View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4377_low_2 (Length: 329)
Name: NF4377_low_2
Description: NF4377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4377_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 102 - 302
Target Start/End: Original strand, 27497915 - 27498115
Alignment:
| Q |
102 |
ataaatataaccattaaaagaatattatttttgcagactcattggacttataggtgatttcatatatcaaaaccattcccatatttcttataagatggaa |
201 |
Q |
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| T |
27497915 |
ataaatataaccattaaaagaatattatttttgcagactcattggacttataggtgatttcatatatcaaaataattcccatatttcttataagatggaa |
27498014 |
T |
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| Q |
202 |
taaattgaatatttattaagtgctaatgttaaaacttataaataattaatatgtacatagagactcgacacttatatggaaagtaaatatgagtatactc |
301 |
Q |
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| T |
27498015 |
gaaattgaatatttattaagtactaatgttaaaacttataaataattaatgtgtacatagagactcgacacttatatggagagtaaatatgagtatactc |
27498114 |
T |
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| Q |
302 |
a |
302 |
Q |
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| T |
27498115 |
a |
27498115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 301
Target Start/End: Original strand, 27496188 - 27496373
Alignment:
| Q |
111 |
accattaaaagaatattatttttgcagactcattgga-cttataggtgatttcatatatcaaaaccattcccatatttcttataagatggaataaattga |
209 |
Q |
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| T |
27496188 |
accattagaagaatattatttttgcagattcattggatcttgtagttgattccata-------accattcccatgtttattataagattgaaggaattga |
27496280 |
T |
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| Q |
210 |
atatttattaagtgctaatgttaaaacttataaataattaatatgtacata-gagactcgacacttatatggaaagtaaatatgagtatactc |
301 |
Q |
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| T |
27496281 |
atgtttattaagtactaacgttaaaaattgtaaataagtaatgtgtacatacgagaatcggcactcatactgagagtaaaaatgagtatactc |
27496373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 27497892 - 27497922
Alignment:
| Q |
15 |
attatacttgtactcacatatggataaatat |
45 |
Q |
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| T |
27497892 |
attatacttgtactcacatatggataaatat |
27497922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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