View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4377_high_3 (Length: 378)

Name: NF4377_high_3
Description: NF4377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4377_high_3
NF4377_high_3
[»] chr5 (2 HSPs)
chr5 (29-357)||(18649979-18650307)
chr5 (259-309)||(34903408-34903458)
[»] chr2 (2 HSPs)
chr2 (237-309)||(1900596-1900668)
chr2 (234-303)||(42088434-42088503)
[»] chr8 (3 HSPs)
chr8 (234-304)||(10409716-10409786)
chr8 (235-279)||(20305676-20305720)
chr8 (235-279)||(21092309-21092353)
[»] chr7 (1 HSPs)
chr7 (234-288)||(28517705-28517759)
[»] scaffold1137 (1 HSPs)
scaffold1137 (266-309)||(820-863)
[»] chr6 (2 HSPs)
chr6 (226-309)||(6067582-6067665)
chr6 (235-309)||(6420300-6420374)
[»] chr4 (2 HSPs)
chr4 (234-309)||(26009751-26009826)
chr4 (261-309)||(37175806-37175854)
[»] chr1 (2 HSPs)
chr1 (235-280)||(26478007-26478052)
chr1 (234-279)||(35838654-35838699)


Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 29 - 357
Target Start/End: Original strand, 18649979 - 18650307
Alignment:
Q  29 atggcatcaagtaatgccccttgaccagttcagttctactattatggatctggaagacatctggaaaattcgagtcccatgatttaagtatcttaattga 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18649979 atggcatcaagtaatgccccttgaccagttcagttctactattatggatctggaagacatctggaaaattcgagtcccatgatttaagtatcttaattga 18650078  T
Q  129 atgttcatattctgtagatagaaaaatgtggatgagtcaaaatcgtgccatcactattgtttgcctagtgcctacaaaagtctaaagattatcattttat 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18650079 atgttcatattctgtagatagaaaaatgtggatgagtcaaaatcgtgccatcactattgtttgcctagtgcctacaaaagtctaaagattatcattttat 18650178  T
Q  229 taagaaaaatgttaacaagtgccttaaagacacttgataagaagcttaaaatagtaactttgtcttgcaaattgtgcattccttaaccactacctcaggg 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  18650179 taagaaaaatgttaacaagtgccttaaagacacttgataagaagcttaaaatagtaactttgtcttgcaaattgtgcattccttaaccactacctctggg 18650278  T
Q  329 cggaggcaatggttgttagtattgatgat 357  Q
    |||||||||||||||||||||||||||||    
T  18650279 cggaggcaatggttgttagtattgatgat 18650307  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 309
Target Start/End: Complemental strand, 34903458 - 34903408
Alignment:
Q  259 cacttgataagaagcttaaaatagtaactttgtcttgcaaattgtgcattc 309  Q
    ||||||||||||| |||||| |||||||||| ||||| |||||||||||||    
T  34903458 cacttgataagaaacttaaagtagtaactttatcttgaaaattgtgcattc 34903408  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 1900668 - 1900596
Alignment:
Q  237 atgttaacaagtgccttaaagacacttgataagaagcttaaaatagtaactttgtcttgcaaattgtgcattc 309  Q
    ||||||||||||||| ||| |||||||||||||||||||||| |||||| ||| ||||  |||||||||||||    
T  1900668 atgttaacaagtgccctaaggacacttgataagaagcttaaagtagtaattttatcttagaaattgtgcattc 1900596  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 42088434 - 42088503
Alignment:
Q  234 aaaatgttaacaagtgccttaaagacacttgataagaagcttaaaatagtaactttgtcttgcaaattgt 303  Q
    |||||| ||||||||||| |||||||| | |||||||| ||||||||||||||||| ||||| |||||||    
T  42088434 aaaatgctaacaagtgccctaaagacattagataagaaacttaaaatagtaactttatcttggaaattgt 42088503  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 10409786 - 10409716
Alignment:
Q  234 aaaatgttaacaagtgccttaaagacacttgataagaagcttaaaatagtaactttgtcttgcaaattgtg 304  Q
    ||||| |||||||||||| | |||||||||||||||| | ||||||||| |||||| ||||| || |||||    
T  10409786 aaaatattaacaagtgcccttaagacacttgataagaggtttaaaatagaaactttatcttgaaacttgtg 10409716  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 20305676 - 20305720
Alignment:
Q  235 aaatgttaacaagtgccttaaagacacttgataagaagcttaaaa 279  Q
    ||||| ||||||||||||||| | |||||||||||||| ||||||    
T  20305676 aaatgctaacaagtgccttaacggcacttgataagaagtttaaaa 20305720  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 21092309 - 21092353
Alignment:
Q  235 aaatgttaacaagtgccttaaagacacttgataagaagcttaaaa 279  Q
    ||||| ||||||||||||||| | |||||||||||||| ||||||    
T  21092309 aaatgctaacaagtgccttaacggcacttgataagaagtttaaaa 21092353  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 28517705 - 28517759
Alignment:
Q  234 aaaatgttaacaagtgccttaaagacacttgataagaagcttaaaatagtaactt 288  Q
    |||||||||||||||||| ||| |||||||||||| ||||||||| ||| |||||    
T  28517705 aaaatgttaacaagtgccataaggacacttgataaaaagcttaaagtagcaactt 28517759  T

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Target: scaffold1137 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1137
Description:

Target: scaffold1137; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 820 - 863
Alignment:
Q  266 taagaagcttaaaatagtaactttgtcttgcaaattgtgcattc 309  Q
    |||||| |||||| |||||||||||||||| |||||||||||||    
T  820 taagaaacttaaagtagtaactttgtcttggaaattgtgcattc 863  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 309
Target Start/End: Complemental strand, 6067665 - 6067582
Alignment:
Q  226 tattaagaaaaatgttaacaagtgccttaaagacacttgataagaagcttaaaatagtaactttgtcttgcaaattgtgcattc 309  Q
    |||||||||||||| ||||||||||| ||| ||| ||||||||||| | |||| ||  |||||| ||||  |||||||| ||||    
T  6067665 tattaagaaaaatgctaacaagtgccctaacgacccttgataagaaacataaagtatcaactttatcttagaaattgtgtattc 6067582  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 6420374 - 6420300
Alignment:
Q  235 aaatgttaacaagtgccttaaagacacttgataagaagcttaaaatagtaactttgtcttgcaaattgtgcattc 309  Q
    ||||| ||||||||||| | | | ||||||||||||| |||||| |||||||||| | ||| ||| |||||||||    
T  6420374 aaatgctaacaagtgcccttagggcacttgataagaaacttaaagtagtaactttattttggaaaatgtgcattc 6420300  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 309
Target Start/End: Complemental strand, 26009826 - 26009751
Alignment:
Q  234 aaaatgttaacaagtgccttaaagacacttgataagaagcttaaaatagtaactttgtcttgcaaattgtgcattc 309  Q
    |||||||||||||||||| | |||||||||||||||||  ||||| ||  |||||| ||||| || ||||| ||||    
T  26009826 aaaatgttaacaagtgcccttaagacacttgataagaaatttaaagtaaaaactttatcttggaatttgtgtattc 26009751  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 37175854 - 37175806
Alignment:
Q  261 cttgataagaagcttaaaatagtaactttgtcttgcaaattgtgcattc 309  Q
    |||||||||||||||||| ||| |||||| ||||| ||||| |||||||    
T  37175854 cttgataagaagcttaaagtagcaactttatcttggaaattatgcattc 37175806  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 26478007 - 26478052
Alignment:
Q  235 aaatgttaacaagtgccttaaagacacttgataagaagcttaaaat 280  Q
    |||||||||||||| || |||| |||||||||||||| ||||||||    
T  26478007 aaatgttaacaagtaccctaaaaacacttgataagaaacttaaaat 26478052  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 35838699 - 35838654
Alignment:
Q  234 aaaatgttaacaagtgccttaaagacacttgataagaagcttaaaa 279  Q
    |||||| ||||||||||||| |||||||||| ||| ||||||||||    
T  35838699 aaaatgctaacaagtgcctttaagacacttgttaaaaagcttaaaa 35838654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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