View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4356_high_7 (Length: 231)
Name: NF4356_high_7
Description: NF4356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4356_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 13647111 - 13646915
Alignment:
| Q |
20 |
acccaagtggcctatgaaagcagtatcaataagagaagcaagaggatcagcagcaacagctaatgctgagggtaatgcaatccctaatatctcccgagat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13647111 |
acccaagtggcctatgaaagcagtatcaataagagaagcaagaggatcagcagcaacagctaatgctgagggtaatgcaatccctaatatctcccgagat |
13647012 |
T |
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| Q |
120 |
agtgcatctagcttgaagacaagtctacattcacaatttagtgaaattcacataaattttattaaaattcaaagagtggcggaatgggagttagata |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13647011 |
agtgcatctagcttgaagacaagtctacattcacaatttagtgaaattcacataaattttattaaaattcaaagagtggcggaatgggagttagata |
13646915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 13747536 - 13747340
Alignment:
| Q |
20 |
acccaagtggcctatgaaagcagtatcaataagagaagcaagaggatcagcagcaacagctaatgctgagggtaatgcaatccctaatatctcccgagat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13747536 |
acccaagtggcctatgaaagcagtatcaataagagaagcaagaggatcagcagcaacagctaatgctgagggtaatgcaatccctaatatctcccgagat |
13747437 |
T |
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| Q |
120 |
agtgcatctagcttgaagacaagtctacattcacaatttagtgaaattcacataaattttattaaaattcaaagagtggcggaatgggagttagata |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13747436 |
agtgcatctagcttgaagacaagtctacattcacaatttagtgaaattcacataaattttattaaaattcaaagagtggcggaatgggagttagata |
13747340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 13628558 - 13628428
Alignment:
| Q |
20 |
acccaagtggcctatgaaagcagtatcaataagagaagcaagaggatcagcagcaacagctaatgctgagggtaatgcaatccctaatatctcccgagat |
119 |
Q |
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|||||| ||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||| || |
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| T |
13628558 |
acccaaatggcctatgaatgcagtgtcaataagagaagcaataggatcagcagcaacagctaatgcagagggtattgcaatccctaatatctcctttgaa |
13628459 |
T |
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| Q |
120 |
agtgcatctagcttgaagacaagtctacatt |
150 |
Q |
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|||||||| | |||||| | ||||||||||| |
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| T |
13628458 |
agtgcatccaacttgaaaataagtctacatt |
13628428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 13728970 - 13728840
Alignment:
| Q |
20 |
acccaagtggcctatgaaagcagtatcaataagagaagcaagaggatcagcagcaacagctaatgctgagggtaatgcaatccctaatatctcccgagat |
119 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||| || |
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| T |
13728970 |
acccaaatggcctatgaatgcagtgtcaataagagaagcaataggatcagcagcaacagctaatgcagagggtattgcaatccctaatatctcctttgaa |
13728871 |
T |
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| Q |
120 |
agtgcatctagcttgaagacaagtctacatt |
150 |
Q |
| |
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|||||||| | |||||| | ||||||||||| |
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| T |
13728870 |
agtgcatccaacttgaaaataagtctacatt |
13728840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 9276209 - 9276120
Alignment:
| Q |
24 |
aagtggcctatgaaagcagtatcaataagagaagcaagaggatcagcagcaacagctaatgctgagggtaatgcaatccctaatatctcc |
113 |
Q |
| |
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|||||||||||||| || || || ||||||||||||| ||||||||||||||||| | ||| || || ||||||||||| | ||||||| |
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| T |
9276209 |
aagtggcctatgaatgctgtgtctataagagaagcaattggatcagcagcaacagcaagtgcagatgggaatgcaatcccaagtatctcc |
9276120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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