View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4377-Insertion-4 (Length: 661)

Name: NF4377-Insertion-4
Description: NF4377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4377-Insertion-4
NF4377-Insertion-4
[»] chr4 (10 HSPs)
chr4 (235-626)||(43008306-43008691)
chr4 (7-104)||(43008161-43008257)
chr4 (149-295)||(33648197-33648344)
chr4 (170-292)||(684154-684276)
chr4 (203-295)||(1845876-1845968)
chr4 (172-265)||(37182217-37182310)
chr4 (151-295)||(42747079-42747223)
chr4 (162-282)||(16962830-16962950)
chr4 (263-295)||(959089-959121)
chr4 (203-263)||(7095596-7095656)
[»] chr1 (7 HSPs)
chr1 (172-295)||(21322492-21322615)
chr1 (150-294)||(32815760-32815905)
chr1 (172-295)||(29855949-29856073)
chr1 (234-295)||(50899057-50899118)
chr1 (172-222)||(10608960-10609010)
chr1 (253-295)||(30871972-30872014)
chr1 (224-294)||(48729065-48729135)
[»] chr5 (5 HSPs)
chr5 (198-266)||(42158277-42158345)
chr5 (205-295)||(28228862-28228952)
chr5 (158-263)||(37442563-37442668)
chr5 (188-250)||(32303646-32303708)
chr5 (203-295)||(28217978-28218070)
[»] chr8 (7 HSPs)
chr8 (224-287)||(8983764-8983827)
chr8 (234-293)||(7913342-7913401)
chr8 (173-295)||(34072857-34072977)
chr8 (252-294)||(43562034-43562076)
chr8 (160-264)||(43846259-43846364)
chr8 (172-216)||(3434791-3434835)
chr8 (263-295)||(38006586-38006618)
[»] chr6 (1 HSPs)
chr6 (170-293)||(3644753-3644876)
[»] chr3 (4 HSPs)
chr3 (188-295)||(40355900-40356007)
chr3 (150-247)||(35310401-35310499)
chr3 (173-295)||(20991575-20991697)
chr3 (253-295)||(32535579-32535621)
[»] chr7 (3 HSPs)
chr7 (148-295)||(31756779-31756929)
chr7 (172-246)||(3756397-3756471)
chr7 (264-295)||(31756888-31756919)
[»] chr2 (2 HSPs)
chr2 (172-292)||(6620025-6620143)
chr2 (264-295)||(8514054-8514085)
[»] scaffold0004 (1 HSPs)
scaffold0004 (172-247)||(130712-130787)


Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 235 - 626
Target Start/End: Original strand, 43008306 - 43008691
Alignment:
Q  235 tgagttaactcacataaatgtatttttcaacggaaatgagcaaaaacagatgggagaagaggaatcctttaaaattttgtgagaaaaagatagtgcaaac 334  Q
    ||||| |||||||| | ||| |||| |  |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  43008306 tgagtaaactcacacagatgcatttcttgacggaaatgagcaaaaacagatggtagaagaggaatcttttaaaattttgtgagaaaaagatagtgcaaac 43008405  T
Q  335 ttatctcttatttattattaaattaacaaacaatattggtnnnnnnncctaaccttgtaccaattgccaattggagtatctaatagctaagtgaaaactg 434  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43008406 ttatctcttatttattattaaattaacaaacaatattggtgggggggcctaaccttgtaccaattgccaattggagtatctaatagctaagtgaaaactg 43008505  T
Q  435 gcagaaaacaaggtgcatttagatctctacttacaaaactctataaaaggggaagtacttgtagttgtatggatatccaagcacaaaataccatctatag 534  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |      |||||||||||||||||||||| |||||||||||||    
T  43008506 gcagaaaacaaggtgcatttagatctctacttacaaaactctataaaaggggaagtcc------ttgtatggatatccaagcacaacataccatctatag 43008599  T
Q  535 ctagcatcttaaatttctaattttgtttcatttttcttcaaatcattcaaaagaacattatggtgtctaaagtagaagaagcaatgaagaag 626  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43008600 ctagcatcttaaatttctaattttgtttcattgttcttcaaatcattcaaaagaacattatggtgtctaaagtagaagaagcaatgaagaag 43008691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 43008161 - 43008257
Alignment:
Q  7 acacataagtttggcgccctcgaaaaaattaagctttcaccactagctgctaactaatcttcacacctctaacaagttaaccattaacatttgcttat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  43008161 acacataagtttggcgccctcgaaaaaattaagctttcaccactagctgctaactaatcttcacacctctaataagttaa-cattaacatttgcttat 43008257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 149 - 295
Target Start/End: Original strand, 33648197 - 33648344
Alignment:
Q  149 tgagtaccactcttcttccat-tatttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcac 247  Q
    ||||||||  |||||| |||| |||||||| |||||||| ||||||||  |||||||||||||||| | ||| || ||||||||| |||||||||||  |    
T  33648197 tgagtaccgttcttctcccatatatttttgctcattcccgtcaaaatagtcgagtgtgagttaactaacgcagatgtattctcagcgtgagttaacttgc 33648296  T
Q  248 ataaatgtatttttcaacggaaatgagcaaaaacagatgggagaagag 295  Q
      |  ||||||||||| ||| |||||||||||| |||||| |||||||    
T  33648297 gcatgtgtatttttcagcggcaatgagcaaaaatagatggtagaagag 33648344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 170 - 292
Target Start/End: Complemental strand, 684276 - 684154
Alignment:
Q  170 tatttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaacggaa 269  Q
    ||||||||||||||||| | ||||||  ||||  |||||||||||| ||| || ||||||||  |||| |||||||||||| |||||||| ||||| |||    
T  684276 tatttttgttcattcccgttaaaatagtcgagcatgagttaactcacgcagatgtattctcatcgtgaattaactcacatagatgtatttctcaacagaa 684177  T
Q  270 atgagcaaaaacagatgggagaa 292  Q
    |||| ||||| || ||| |||||    
T  684176 atgaacaaaagcatatgagagaa 684154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 295
Target Start/End: Original strand, 1845876 - 1845968
Alignment:
Q  203 gtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaacggaaatgagcaaaaacagatgggagaagag 295  Q
    ||||||||||| |||||| | |||||| ||| |||||||||||||  |  ||||||| ||| | | ||||||||||||||| |||||||||||    
T  1845876 gtgagttaacttatgcatgtgtattctgagtatgagttaactcacgcatgtgtatttctcagcagcaatgagcaaaaacagttgggagaagag 1845968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 265
Target Start/End: Complemental strand, 37182310 - 37182217
Alignment:
Q  172 tttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaac 265  Q
    |||||| || |||||||||||||||||||| || ||||||||||  ||| |  ||| |||  |||||||||||||| ||  |||||||||||||    
T  37182310 tttttgctcgttcccatcaaaataaccgagcgtaagttaactcacacatgtgcattttcaacgtgagttaactcacgtaggtgtatttttcaac 37182217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 295
Target Start/End: Original strand, 42747079 - 42747223
Alignment:
Q  151 agtaccactcttcttccat-tatttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacat 249  Q
    ||||| ||||||||||||| | |||||| | |||||| ||||||||   ||| ||  ||||||||| |||  | ||||||||| ||||||||||||||      
T  42747079 agtacgactcttcttccatctgtttttgctaattcccgtcaaaatagtagagcgtc-gttaactcacgcaggtgtattctcagcgtgagttaactcacgc 42747177  T
Q  250 aaatgtatttttcaacggaaatgagcaaaaacagatgggagaagag 295  Q
    |  ||||||| ||| || || ||||||||| |||||||||||||||    
T  42747178 atgtgtatttctcagcgaaagtgagcaaaaccagatgggagaagag 42747223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 162 - 282
Target Start/End: Original strand, 16962830 - 16962950
Alignment:
Q  162 tcttccattatttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtattttt 261  Q
    ||||||||  ||||| |||||||| |||||||||  |||| ||||||||||||| | | || |||| |||||||||||| ||| ||  | |||||||| |    
T  16962830 tcttccatagtttttattcattcctatcaaaatagtcgagcgtgagttaactcacgtagatgtattttcagtgtgagttgacttacgcatatgtatttct 16962929  T
Q  262 caacggaaatgagcaaaaaca 282  Q
    || | | ||||||| ||||||    
T  16962930 cagcaggaatgagccaaaaca 16962950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 959121 - 959089
Alignment:
Q  263 aacggaaatgagcaaaaacagatgggagaagag 295  Q
    |||||||||||||||||| ||||||||||||||    
T  959121 aacggaaatgagcaaaaatagatgggagaagag 959089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 7095656 - 7095596
Alignment:
Q  203 gtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttca 263  Q
    ||||||||||||| |||  | |||| ||| ||| ||||||||||||||| |||||||||||    
T  7095656 gtgagttaactcacgcaagtgtattttcaatgtaagttaactcacataagtgtatttttca 7095596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 172 - 295
Target Start/End: Complemental strand, 21322615 - 21322492
Alignment:
Q  172 tttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaacggaaat 271  Q
    |||||| ||| |||| |||||||| ||||| ||||||||||||| |||  | ||||||||  || |||||||||||  | |||||||| ||||||| |||    
T  21322615 tttttgctcaatcccgtcaaaatagccgagggtgagttaactcacgcaggtgtattctcaacgtaagttaactcacgcagatgtatttctcaacgggaat 21322516  T
Q  272 gagcaaaaacagatgggagaagag 295  Q
    |||||||| |||||||||||||||    
T  21322515 gagcaaaaccagatgggagaagag 21322492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 150 - 294
Target Start/End: Complemental strand, 32815905 - 32815760
Alignment:
Q  150 gagtaccactcttcttccat-tatttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcaca 248  Q
    ||||||||| |||||||||| | |||||| ||||| |  ||||||||| | |||||||| ||||||| |||||| |||||||   ||||||||||||||     
T  32815905 gagtaccacccttcttccatctgtttttgctcatttctgtcaaaataatctagtgtgagctaactcacgcatatgtattctcgacgtgagttaactcacg 32815806  T
Q  249 taaatgtatttttcaacggaaatgagcaaaaacagatgggagaaga 294  Q
     |  |||||||| ||  || ||||| ||||||||||||||||||||    
T  32815805 catgtgtattttccagtgggaatgaccaaaaacagatgggagaaga 32815760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 172 - 295
Target Start/End: Original strand, 29855949 - 29856073
Alignment:
Q  172 tttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttt-tcaacggaaa 270  Q
    |||||| |||||||||||||||||  |||| |||||||  |||| ||| || |||||||||   |||||||||||   |  |||||||| ||| ||||||    
T  29855949 tttttgctcattcccatcaaaatagtcgagcgtgagttgcctcaggcaaatgtattctcagcacgagttaactcatgcaggtgtattttctcagcggaaa 29856048  T
Q  271 tgagcaaaaacagatgggagaagag 295  Q
    ||||||||||||||| |||||||||    
T  29856049 tgagcaaaaacagattggagaagag 29856073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 50899118 - 50899057
Alignment:
Q  234 gtgagttaactcacataaatgtatttttcaacggaaatgagcaaaaacagatgggagaagag 295  Q
    ||||||||||||||  |  ||||||| ||| |||||||||||||||||||||| ||||||||    
T  50899118 gtgagttaactcacgcatgtgtatttctcagcggaaatgagcaaaaacagatgagagaagag 50899057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 10609010 - 10608960
Alignment:
Q  172 tttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatat 222  Q
    ||||||||| ||||| |||||||||| ||| ||||||||||||| ||||||    
T  10609010 tttttgttcgttcccgtcaaaataacagagcgtgagttaactcacgcatat 10608960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 30871972 - 30872014
Alignment:
Q  253 tgtatttttcaacggaaatgagcaaaaacagatgggagaagag 295  Q
    ||||||||||||| |  ||||||||||||||||||||||||||    
T  30871972 tgtatttttcaactgggatgagcaaaaacagatgggagaagag 30872014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 224 - 294
Target Start/End: Original strand, 48729065 - 48729135
Alignment:
Q  224 tattctcagtgtgagttaactcacataaatgtatttttcaacggaaatgagcaaaaacagatgggagaaga 294  Q
    |||| |||| ||||||||||||||  |  |||||||||||  ||||||||||||||| |||||| ||||||    
T  48729065 tattttcagcgtgagttaactcacgcatgtgtatttttcagtggaaatgagcaaaaatagatggaagaaga 48729135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 198 - 266
Target Start/End: Original strand, 42158277 - 42158345
Alignment:
Q  198 cgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaacg 266  Q
    ||||||||||||| ||||||||| | |||| | | |||||||||||||| |||||||||||||||||||    
T  42158277 cgagtgtgagttatctcatgcatgtgtatttttaatgtgagttaactcaaataaatgtatttttcaacg 42158345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 295
Target Start/End: Original strand, 28228862 - 28228952
Alignment:
Q  205 gagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaacggaaatgagcaaaaacagatgggagaagag 295  Q
    ||||||||||| |||| | ||||||||  ||||||||||| ||  |  ||||||| ||| |||| |||| |||||||||||||||||||||    
T  28228862 gagttaactcacgcatgtgtattctcatcgtgagttaacttacgcatgtgtatttctcagcggagatgaacaaaaacagatgggagaagag 28228952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 263
Target Start/End: Complemental strand, 37442668 - 37442563
Alignment:
Q  158 ctcttcttccat-tatttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgta 256  Q
    |||||||||||| | |||||| |||||||| ||||| || ||||| ||||||||||||||||| || |||| |||   ||||||||||||| ||  ||||    
T  37442668 ctcttcttccatctgtttttgctcattcccgtcaaa-tagccgagcgtgagttaactcatgcagatgtattttcaacatgagttaactcacgtaggtgta 37442570  T
Q  257 tttttca 263  Q
    |||||||    
T  37442569 tttttca 37442563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 32303646 - 32303708
Alignment:
Q  188 tcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacata 250  Q
    ||||||||  |||| ||||||||||||| |||| | |||| |||| |||||||||||||||||    
T  32303646 tcaaaatagtcgagcgtgagttaactcacgcatgtgtattttcagcgtgagttaactcacata 32303708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 295
Target Start/End: Original strand, 28217978 - 28218070
Alignment:
Q  203 gtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaacggaaatgagcaaaaacagatgggagaagag 295  Q
    ||||||||||||| |||  | ||||||||  ||||||||||| ||  |  ||||||| |||||||  ||||||||||||| |||| |||||||    
T  28217978 gtgagttaactcacgcaggtgtattctcatcgtgagttaacttacgcatgtgtatttctcaacggtgatgagcaaaaacatatggaagaagag 28218070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 8983764 - 8983827
Alignment:
Q  224 tattctcagtgtgagttaactcacataaatgtatttttcaacggaaatgagcaaaaacagatgg 287  Q
    ||||||||| |||||||||||||| ||||||||||| ||| ||| |||||||||||| ||||||    
T  8983764 tattctcagcgtgagttaactcacgtaaatgtatttctcagcgggaatgagcaaaaagagatgg 8983827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 293
Target Start/End: Original strand, 7913342 - 7913401
Alignment:
Q  234 gtgagttaactcacataaatgtatttttcaacggaaatgagcaaaaacagatgggagaag 293  Q
    |||||||||| |||| |  ||||||| ||| ||||||||||||||||||||||| |||||    
T  7913342 gtgagttaacacacacatgtgtatttctcagcggaaatgagcaaaaacagatggaagaag 7913401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 295
Target Start/End: Complemental strand, 34072977 - 34072857
Alignment:
Q  173 ttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaacggaaatg 272  Q
    ||||| |||||||| | ||||||  ||||  |||||||||||| | |  | ||||||||| ||||||||||| ||  || ||||||||||| ||| || |    
T  34072977 ttttgctcattcccgttaaaataggcgagcatgagttaactcacgtaggtgtattctcagcgtgagttaacttacgcaagtgtatttttcagcgg-aacg 34072879  T
Q  273 agcaaaaacagatgggagaagag 295  Q
    |||||||| ||||||||||||||    
T  34072878 agcaaaaa-agatgggagaagag 34072857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 43562034 - 43562076
Alignment:
Q  252 atgtatttttcaacggaaatgagcaaaaacagatgggagaaga 294  Q
    ||||||||||||||||| ||||||||||||||| | |||||||    
T  43562034 atgtatttttcaacggagatgagcaaaaacagacgagagaaga 43562076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 264
Target Start/End: Original strand, 43846259 - 43846364
Alignment:
Q  160 cttcttccat-tatttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatt 258  Q
    |||||||||| | |||||||||| |||| | ||||||  |||| ||||||||||||| |||| | |||||||||   ||||||||||||  |  ||||||    
T  43846259 cttcttccatctgtttttgttcactcccgttaaaatagtcgagcgtgagttaactcacgcatgtatattctcagcaagagttaactcacgcaggtgtatt 43846358  T
Q  259 tttcaa 264  Q
    ||||||    
T  43846359 tttcaa 43846364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 3434791 - 3434835
Alignment:
Q  172 tttttgttcattcccatcaaaataaccgagtgtgagttaactcat 216  Q
    |||||| ||||||||||||||||| ||||| |||| |||||||||    
T  3434791 tttttgctcattcccatcaaaatagccgagcgtgaattaactcat 3434835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 38006586 - 38006618
Alignment:
Q  263 aacggaaatgagcaaaaacagatgggagaagag 295  Q
    ||||| |||||||||||||||||||||||||||    
T  38006586 aacgggaatgagcaaaaacagatgggagaagag 38006618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 293
Target Start/End: Original strand, 3644753 - 3644876
Alignment:
Q  170 tatttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaacggaa 269  Q
    |||||||| |||||| | ||||||||    || ||||||||||| |||||  | |||| |||||||||||||||| ||| |  | ||||| ||| |||||    
T  3644753 tatttttgctcattctcgtcaaaatagttaagcgtgagttaacttatgcaggtgtattttcagtgtgagttaacttacacatgtctatttctcagcggaa 3644852  T
Q  270 atgagcaaaaacagatgggagaag 293  Q
    |||||||||| |||||||||||||    
T  3644853 atgagcaaaatcagatgggagaag 3644876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 295
Target Start/End: Original strand, 40355900 - 40356007
Alignment:
Q  188 tcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaacggaaatgagcaaaaacagatgg 287  Q
    |||||||| ||||| ||||||||||||||| | || |||| |||| |||||||||| |||  | |||||||| | |||| ||| |||||||| |||||||    
T  40355900 tcaaaatagccgagcgtgagttaactcatgtagatgtattttcagcgtgagttaacccacgcagatgtatttcttaacgaaaacgagcaaaagcagatgg 40355999  T
Q  288 gagaagag 295  Q
     |||||||    
T  40356000 aagaagag 40356007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 35310499 - 35310401
Alignment:
Q  150 gagtaccactcttcttccat-tatttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcac 247  Q
    ||||||| ||| ||| |||| |||||||| |||| ||| |||||||| ||||| |||||||||||||  ||  | ||||||||||||||||||||||||    
T  35310499 gagtaccgctcatctcccatctatttttgctcatccccgtcaaaatagccgagcgtgagttaactcacacaggtgtattctcagtgtgagttaactcac 35310401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 295
Target Start/End: Original strand, 20991575 - 20991697
Alignment:
Q  173 ttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaacggaaatg 272  Q
    ||||| |||||||| |||||||| ||||| |||||||||| ||  ||  | |||| |||| ||||||||||||||  | |||||| | ||| | |  |||    
T  20991575 ttttgctcattcccgtcaaaatagccgagcgtgagttaacccacacaggtgtattgtcagcgtgagttaactcacgcagatgtatctctcagcagggatg 20991674  T
Q  273 agcaaaaacagatgggagaagag 295  Q
    ||||||| |||||||||||||||    
T  20991675 agcaaaaccagatgggagaagag 20991697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 32535621 - 32535579
Alignment:
Q  253 tgtatttttcaacggaaatgagcaaaaacagatgggagaagag 295  Q
    ||||||||||||||  ||||||||||||||||||| |||||||    
T  32535621 tgtatttttcaacgtgaatgagcaaaaacagatggaagaagag 32535579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 148 - 295
Target Start/End: Complemental strand, 31756929 - 31756779
Alignment:
Q  148 ttgagtaccactcttcttccat-tatttttgttcattcccatcaaaataaccgagtgtga--gttaactcatgcatatttattctcagtgtgagttaact 244  Q
    |||| |||||||||||| |||| | |||||| ||||| || | ||||||   ||||||||  ||||||||| ||| || ||||||||| |||||||||||    
T  31756929 ttgaataccactcttctcccatctgtttttgctcatttccgtaaaaatagttgagtgtgatagttaactcacgcagatatattctcagcgtgagttaact 31756830  T
Q  245 cacataaatgtatttttcaacggaaatgagcaaaaacagatgggagaagag 295  Q
    ||   |  |||||||||||   | |||||||||||| ||||||||||||||    
T  31756829 catgcaggtgtatttttcagtcggaatgagcaaaaatagatgggagaagag 31756779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 3756397 - 3756471
Alignment:
Q  172 tttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactca 246  Q
    |||||| |||||||| ||||||||  ||||||||||||||||| ||||  |  |||||||| |||||||||||||    
T  3756397 tttttgctcattcccgtcaaaatagtcgagtgtgagttaactcgtgcaagtggattctcagcgtgagttaactca 3756471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 264 - 295
Target Start/End: Original strand, 31756888 - 31756919
Alignment:
Q  264 acggaaatgagcaaaaacagatgggagaagag 295  Q
    ||||||||||||||||||||||||||||||||    
T  31756888 acggaaatgagcaaaaacagatgggagaagag 31756919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 292
Target Start/End: Original strand, 6620025 - 6620143
Alignment:
Q  172 tttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattctcagtgtgagttaactcacataaatgtatttttcaacggaaat 271  Q
    |||||| |||||||| ||||||||   ||| |||||||||||||||||  | ||||||| || |||||||||||||  ||  |||||| |||    ||||    
T  6620025 tttttgctcattcccgtcaaaatagttgagcgtgagttaactcatgcaggtgtattctctgtatgagttaactcacgcaa--gtatttctcagtaaaaat 6620122  T
Q  272 gagcaaaaacagatgggagaa 292  Q
    |||||||||||||| ||||||    
T  6620123 gagcaaaaacagataggagaa 6620143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 264 - 295
Target Start/End: Original strand, 8514054 - 8514085
Alignment:
Q  264 acggaaatgagcaaaaacagatgggagaagag 295  Q
    ||||||||||||||||||||||||||||||||    
T  8514054 acggaaatgagcaaaaacagatgggagaagag 8514085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 130787 - 130712
Alignment:
Q  172 tttttgttcattcccatcaaaataaccgagtgtgagttaactcatgcatatttattct-cagtgtgagttaactcac 247  Q
    ||||||||||||||| ||||| |||||||  ||||||||||||| |||  | |||| | ||||||||||||||||||    
T  130787 tttttgttcattcccgtcaaa-taaccgaacgtgagttaactcacgcaggtgtatttttcagtgtgagttaactcac 130712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 6578 times since January 2019
Visitors: 5215