View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4356_low_2 (Length: 405)
Name: NF4356_low_2
Description: NF4356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4356_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 52188215 - 52188508
Alignment:
| Q |
17 |
atgaacttgagttgctacttgtgnnnnnnncttgattgtacatcttaaatcacatgttggaccagtaattttagtcattcacttcatagaagcttcactg |
116 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
52188215 |
atgaacttgagttgctacttgtgaaaaaaacttgattgtacatcttaaatcacatgttggaccagtaattttagtcattcacttcataggagcttcactg |
52188314 |
T |
|
| Q |
117 |
atactaatttacnnnnnnn-gtcgtaataagtttataagtattaagtagattccttcnnnnnnnnnnn---gtatcaagtagattgttcaatcatgtatt |
212 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
52188315 |
atactaatttacaaaaaaaagtcgtaataagtttataagtattaagtagattccttcaaaaaaaaaaaaaagtattaagtagattgttcaatcatgtatt |
52188414 |
T |
|
| Q |
213 |
ttttaaaatttaattttaggcacatgcagacttagatatttgagtatcatattttaagtagattgtttgatacctttgttctattttacacctg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52188415 |
ttttaaaatttaattttaggcacatgcagacttagatatttgagtatcatattttaagtagattgtttgatacctttgttctattttacacctg |
52188508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 38990475 - 38990538
Alignment:
| Q |
17 |
atgaacttgagttgctacttgtgnnnnnnncttgattgtacatcttaaatcacatgttggacca |
80 |
Q |
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||||||||||||||||| ||||| |||||||||||||||| ||||| ||||||||||| |
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| T |
38990475 |
atgaacttgagttgctagttgtgaaaaaaacttgattgtacatcttgaatcatatgttggacca |
38990538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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