View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4377-Insertion-7 (Length: 608)
Name: NF4377-Insertion-7
Description: NF4377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4377-Insertion-7 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 7 - 608
Target Start/End: Complemental strand, 33253353 - 33252754
Alignment:
| Q |
7 |
aattaatccatgttcatactgttatgtcattaacgatgacagtttacgaaattgtagggcaaaacagaaaattttatagaaatcaaaattaatgttctct |
106 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33253353 |
aattaatccatgtccatgctgttatgtcattaacgatgacagtttacgaaattgtagggcaaaacagaaaattttatagaaatcaaaattaatgttctct |
33253254 |
T |
|
| Q |
107 |
atatttaaacacacaagnnnnnnnnttactagttagctcaatagacccatcagtttcgctcccaaccgactattttttgtgtgaaactccatcggatcat |
206 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33253253 |
atatttaaacacacaagaaaaaaaattacttgttagctcaatagacccatcagtttcgctcccaattgactattttttgtgtgaaactccatcggatcat |
33253154 |
T |
|
| Q |
207 |
aactctctatgacttttttcagcaaggtgattaattatgaggggtctattgaactcgtagaatttccaagtcatgaatggtgatcaatgcactctacgag |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33253153 |
aactctctatgacttttttcagcaaggtgattaattatgaggggtctattgaattcgtagaatttccaagtcatgaatggtgatcaatgcactctacgag |
33253054 |
T |
|
| Q |
307 |
caatcccttgaaccattactctcaaactttgcaagcccaacactttgaacaacctccatcttctttggaagagaggaaaactaacaataaattcatcaat |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33253053 |
caatcccttgaaccattactctcaaactttgcaagcccaacactttgaacaacctccatcttctttgaaagagaggaaaactaacaataaattcatcaat |
33252954 |
T |
|
| Q |
407 |
ttttaaacaaagaaatatttataaatctaaatttatcatcatgctaannnnnnnggtcttaatcacgattcagaaggaaaggaacaccgatagtccggtc |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33252953 |
ttttaaacaaagaaatatttataaatctaaatttatcatcatgctaatttttttggtcttaatcatgattcagaaggaaaggaacaccgatagtccggtc |
33252854 |
T |
|
| Q |
507 |
tttggtcaagagatataggtaacatcttattaataatgtagttaaaatatgaacttggattctcttgattcattcttaacaggagtttgttaactacttg |
606 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33252853 |
tttggtcaagag--ataggtaacatcttactaataatttagttaaaatatgaacttggattctcttgattcattcttaataggagtttgttaactacttg |
33252756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3044 times since January 2019
Visitors: 6220