View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4356_low_5 (Length: 254)
Name: NF4356_low_5
Description: NF4356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4356_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 30841504 - 30841280
Alignment:
| Q |
13 |
aaaattatcatgttgtatctttttacatgtgtgcttctgaatatctaatttcgtactctctgtatctttctttcttgtggaaattagttggagttgacca |
112 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||| |
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| T |
30841504 |
aaaattatcatgttttatctttttacatgtgtgcttctgaatatctaatttcgtactctctgaatctttctttcttctggaaattagttggagttaacca |
30841405 |
T |
|
| Q |
113 |
aaaagctggattgactgtagaatgtggagaagatatgttgaatacaatcatagcaataaaaatatctatccttataacattttcgagtctgattttgttc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||| |
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| T |
30841404 |
aaaagctggattgactgtagaatgtggagaagatatgttgaatacaatcatagcaataaaaatatctctccttataagattttcgagtcttattttgttc |
30841305 |
T |
|
| Q |
213 |
tattgtcgccactaattgttgcaac |
237 |
Q |
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||||||||||||||||||||||||| |
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| T |
30841304 |
tattgtcgccactaattgttgcaac |
30841280 |
T |
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