View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4356_low_3 (Length: 306)
Name: NF4356_low_3
Description: NF4356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4356_low_3 |
| |
|
[»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 37503904 - 37503600
Alignment:
Q |
1 |
taatgtaggagagtttgatattactattagagtagataatgatgatggtgattctggtgtatcatctagtgaaagaccaaataaaaataatattgcttaa |
100 |
Q |
|
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
37503904 |
taatgtaggagagtttgatattattattagagtagataatgatgatggtgattctggtgtatcatctagtgaaagaccaaataaaaataatattgcttaa |
37503805 |
T |
|
Q |
101 |
tttgttagcaaaataaatggaagaagaaatacaacctgtgaagaggaaattttccatggaatcatcttctacttcaataatatacatttcatgatctgtc |
200 |
Q |
|
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
37503804 |
tttgttagcaaaataaatggaagaggaaatacaacctgtgaagaggaaattttccatggaatcatcttctacttcaataatatacatttcatgatctgtc |
37503705 |
T |
|
Q |
201 |
aagtttaaagatcaatcaatggtgctgattaaaggattattaaggaatgggtattgctctacnnnnnnngcatgtcttctatttacaaattactagtcca |
300 |
Q |
|
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| |
|
|
T |
37503704 |
aagtttaaagatcaatgaatggtgctgattcaaggattattaaggaatgggtattgttctactttttttgcatgtcttctatttacaaa-tactagtcca |
37503606 |
T |
|
Q |
301 |
tctttc |
306 |
Q |
|
|
|||||| |
|
|
T |
37503605 |
tctttc |
37503600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3252 times since January 2019
Visitors: 8679