View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4383_high_2 (Length: 527)
Name: NF4383_high_2
Description: NF4383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4383_high_2 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 186 - 516
Target Start/End: Complemental strand, 70400 - 70070
Alignment:
| Q |
186 |
gtcattacatttaaataaaggtcggcagaaagatgttgcatgtctctaactcttgtgggcgagaatttgaatcgtttgtataccaaagattcttggtcta |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
70400 |
gtcattacatttaaataaaggtcggcagaaagatgttgcatgtctctaactcttgtgggcgagaatttgaatcgtttgtataccaaagattcttggtcta |
70301 |
T |
|
| Q |
286 |
aaaggagtttggaatggtggtagatttgaggtcacattcacttatggtaccagtccactattgcccttatctcttgttgaatgagaaacttttttaccgg |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
70300 |
aaaggagtttggaatggtggtagatttgaggtcacattcacttatggtaccagtccactattgcccttatctcttgttgaatgagaaacttttttaccgg |
70201 |
T |
|
| Q |
386 |
gtcattagaatcattgaattccaccacctgaaaaattgattatgtgtgtggtgagtcttgatactcgtgatataaaccaatacaactctcactctgcatc |
485 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
70200 |
gtcatgagaatcattgaattccaccacctgaaaaattgattatgtgtgtggtgagtcttgatactcgtgatataaaccaatacaactctcactctgcatc |
70101 |
T |
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| Q |
486 |
ctctccaccctttccacttgttttgctctgt |
516 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
70100 |
ctctccaccctttccacttgttttgctctgt |
70070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 70567 - 70458
Alignment:
| Q |
18 |
agatcgtgatgtaatcaagaggctcaatgttttgatagtcctaaatcattaatttattgttgtttcttgcgcttcttccgactcgccaacaataatatct |
117 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
70567 |
agatcgtgatgtaattaagaggctcaatgttttgatagtcctaaatcattaatttattgttgtttcttgcgcttcttccgacttgccaacaataatatct |
70468 |
T |
|
| Q |
118 |
ttcattacac |
127 |
Q |
| |
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|||||||||| |
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| T |
70467 |
ttcattacac |
70458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 186 - 516
Target Start/End: Original strand, 40895884 - 40896214
Alignment:
| Q |
186 |
gtcattacatttaaataaaggtcggcagaaagatgttgcatgtctctaactcttgtgggcgagaatttgaatcgtttgtataccaaagattcttggtcta |
285 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40895884 |
gtcattacatttaaataaaggtcggcagaaagatgttgcatgtctctaactcttgtgggcgagaatttgaatcgtttgtataccaaagattcttggtcta |
40895983 |
T |
|
| Q |
286 |
aaaggagtttggaatggtggtagatttgaggtcacattcacttatggtaccagtccactattgcccttatctcttgttgaatgagaaacttttttaccgg |
385 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40895984 |
aaaggagtttggaatggtggtagatttgaggtcacattcacttatggtaccagtccactattgcccttatctcttgttgaatgagaaacttttttaccgg |
40896083 |
T |
|
| Q |
386 |
gtcattagaatcattgaattccaccacctgaaaaattgattatgtgtgtggtgagtcttgatactcgtgatataaaccaatacaactctcactctgcatc |
485 |
Q |
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|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40896084 |
gtcatgagaatcattgaattccaccacctgaaaaattgattatgtgtgtggtgagtcttgatactcgtgatataaaccaatacaactctcactctgcatc |
40896183 |
T |
|
| Q |
486 |
ctctccaccctttccacttgttttgctctgt |
516 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
40896184 |
ctctccaccctttccacttgttttgctctgt |
40896214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 40895717 - 40895826
Alignment:
| Q |
18 |
agatcgtgatgtaatcaagaggctcaatgttttgatagtcctaaatcattaatttattgttgtttcttgcgcttcttccgactcgccaacaataatatct |
117 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40895717 |
agatcgtgatgtaattaagaggctcaatgttttgatagtcctaaatcattaatttattgttgtttcttgcgcttcttccgacttgccaacaataatatct |
40895816 |
T |
|
| Q |
118 |
ttcattacac |
127 |
Q |
| |
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|||||||||| |
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|
| T |
40895817 |
ttcattacac |
40895826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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