View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4377-Insertion-1 (Length: 1053)
Name: NF4377-Insertion-1
Description: NF4377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4377-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 894; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 894; E-Value: 0
Query Start/End: Original strand, 8 - 1032
Target Start/End: Complemental strand, 43135957 - 43134925
Alignment:
| Q |
8 |
atatctccactatgtgtgtcagtgtcactatccaccccgtcaaataagtacgactagtaacggttgtttgagtttagacgtacatttacatatggattca |
107 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43135957 |
atatctccactatgtgtgttagtgtcactatccaccccgtcaaataagtacgactagtaacggttgtttgagtttagacgtacatttacatatggattca |
43135858 |
T |
|
| Q |
108 |
agagcattctataatattcaaccatttagtcttaattatatcgtgagtggaaagcatcaaatatgaaagaactaccagtaccaaatgtaagtcgtgctta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43135857 |
agagcattctataatattcaaccatttagtcttaattatatcgtgagtggaaagcatcaaatatgaaagaactaccggtaccaaatgtaagtcgtgctta |
43135758 |
T |
|
| Q |
208 |
gggaaagtatgaagaaatgtctattccccctaactcaaggcattgtgcaagatacattctccactaaccctaaaccgaactagcccctattgaccataaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43135757 |
gggaaagtatgaagaaatgtctattccccctaactcaaggcattgtgcaagatacattctccactaaccctaaaccgaactagcccctattgaccataaa |
43135658 |
T |
|
| Q |
308 |
ctttgtatcattgacatgactaat-aannnnnnnnggacagacacatgactaattaataacatgaatttcaccatgtttttaatttccttaagttaaggg |
406 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43135657 |
ctttgtatcattgacatgactaattaattttttttggacagacgcatgactaattaataacatgaatttcaccatgtttttaatttccttaagttaaggg |
43135558 |
T |
|
| Q |
407 |
ccttaatgaaaaatagtactcaattgaacattctacctctcatttcttgccagagaacaactagcaacaaagggtttttgaatagaagataaagaaaata |
506 |
Q |
| |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43135557 |
ccttaacgaaatatagtactcaattgaacattctacctctcatttcttgccagagaacaactagcaacaaagggtttttgaatagaagataaagaaaata |
43135458 |
T |
|
| Q |
507 |
tgttacaacaaaatacaaacgtggaaggatgagtacatgatgaaattgcaagcagagaagtgctagtagtgaccgagaatgcgcagacaaaatcacaaac |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43135457 |
tgttacaacaaaatacaaacgtggaaggatgagtacatgatgaaattgcaagcagagaagtgctagtagtgaccgagaatgcgcagacaaaatcacaaac |
43135358 |
T |
|
| Q |
607 |
aatgagttgaaatttttaagtaaaattgtaatgaggaattctaaattgagattctagttaagggcccaggttgttgacatgatggtgcagctgttggagt |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43135357 |
aatgagttgaaatttttaagtaaaattgtagtgaggaatcctaaattgagattctagttaagggcccaggttgttgacatgatggtgcagctgttggagt |
43135258 |
T |
|
| Q |
707 |
tgttgtggtcaaggcatgggagcatatggaaagggcaaatggtgttcaagcactatttagctcgttgaaggatatttgcaaggagcgtcttcgggaggca |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43135257 |
tgttgtggtcaaggcatgggagcatatggaaaggacaaatggtgttcaagcactatttagctcgttgaaggatatttgcaaggagcgtcttcgggaggca |
43135158 |
T |
|
| Q |
807 |
aaggagtcctgcaaggctgatcatatagctgagatgcagtagaagcgagaaaaatctctccacatatatctgctctacttggtggatatcatgttgttcg |
906 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43135157 |
aaggaggcctgcaaggctgatcatatagctgagatgcaggagaagcgagaaaaatctctccacatatatctgctctacttggtggatatcatgttgttcg |
43135058 |
T |
|
| Q |
907 |
ctgac-agagtgtcacctatgtggatgtcgcttacttgaggtatttcaaagacttggagcttgtctctga-tatggacgaggag-tgctg--cttgcaca |
1001 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||| ||||| |||||||| |
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| T |
43135057 |
ctaacaagagtgtcacctatgtggatgtcgcttacttgaggtatttcgaagacttggagcttgtctctgattatgcacgaggagttgctgcccttgcaca |
43134958 |
T |
|
| Q |
1002 |
catgtaca-tgagttt-attatgcctcccattt |
1032 |
Q |
| |
|
|||||||| ||||||| || ||||||||||||| |
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|
| T |
43134957 |
catgtacattgagtttaataatgcctcccattt |
43134925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 756 - 953
Target Start/End: Complemental strand, 17999448 - 17999251
Alignment:
| Q |
756 |
gcactatttagctcgttgaaggatatttgcaaggagcgtcttcgggaggcaaaggagtcctgcaaggctgatcatatagctgagatgcagtagaagcgag |
855 |
Q |
| |
|
|||| |||||||| |||||| ||||||| |||||||||||||| | ||||| || || ||| | | || |||| | |||||||||||| ||||||| |
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| T |
17999448 |
gcacgatttagctggttgaatgatattttcaaggagcgtcttcagaaggcatagcaggcctatatgt-tggtcatttggctgagatgcaggagaagcgga |
17999350 |
T |
|
| Q |
856 |
aaaaatctctccacatatatctgctctacttggtggatatcatgttgttcgctgaca-gagtgtcacctatgtggatgtcgcttacttgaggtatttca |
953 |
Q |
| |
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|| | ||| ||| ||||||| |||| |||||| ||| ||||||| | ||| |||||| ||||| |||||||||||||||| |||| |||||||| |||| |
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|
| T |
17999349 |
aacagtctttccgcatatatttgctatacttgatgggtatcatgctcttcactgacaagagtgccacctatgtggatgtcacttatttgaggtacttca |
17999251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 674 - 976
Target Start/End: Complemental strand, 1347821 - 1347517
Alignment:
| Q |
674 |
aggttgttgacatgatggtgcagctgttggagt-tgttgtggtcaaggcatgggagcatatggaaagggcaaatggtgttcaagcactatttagctcgtt |
772 |
Q |
| |
|
|||||||| |||||||||||||| ||||| | || | ||||||||||||| ||| | |||||||| || ||||| || | || |||||| | ||| |
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| T |
1347821 |
aggttgttaacatgatggtgcagtagttgggggatgatatggtcaaggcatgagagtaggtggaaaggaaaattggtgcccatgaacgatttagtttgtt |
1347722 |
T |
|
| Q |
773 |
gaaggatatttgcaaggagcgtcttcgggaggcaaaggagtcctgcaaggctgatcatatagctgagatgcagtagaagcgagaaaaatctctccacata |
872 |
Q |
| |
|
||||||||||| |||||||| ||||| | |||| | || | ||||| || | |||||| ||||||||| ||||||| || | ||||| | |||| |
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|
| T |
1347721 |
gaaggatattttcaaggagcatcttcagaaggctcataaggctcacaaggatggttatatagttgagatgcaagagaagcgggaccagtctcttcgcata |
1347622 |
T |
|
| Q |
873 |
tatctgctctacttggtggatatcatgttgttcgctgaca-gagtgtcacctatgtggatgtcgcttacttgaggtatttcaaagacttggagcttgtct |
971 |
Q |
| |
|
|| | ||||||||||||| ||||| | | ||| |||||| ||||| ||||||||||||||||||||| || ||||| |||| ||||||||||||||||| |
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|
| T |
1347621 |
aattttctctacttggtgggtatcacgctcttcactgacaagagtgccacctatgtggatgtcgcttagtttaggtacttcagagacttggagcttgtct |
1347522 |
T |
|
| Q |
972 |
ctgat |
976 |
Q |
| |
|
||||| |
|
|
| T |
1347521 |
ctgat |
1347517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 733 - 953
Target Start/End: Original strand, 28769115 - 28769335
Alignment:
| Q |
733 |
tggaaagggcaaatggtgttcaagcactatttagctcgttgaaggatatttgcaaggagcgtcttcgggaggcaaaggagtcctgcaaggctgatcatat |
832 |
Q |
| |
|
|||||||| ||||||||| | |||| |||||||| |||||| ||||||| |||||||||||||| | ||||| | || ||| || | || |||| | |
|
|
| T |
28769115 |
tggaaaggacaaatggtgcctatgcacgatttagctggttgaatgatattttcaaggagcgtcttcagaaggcacaataggcctacatgt-tggtcattt |
28769213 |
T |
|
| Q |
833 |
agctgagatgcagtagaagcgagaaaaatctctccacatatatctgctctacttggtggatatcatgttgttcgctgac-agagtgtcacctatgtggat |
931 |
Q |
| |
|
|||||||||||| ||||||| || ||||| ||| ||||||| |||| |||||| ||| ||||||| | ||| ||||| |||| | ||||||||||||| |
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|
| T |
28769214 |
ggctgagatgcaggagaagcggaaacaatctttccgcatatatttgctatacttgatgggtatcatgctcttcactgacaagagcgccacctatgtggat |
28769313 |
T |
|
| Q |
932 |
gtcgcttacttgaggtatttca |
953 |
Q |
| |
|
||| |||| |||||||| |||| |
|
|
| T |
28769314 |
gtcacttatttgaggtacttca |
28769335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 680 - 796
Target Start/End: Complemental strand, 26630425 - 26630308
Alignment:
| Q |
680 |
ttgacatgatggtgcagctgttggagt-tgttgtggtcaaggcatgggagcatatggaaagggcaaatggtgttcaagcactatttagctcgttgaagga |
778 |
Q |
| |
|
||||||||||||||||| |||||| || || ||||| |||||||||||||| |||||||| ||||| ||| || |||| ||||| || |||||||| |
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|
| T |
26630425 |
ttgacatgatggtgcagttgttggggtctgaagtggtgaaggcatgggagcaggtggaaaggacaaattgtggacatgcacgatttatctacttgaagga |
26630326 |
T |
|
| Q |
779 |
tatttgcaaggagcgtct |
796 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
26630325 |
aattttcaaggagcgtct |
26630308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 593 - 668
Target Start/End: Original strand, 32809820 - 32809895
Alignment:
| Q |
593 |
acaaaatcacaaacaatgagttgaaatttttaagtaaaattgtaatgaggaattctaaattgagattctagttaag |
668 |
Q |
| |
|
||||||||||| ||||||||| |||||| ||||||||||| |||||| ||| |||||||| ||||||||||||| |
|
|
| T |
32809820 |
acaaaatcacagacaatgagtcaaaatttcaaagtaaaattgcaatgagaaatactaaattgggattctagttaag |
32809895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 597 - 669
Target Start/End: Original strand, 27877189 - 27877261
Alignment:
| Q |
597 |
aatcacaaacaatgagttgaaatttttaagtaaaattgtaatgaggaattctaaattgagattctagttaagg |
669 |
Q |
| |
|
||||||||||||||||| ||||||| || | |||||| |||||||||| ||||||||||||||| |||||| |
|
|
| T |
27877189 |
aatcacaaacaatgagtcgaaatttctagatgaaattgcaatgaggaatcttaaattgagattctaattaagg |
27877261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 879 - 969
Target Start/End: Complemental strand, 26852945 - 26852854
Alignment:
| Q |
879 |
ctctacttggtggatatcatgttgttcgctgaca-gagtgtcacctatgtggatgtcgcttacttgaggtatttcaaagacttggagcttgt |
969 |
Q |
| |
|
||||||||||||| ||||||||||||| || ||| ||| | | |||||||||||| | ||||||||||| |||| |||| |||||||||| |
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|
| T |
26852945 |
ctctacttggtgggtatcatgttgttcactaacaagagcgcaaactatgtggatgtgacatacttgaggtacttcagagacctggagcttgt |
26852854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 922 - 976
Target Start/End: Complemental strand, 33319103 - 33319049
Alignment:
| Q |
922 |
ctatgtggatgtcgcttacttgaggtatttcaaagacttggagcttgtctctgat |
976 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||| |||||||||||||||||||| |
|
|
| T |
33319103 |
ctatgtggatgttgcttatttgaggtacttcaaaaacttggagcttgtctctgat |
33319049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 596 - 665
Target Start/End: Complemental strand, 35345469 - 35345400
Alignment:
| Q |
596 |
aaatcacaaacaatgagttgaaatttttaagtaaaattgtaatgaggaattctaaattgagattctagtt |
665 |
Q |
| |
|
|||||||| |||||||||||||||| |||| ||||||| ||||| ||| ||||||||||||||||||| |
|
|
| T |
35345469 |
aaatcacatgcaatgagttgaaatttctaagaaaaattgcaatgaaaaatcctaaattgagattctagtt |
35345400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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