View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4383-Insertion-9 (Length: 722)

Name: NF4383-Insertion-9
Description: NF4383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4383-Insertion-9
NF4383-Insertion-9
[»] chr3 (1 HSPs)
chr3 (68-718)||(45905392-45906037)


Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 68 - 718
Target Start/End: Complemental strand, 45906037 - 45905392
Alignment:
Q  68 taagtgttgcatgtatgtggaagttattcaaagtgttgttgtatactttgatctattattcttcgcacatcttttgcttggttaagtgnnnnnnnnaata 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||        ||||    
T  45906037 taagtgttgcatgtatgtggaagttattcaaagtgttgttgtatactttgatctatt---cttcgcacatcttttgcttggttaagtgttttttt-aata 45905942  T
Q  168 tattttgcttactnnnnnnnnnngaagttattcaaagattcagtcattgtaaaagcaaatgaaagagtctgtctaggttgcatgatatatgattcatttt 267  Q
    |||||||||||||          |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45905941 tattttgcttactaaaaaaaa--gaagttattcaaagattcagtcgttgtaaaagcaaatgaaagagtctgtctaggttgcatgatatatgattcatttt 45905844  T
Q  268 acttcnnnnnnnnggcctcaaatttatttttgaaaattgaactagtattaatttcactcactactttcgcaacgaattaagtaacctaattaactaatca 367  Q
    ||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45905843 actt-ttttttttggcctcaaatttatttttgaaaattgaactagtattaatttcactcactactttcgcaacgaattaagtaacctaattaactaatca 45905745  T
Q  368 tttaaatgcatttggttgtttgttttaaaaaatttcaacttccaatttcgctgtaggcttacaagttattaatgattgtaacagccagatgagtggtgat 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  45905744 tttaaatgcatttggttgtttgttttaaaaaatttcaacttccaatttcgctgcaggcttacaagttatgaatgattgtaacagccagatgagtggtgat 45905645  T
Q  468 tagtgattaccaacttgggtgttgaagctctgcagttccagtcggaagtgccaaatattgtttgtgaatgtgttatttgatgttcttccttgagcatttg 567  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45905644 tagtgattaccaacttgggtgttgaagctctgcagttccagtcggaagtgccaaatattgtttgtgaatgtgttatttgatgttcttccttgagcatttg 45905545  T
Q  568 ggttcatgttaatgaaatgttgtgcgattgcataactgtgataatttctttgagatcaaatccttgctatttatagatgtcgaggtatattctagat--g 665  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  45905544 ggttcatgttaatgaaatgttgtgcgattgcataactgtgataatttctttgagatcaaatccttgctatttatagatgtcgaggtatattctagattag 45905445  T
Q  666 tttacttaagtattctagaaattataacttaacaagagtgattctacatcttt 718  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45905444 tttacttaagtattctagaaattataacttaacaagagtgattctatatcttt 45905392  T

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