View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4383-Insertion-3 (Length: 1065)
Name: NF4383-Insertion-3
Description: NF4383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4383-Insertion-3 |
 | |
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| [»] scaffold0198 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 344 - 902
Target Start/End: Original strand, 28987001 - 28987565
Alignment:
| Q |
344 |
tcaccgtaagcgaaaagcaatagaatttcgacagagacactttctctgtctcttcaatttgatcaatttcaatctcaaattcttcttaatccctaacttc |
443 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28987001 |
tcaccgtaagcgaaaagcaatagaatttcgacagagacactttctctgtctcttcaatttgatcaatttcaatctcaaattcttcttaatccctaacttc |
28987100 |
T |
|
| Q |
444 |
aaagcttaaatcttttcgatttttgggttctcctttctctcttcacttccgatcgatccaattctcttctcatggctacgatcggacacaacaatctaaa |
543 |
Q |
| |
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|||||||||||| |||| |||||||||| || ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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|
| T |
28987101 |
aaagcttaaatc-tttccctttttgggttttcgtttctcttttcacttccgatcgatccaattcacttctcatggctacgatcggacacaacaatctcaa |
28987199 |
T |
|
| Q |
544 |
tgcaaaattggta--tttatttcctctgtttctcttccttcatcnnnnnnnncttt--cttccgattataccctctaatttcgttttgtaatcaggttct |
639 |
Q |
| |
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||||||||||||| ||| |||| |||||||||||||||||| ||| ||||||||||||||||||| |||||||| |||||||||||| |
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| T |
28987200 |
tgcaaaattggtatttttttttcatctgtttctcttccttcaggattcatcttttttaattccgattataccctctaacttcgttttttaatcaggttct |
28987299 |
T |
|
| Q |
640 |
tctcggtgatatgggtgctggaaaatctagtcttgttttaagatttgtcaagggtcaatttctcgaatttcaggttattttcatcaa-nnnnnnnaatta |
738 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
28987300 |
tcttggtgatatgggtgctggaaaatctagtcttgttttaagatttgttaagggtcaatttctcgaatttcaggttattttcatcaattttttttagtta |
28987399 |
T |
|
| Q |
739 |
ttgttattttcattttctccatttgattgggaagat-tttaagttcaatgggtttatgatgtatcatagacatgtgctgaattgagctagtttattctga |
837 |
Q |
| |
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|||||||||| ||||||| ||||||||||||| | ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28987400 |
ttgttattttgattttctggatttgattgggaaattgtttaagttcaatgggtttacgatgcatcatagacatgtgctgaattgagctagtttattctga |
28987499 |
T |
|
| Q |
838 |
tttggctatgagattattcaattagaagttgggttttgttg-ttttatatcaagtgtttcttaata |
902 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28987500 |
tttggctatgagattattcaattagaagttgggttttgttgtttttatatcaagtgtttcttaata |
28987565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 7 - 233
Target Start/End: Original strand, 28986637 - 28986879
Alignment:
| Q |
7 |
agaatttgaacatcatatctaccccgtaagaggagacattagagcagtcaatgatagatgaaaacacttgatgcattattattcatacgagccttgccaa |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| |||| || ||||||||| |
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| T |
28986637 |
agaatttgaacatcatatctaccccgtaagaggagacattagaacaatcaatgatatatgaaaacacttgatgcattattatgcatatgaaccttgccaa |
28986736 |
T |
|
| Q |
107 |
caaagtgaaagaaatcaaatttgt----------------catggaaacgtattcatttctttcttgacttgccaactttgtaagcaaaaccaattttgc |
190 |
Q |
| |
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||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28986737 |
taaagtgaaagaaatcaaatttgtattcaaatgttccttccatgagaacgtattcatttctttcttgacttgccaactttgtaagcaaaaccaattttgc |
28986836 |
T |
|
| Q |
191 |
atttgcagctgcaatgcatgagtcaaagtcaaggaaccaataa |
233 |
Q |
| |
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| |||||| || ||||||||| ||||||||||||||||||||| |
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| T |
28986837 |
aattgcagttggaatgcatgactcaaagtcaaggaaccaataa |
28986879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 908 - 1054
Target Start/End: Original strand, 39491082 - 39491231
Alignment:
| Q |
908 |
ttgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaaccattcaaataccattaaaatgaaaat-aatca |
1006 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||| |
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| T |
39491082 |
ttgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaaccactcaaatatcattaaaatgaaaatcaatca |
39491181 |
T |
|
| Q |
1007 |
gtgcatattcaaaag--tactttctatcacatattcacttttattttgtc |
1054 |
Q |
| |
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|||||||||||||| || ||||||||||||||||||||||||||||| |
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|
| T |
39491182 |
ctgcatattcaaaaggtaaccttctatcacatattcacttttattttgtc |
39491231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 908 - 1054
Target Start/End: Original strand, 14959177 - 14959326
Alignment:
| Q |
908 |
ttgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaaccattcaaataccattaaaatgaaaat-aatca |
1006 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| | |
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| T |
14959177 |
ttgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaaccactcaaataccattaaaatgaaaatcaatta |
14959276 |
T |
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| Q |
1007 |
gtgcatattcaaaag--tactttctatcacatattcacttttattttgtc |
1054 |
Q |
| |
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|||||||||||||| || |||||||||||||||| |||||||||||| |
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| T |
14959277 |
ctgcatattcaaaaggtaaccttctatcacatattcatttttattttgtc |
14959326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 1e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 906 - 1054
Target Start/End: Original strand, 2224044 - 2224195
Alignment:
| Q |
906 |
cattgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaaccattcaaataccattaaaatgaaaat-aat |
1004 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
2224044 |
cattgctatataccacgattaaatatttcaagaataaatcacgaatcacatatatttcatagtttttgaccattcaaataccattaaaatgaaaatcaat |
2224143 |
T |
|
| Q |
1005 |
cagtgcatattcaaaag--tactttctatcacatattcacttttattttgtc |
1054 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
2224144 |
cagtgcatattcaaaaggtaaccttctatcacatattcacttttattttgtc |
2224195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 908 - 1054
Target Start/End: Complemental strand, 27585595 - 27585446
Alignment:
| Q |
908 |
ttgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaaccattcaaataccattaaaatgaaaat-aatca |
1006 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| | |
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| T |
27585595 |
ttgctatataccacaattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaaccactcaaatatcattaaaatgaaaatcaatta |
27585496 |
T |
|
| Q |
1007 |
gtgcatattcaaaag--tactttctatcacatattcacttttattttgtc |
1054 |
Q |
| |
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|||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
27585495 |
ctgcatattcaaaaggtaaccttctatcacatattcacttttattttgtc |
27585446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0198 (Bit Score: 103; Significance: 1e-50; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 908 - 1054
Target Start/End: Original strand, 18420 - 18569
Alignment:
| Q |
908 |
ttgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaaccattcaaataccattaaaatgaaaat-aatca |
1006 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||| | |
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|
| T |
18420 |
ttgctatataccacgattaaatacttcaagaataaatcacgaatcacatatatttcatagtttttaaccactcaaataccattaaaatgaaaatcaatta |
18519 |
T |
|
| Q |
1007 |
gtgcatattcaaaag--tactttctatcacatattcacttttattttgtc |
1054 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||||||||||||||||| |
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|
| T |
18520 |
ctgcatattcaaaaggtaaccttccatcacatattcacttttattttgtc |
18569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 6e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 903 - 1054
Target Start/End: Original strand, 35181759 - 35181912
Alignment:
| Q |
903 |
caacattgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaaccattcaaataccattaaaatgaaaat- |
1001 |
Q |
| |
|
||||| ||||||||| |||||||||| |||| ||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||| |
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|
| T |
35181759 |
caacactgctatatatcacgattaaaaactttaagaataaatcacgaattacatatatctcctagtttttaaccattcaaataccattaaaatgaaaatc |
35181858 |
T |
|
| Q |
1002 |
aatcagtgcatattcaaaagt-actttctatcacatattcacttttattttgtc |
1054 |
Q |
| |
|
||||| || |||||||| ||| || ||||||||||||||||||||||||||||| |
|
|
| T |
35181859 |
aatcattgtatattcaatagtaaccttctatcacatattcacttttattttgtc |
35181912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 909 - 978
Target Start/End: Original strand, 1249511 - 1249580
Alignment:
| Q |
909 |
tgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaaccat |
978 |
Q |
| |
|
||||||||| ||||||||||||||| | |||||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
1249511 |
tgctatatatcacgattaaatactttacgaataaatcatgaatcacatatattccatagttgttaaccat |
1249580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 631 - 715
Target Start/End: Original strand, 32675868 - 32675952
Alignment:
| Q |
631 |
tcaggttcttctcggtgatatgggtgctggaaaatctagtcttgttttaagatttgtcaagggtcaatttctcgaatttcaggtt |
715 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| || |||||||| | ||||| ||||||||||| || |||||||||||| |
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|
| T |
32675868 |
tcaggttcttcttggtgatatgggtgctggaaaatccagccttgttttgcgttttgttaagggtcaattccttgaatttcaggtt |
32675952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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