View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4377_low_1 (Length: 533)
Name: NF4377_low_1
Description: NF4377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4377_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 26276143 - 26276497
Alignment:
| Q |
1 |
cttcaatctgacctagctaagattgataggaagagaacaccttgggtgattgccttggtacatgcaccttggtataatactaatgaggcacatgaaggtg |
100 |
Q |
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| T |
26276143 |
cttcaatctgacctagctaagattgataggaagagaacaccttgggtgattgccttggtacatgcaccttggtataatactaatgaggcacatgaaggtg |
26276242 |
T |
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| Q |
101 |
aaggtgaagaaatgagacaggccatggaagatttgctttatgaggctcatgttgacttggttttttcagggcatgtccatgcatacgaacgctttgtatg |
200 |
Q |
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| T |
26276243 |
aaggtgaagaaatgagacaggccatggaagaattgctttatgaggctcgtgttgacttggttttttcagggcatgtccatgcatacgaacgctttgtatg |
26276342 |
T |
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| Q |
201 |
tcatattaatattcatcatgccacgattctttaccnnnnnnnttgagacatcggagaaaatttagaaacacaaaaatatgaaatctatttctaatttcgt |
300 |
Q |
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| T |
26276343 |
tcatattaatattcatcatgccacgattctttaccaaaaaaattgagacatcggagaaaatttagaaacacaaaaatatgaaatctatctctaatttcgt |
26276442 |
T |
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| Q |
301 |
ccctaaatattagaggtgctaaatttatagatacgtgtttcggtgtttgtctcta |
355 |
Q |
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| T |
26276443 |
ccctaaatattagaggcgctaaatttatagatacatgtttcggtgtttgtctcta |
26276497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 425 - 518
Target Start/End: Original strand, 26276567 - 26276660
Alignment:
| Q |
425 |
gatcccttgcagactagaatctatgacaataaggctgatccatgtggtccgttgtacgtgacaattggtgatggaggaaaccgtgaaggacttg |
518 |
Q |
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| T |
26276567 |
gatcccttgcagactagaatctatgacaataaggctgatccatgtggtccgttgtacgtgacaattggtgatggaggaaaccgtgaaggacttg |
26276660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 42274103 - 42273916
Alignment:
| Q |
17 |
ctaagattgataggaagagaacaccttgggtgattgccttggtacatgcaccttggtataatactaatgaggcacatgaaggtgaaggtgaagaaatgag |
116 |
Q |
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|||||||||||||| || ||||||||||| ||| | |||| |||||||||||||||| |||||||||||||||| |||||||||||||| ||||| |
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| T |
42274103 |
ctaagattgatagggtgaagacaccttgggttattacaatggttcatgcaccttggtatactactaatgaggcacatcaaggtgaaggtgaatccatgag |
42274004 |
T |
|
| Q |
117 |
acaggccatggaagatttgctttatgaggctcatgttgacttggttttttcagggcatgtccatgcatacgaacgctttgtatgtcat |
204 |
Q |
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| T |
42274003 |
acaagctatggaagagttgctttttaaggctcgtgttgatttggtttttgctggacatgttcatgcgtatgaacgatttgtatgtcat |
42273916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 518
Target Start/End: Complemental strand, 42273798 - 42273735
Alignment:
| Q |
455 |
aaggctgatccatgtggtccgttgtacgtgacaattggtgatggaggaaaccgtgaaggacttg |
518 |
Q |
| |
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||||||||| |||| ||||| |||| ||||||||||| |||||||||||||| || ||||||| |
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| T |
42273798 |
aaggctgattcatgcggtccaatgtatgtgacaattggggatggaggaaaccgcgagggacttg |
42273735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 42292842 - 42292880
Alignment:
| Q |
160 |
gttttttcagggcatgtccatgcatacgaacgctttgta |
198 |
Q |
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|||||| |||||||||| ||||||||||||||||||||| |
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| T |
42292842 |
gtttttacagggcatgttcatgcatacgaacgctttgta |
42292880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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