View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4377_high_6 (Length: 333)
Name: NF4377_high_6
Description: NF4377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4377_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 20473259 - 20473581
Alignment:
| Q |
1 |
taaccgtgttgtgacgaacgtaacgatgaagaccatgattgactgctgcacgagcaagtttctcggtgctgacattagcagcacgtagaagagagagttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20473259 |
taaccgtgttgtgacgaacgtaacgatgaagaccatgattgactgctgcacgagcaagtttctcggtgctgacattagcagcacgtagaagagagagttg |
20473358 |
T |
|
| Q |
101 |
accagcgtcaacggaggtgtaagagaggaaaatgtggttgctgatagcaagacccaaaacagcgtcaccaacgaactcgagacgttcgtaggaaacagat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20473359 |
accagcgtcaacggaggtgtaagagaggaaaatatggttgctgatagcaagacccaaaacagcgtcaccaacgaactcgagacgttcgtaggaaacagat |
20473458 |
T |
|
| Q |
201 |
tcggggtaagaagtgtgggttagagcatcttccagaagcttcttgttgaggaatgtatagccgattatcttctccactgctgcaactgaagcttccatct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20473459 |
tcggggtaagaagtgtgggttagagcatcttctagaagcttcttgttgaggaatgtgtagccgattatcttctccactgctgcaactgaagcttccatct |
20473558 |
T |
|
| Q |
301 |
ccattttcatcttctgttctgtg |
323 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
20473559 |
ccattttcatcttctgttctgtg |
20473581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 161 - 317
Target Start/End: Complemental strand, 20475102 - 20474947
Alignment:
| Q |
161 |
agcgtcaccaacgaactcgagacgttcgtaggaaacagattcggggtaagaagtgtgggttagagcatcttccagaagcttcttgttgaggaatgtatag |
260 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |||| |||||||| | ||||||||||||||||||||| ||| |
|
|
| T |
20475102 |
agcgtcgccaacgaactcgagacgttcgtaggaaacggattcggggtaagaagtatgagttaatgcatcttcta-aagcttcttgttgaggaatgtgtag |
20475004 |
T |
|
| Q |
261 |
ccgattatcttctccactgctgcaactgaagcttccatctccattttcatcttctgt |
317 |
Q |
| |
|
|| |||||||| ||||||||||||| |||| ||||||||||||| |||||||||||| |
|
|
| T |
20475003 |
ccaattatcttttccactgctgcaattgaaccttccatctccatcttcatcttctgt |
20474947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 48 - 315
Target Start/End: Original strand, 44256728 - 44256995
Alignment:
| Q |
48 |
gcacgagcaagtttctcggtgctgacattagcagcacgtagaagagagagttgaccagcgtcaacggaggtgtaagagaggaaaatgtggttgctgatag |
147 |
Q |
| |
|
||||||||||||||||||||||||||||| || | ||| || ||||||||||||| ||||||| |||||| |||||| | ||||||||||||| |
|
|
| T |
44256728 |
gcacgagcaagtttctcggtgctgacattggcggaacggaggagagagagttgacgttggtcaacgttagtgtaaacgaggaagagatggttgctgatag |
44256827 |
T |
|
| Q |
148 |
caagacccaaaacagcgtcaccaacgaactcgagacgttcgtaggaaacagattcggggtaagaagtgtgggttagagcatcttccagaagcttcttgtt |
247 |
Q |
| |
|
| | || || || || || || | ||||||||||||||| |||||||| |||||||||||||||| |||||||| ||| ||||| ||||| |||||||| |
|
|
| T |
44256828 |
cgtggcctaatacggcatcgccgatgaactcgagacgttcataggaaacggattcggggtaagaagagtgggttaaagcttcttctagaaggttcttgtt |
44256927 |
T |
|
| Q |
248 |
gaggaatgtatagccgattatcttctccactgctgcaactgaagcttccatctccattttcatcttct |
315 |
Q |
| |
|
||| || || |||||||||||||||||||||||||| ||| ||||||||| ||| ||||| |||| |
|
|
| T |
44256928 |
tctgaaggtgtacccgattatcttctccactgctgcaacagaatcttccatcttcatcttcatattct |
44256995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3135 times since January 2019
Visitors: 6227