttattatgttttatatgtttttgtgatgtaggaaaagaaatgttaca 33284  T

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Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 271 - 365
Target Start/End: Original strand, 35839024 - 35839118
Alignment:
Q  271 gagtgagagaaaccgtgtcttcaccgtagctgtgagtttgaggtggtttagagttcgactagaaagaaaagctctcgaggtaaaggctttttccc 365  Q
    |||||||||||| ||||||| |||| ||| ||||| ||||||||||||||||||| |||||| |||||||||||||||| |||  ||||||||||    
T  35839024 gagtgagagaaaacgtgtctgcaccatagttgtgactttgaggtggtttagagtttgactaggaagaaaagctctcgagctaagagctttttccc 35839118  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 338 - 451
Target Start/End: Original strand, 44436055 - 44436168
Alignment:
Q  338 aaagctctcgaggtaaaggctttttcccatatgtacatactaagtgcta-ggctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaa 436  Q
    |||||| | ||||||| |||||||||| ||| ||  ||||||||||||| || ||||||||||| |||  ||||||||||||||||||||||||||||||    
T  44436055 aaagcttttgaggtaagggctttttcc-atacgtcaatactaagtgctaaggatgtgttattaaatagtggtagcaattcttgtcttttaaaaagaaaaa 44436153  T
Q  437 taattaaaacgtatt 451  Q
    ||||||||| |||||    
T  44436154 taattaaaatgtatt 44436168  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 48 - 260
Target Start/End: Original strand, 24422915 - 24423140
Alignment:
Q  48 aaattcatggaagtctaaggtatactctatgtcctttttattttgtttacttccatacttcaatctctaa----------at---tcattgaagccattt 134  Q
    |||||| ||| |||||||||||||||||||||||||| ||| ||| ||||| ||||| | ||||||||||          ||   |||||| ||| ||||    
T  24422915 aaattcttgggagtctaaggtatactctatgtcctttctatcttgcttactcccatattccaatctctaatcctagaataatgtctcattggagctattt 24423014  T
Q  135 tcgttttcctcaaacatgtcatcgtagaattgcgactacgccttcgttcaccgtccgattaagctaatttttggacagcgtgttcccaacatgcggttct 234  Q
    ||||||||   || ||||||| |||||||||| |||||| |||| ||||||| | |||||  ||||||||||| ||||| |||| ||| |||  ||||||    
T  24423015 tcgttttctctaaccatgtcaccgtagaattgggactacacctttgttcaccattcgattgcgctaatttttgaacagcatgtttccaccatttggttct 24423114  T
Q  235 tcgatttcaacggtctgatcgtcaaa 260  Q
    ||| |||||| |||| ||||||||||    
T  24423115 tcgttttcaaaggtccgatcgtcaaa 24423140  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 350 - 445
Target Start/End: Complemental strand, 40841652 - 40841556
Alignment:
Q  350 gtaaaggctttttcccatatgtacatactaagtgctagg-ctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaa 445  Q
    |||| |||||||||||||| || | ||||||||| |||| |||||||||||| |||  ||||||||||||||||||| |||||||||| ||| ||||    
T  40841652 gtaagggctttttcccatacgttcttactaagtgttaggactgtgttattaaatagtggtagcaattcttgtcttttgaaaagaaaaacaataaaaa 40841556  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 329 - 445
Target Start/End: Complemental strand, 22816608 - 22816490
Alignment:
Q  329 ctagaaagaaaagctctcgaggtaaaggctttttccc-atatgtacatactaagtgctagg-ctgtgttattaagtagaagtagcaattcttgtctttta 426  Q
    |||| ||| |||||||||||||||| ||||||||||| ||| || | | ||||||| |||| |||||||||||| |||  || ||||||||||||| ||     
T  22816608 ctaggaaggaaagctctcgaggtaagggctttttccccatacgttcttgctaagtgttaggactgtgttattaaatagtggttgcaattcttgtctcttg 22816509  T
Q  427 aaaagaaaaataattaaaa 445  Q
    |||||||||| ||||||||    
T  22816508 aaaagaaaaacaattaaaa 22816490  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 348 - 445
Target Start/End: Complemental strand, 41958584 - 41958486
Alignment:
Q  348 aggtaaaggctttttcccatatgtacatactaagtgctag-gctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaa 445  Q
    |||||| ||||||||||||||  | |||| |||||||||| ||||||||||||| |||  || ||||||||||||||||||||||  | ||||||||||    
T  41958584 aggtaagggctttttcccatacatccatattaagtgctagagctgtgttattaaatagtggtggcaattcttgtcttttaaaaaggcagataattaaaa 41958486  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 590
Target Start/End: Complemental strand, 41958442 - 41958337
Alignment:
Q  485 ttaattatgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatcttggaaaagaa 584  Q
    ||||||||||| || |||| | || || |||| | |||| |||||| | |||||||||||  || |  |||||||||||||||||||| ||||||||||     
T  41958442 ttaattatgttctagatgatatttatgaatgagagtgtgatgtgaaataatatattttatgctattatgctttatatgtttttgtgatgttggaaaagag 41958343  T
Q  585 atgtta 590  Q
    ||||||    
T  41958342 atgtta 41958337  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 615 - 655
Target Start/End: Original strand, 44436323 - 44436363
Alignment:
Q  615 agaaagatgaaaatgtgagtttgtgaaatgattgacttttg 655  Q
    ||||||||||||| ||||| |||||||||||||||||||||    
T  44436323 agaaagatgaaaacgtgagattgtgaaatgattgacttttg 44436363  T

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Target: scaffold0413 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 269 - 433
Target Start/End: Original strand, 8759 - 8927
Alignment:
Q  269 tggagtgagagaaaccgtgtcttcaccgtagc--tgtgagtttgaggtggtttagagttcgactagaaagaaaagctctcgaggtaaaggcttttt-ccc 365  Q
    |||||| || |||| ||||||| ||| |||||  ||||| |||||| |||||||||||| | |||| |||||||||||||||||||| |||||||| |||    
T  8759 tggagttagtgaaaacgtgtctgcacagtagcgctgtgactttgagttggtttagagtttggctaggaagaaaagctctcgaggtaagggctttttcccc 8858  T
Q  366 atatgtacatactaagtgctagg-ctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaa 433  Q
    ||| || | |||||||| |||||  | |||||| || |||| |||  ||||||||||| || |||||||    
T  8859 atacgttcttactaagtactaggattatgttatgaattagaggtataaattcttgtctgttgaaaagaa 8927  T

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Target: scaffold0413; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 194
Target Start/End: Original strand, 8716 - 8745
Alignment:
Q  165 tgcgactacgccttcgttcaccgtccgatt 194  Q
    ||||||||||||||||||||||||||||||    
T  8716 tgcgactacgccttcgttcaccgtccgatt 8745  T

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Target: scaffold1838 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 600 - 656
Target Start/End: Original strand, 444 - 502
Alignment:
Q  600 gatgaattaaagaa--gagaaagatgaaaatgtgagtttgtgaaatgattgacttttgg 656  Q
    ||||||||||||||  ||||||| |||||||||||||||||||||||||  ||||||||    
T  444 gatgaattaaagaaaagagaaagttgaaaatgtgagtttgtgaaatgatgaacttttgg 502  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 251 - 365
Target Start/End: Complemental strand, 10751772 - 10751658
Alignment:
Q  251 gatcgtcaaactaactcttggagtgagagaaaccgtgtcttcaccgtagctgtgagtttgaggtggtttagagttcgactagaaagaaaagctctcgagg 350  Q
    |||||||||| ||| || |||||||| ||||| ||||| |  || ||||||||||||||||||| |||||| ||| | |||| ||  ||||||  |||||    
T  10751772 gatcgtcaaaataattcctggagtgacagaaaacgtgtttgaacagtagctgtgagtttgaggtagtttagtgtttggctaggaatgaaagcttacgagg 10751673  T
Q  351 taaaggctttttccc 365  Q
    ||| ||| |||||||    
T  10751672 taagggccttttccc 10751658  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 365
Target Start/End: Complemental strand, 13777393 - 13777332
Alignment:
Q  304 gagtttgaggtggtttagagttcgactagaaagaaaagctctcgaggtaaaggctttttccc 365  Q
    |||||||||||||||||||||| | |||| ||| ||||||  |||||||| | |||||||||    
T  13777393 gagtttgaggtggtttagagtttggctaggaaggaaagcttacgaggtaaggactttttccc 13777332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 445
Target Start/End: Original strand, 24992418 - 24992514
Alignment:
Q  349 ggtaaaggctttttcccatatgtacatactaagtgcta-ggctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaaaaataattaaaa 445  Q
    ||||| |||||||||||||||||  ||| ||||| ||| || | |||||| || || |||||| ||||||||| |||| |||||||||| ||||||||    
T  24992418 ggtaagggctttttcccatatgtctatattaagtactagggatatgttatgaattataagtagaaattcttgt-ttttgaaaagaaaaacaattaaaa 24992514  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 323 - 433
Target Start/End: Complemental strand, 243299 - 243187
Alignment:
Q  323 gttcgactagaaagaaaagctctcgaggtaaaggctttttccc-atatgtacatactaagtgctagg-ctgtgttattaagtagaagtagcaattcttgt 420  Q
    |||||| ||| ||| |||||| ||||||||| ||| ||||||| |||  | | ||||||||| |||| || ||||||||| |||  ||| ||||||||||    
T  243299 gttcgattaggaaggaaagctttcgaggtaatggcgttttccccatacattcttactaagtgttagggctttgttattaaataggggtatcaattcttgt 243200  T
Q  421 cttttaaaaagaa 433  Q
    ||||| |||||||    
T  243199 cttttgaaaagaa 243187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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