View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4383_low_10 (Length: 202)

Name: NF4383_low_10
Description: NF4383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4383_low_10
NF4383_low_10
[»] chr4 (5 HSPs)
chr4 (101-185)||(17539709-17539793)
chr4 (101-185)||(17538662-17538744)
chr4 (1-96)||(2031284-2031378)
chr4 (104-166)||(11913903-11913965)
chr4 (142-185)||(6686635-6686678)
[»] chr5 (1 HSPs)
chr5 (101-179)||(28151273-28151351)
[»] chr8 (4 HSPs)
chr8 (101-185)||(13274336-13274420)
chr8 (1-92)||(36245285-36245376)
chr8 (101-168)||(29275959-29276026)
chr8 (95-161)||(29261157-29261223)
[»] chr6 (3 HSPs)
chr6 (104-185)||(15953069-15953150)
chr6 (1-97)||(23343795-23343891)
chr6 (13-95)||(8779805-8779886)
[»] chr3 (1 HSPs)
chr3 (101-190)||(26362729-26362818)
[»] chr7 (1 HSPs)
chr7 (101-181)||(43697480-43697562)


Alignment Details
Target: chr4 (Bit Score: 77; Significance: 6e-36; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 17539793 - 17539709
Alignment:
Q  101 ataaatataagaatcaatttatgttaatgagaataatcaagagaggtttcaaggaaacttatctgtcttgattttgttgtagaat 185  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17539793 ataaatataagaatcaatttatgttaatgataataatcaagagaggtttcaaggaaacttatcagtcttgattttgttgtagaat 17539709  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 17538744 - 17538662
Alignment:
Q  101 ataaatataagaatcaatttatgttaatgagaataatcaagagaggtttcaaggaaacttatctgtcttgattttgttgtagaat 185  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||    
T  17538744 ataaatataagaatcaatttatgttaatgagaataatc--gagaggtttcaaggaaacttatatgtcttgattttgttgtagaat 17538662  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 2031284 - 2031378
Alignment:
Q  1 cctccacaagagttgctagttaaattgggaaggatttgcattagggttttagcacaatttgcttgcagaactgctcttcttttatacttttaagat 96  Q
    |||||||| ||||||||||||||||||||||  |||||| |||||||||| ||| | ||||| ||||||||||||||||||||||| |||||||||    
T  2031284 cctccacatgagttgctagttaaattgggaaaaatttgc-ttagggtttttgcaaattttgcctgcagaactgctcttcttttatatttttaagat 2031378  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 11913903 - 11913965
Alignment:
Q  104 aatataagaatcaatttatgttaatgagaataatcaagagaggtttcaaggaaacttatctgt 166  Q
    ||||||||||||| ||||||||||||||||||||| || ||| ||||||||||||||||||||    
T  11913903 aatataagaatcagtttatgttaatgagaataatctagggagatttcaaggaaacttatctgt 11913965  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 6686678 - 6686635
Alignment:
Q  142 agaggtttcaaggaaacttatctgtcttgattttgttgtagaat 185  Q
    |||| |||||||||||||||||||||||||||||||||| ||||    
T  6686678 agagatttcaaggaaacttatctgtcttgattttgttgtcgaat 6686635  T

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Target: chr5 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 28151273 - 28151351
Alignment:
Q  101 ataaatataagaatcaatttatgttaatgagaataatcaagagaggtttcaaggaaacttatctgtcttgattttgttg 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  28151273 ataaatataagaatcaatttatgttaatgagaataatcaagagaggtttcaaggtaacttatatgtcttgattttgttg 28151351  T

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Target: chr8 (Bit Score: 65; Significance: 9e-29; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 13274336 - 13274420
Alignment:
Q  101 ataaatataagaatcaatttatgttaatgagaataatcaagagaggtttcaaggaaacttatctgtcttgattttgttgtagaat 185  Q
    ||||||||||||||||||||||  ||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||    
T  13274336 ataaatataagaatcaatttatactaatgagaataattaagagagatttcaaggaaacttatctgtcttgatcttgttgtagaat 13274420  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 36245285 - 36245376
Alignment:
Q  1 cctccacaagagttgctagttaaattgggaaggatttgcattagggttttagcacaatttgcttgcagaactgctcttcttttatactttta 92  Q
    |||||||||||| |||||||||||||||| | || ||||||||||||||| |||||||||| ||||| || |||||| |||||||| |||||    
T  36245285 cctccacaagagctgctagttaaattggggatgagttgcattagggttttggcacaatttgtttgcataattgctctccttttatagtttta 36245376  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 29276026 - 29275959
Alignment:
Q  101 ataaatataagaatcaatttatgttaatgagaataatcaagagaggtttcaaggaaacttatctgtct 168  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||| ||| ||||||||||| ||||||    
T  29276026 ataaatataagaatcaatttatgttaatgggaataatcaagggagattttaaggaaacttacctgtct 29275959  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 29261223 - 29261157
Alignment:
Q  95 ataaacataaatataagaatcaatttatgttaatgagaataatcaagagaggtttcaaggaaactta 161  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| ||| ||| |||||||||||||||    
T  29261223 ataaatataaatataagaatcaatttatgttaatgggaataattaagggagatttcaaggaaactta 29261157  T

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Target: chr6 (Bit Score: 62; Significance: 5e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 15953150 - 15953069
Alignment:
Q  104 aatataagaatcaatttatgttaatgagaataatcaagagaggtttcaaggaaacttatctgtcttgattttgttgtagaat 185  Q
    ||||||||||| ||||||  ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15953150 aatataagaatgaatttaaattaatgagaatgatcaagagaggtttcaaggaaacttatctttcttgattttgttgtagaat 15953069  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 23343795 - 23343891
Alignment:
Q  1 cctccacaagagttgctagttaaattgggaaggatttgcattagggttttagcacaatttgcttgcagaactgctcttcttttatacttttaagata 97  Q
    ||||||||||||||||||||||||||||| | || ||||||||||||||| |||||||||||  |||| |||| |||||||||||| ||||||||||    
T  23343795 cctccacaagagttgctagttaaattggggatgaattgcattagggttttggcacaatttgcaagcaggactgttcttcttttatatttttaagata 23343891  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 8779805 - 8779886
Alignment:
Q  13 ttgctagttaaattgggaaggatttgcattagggttttagcacaatttgcttgcagaactgctcttcttttatacttttaaga 95  Q
    ||||| ||||||| |||||| |||||| |||||||||| ||| | ||||  ||||||||||||||||||||||| ||||||||    
T  8779805 ttgctggttaaatggggaagaatttgc-ttagggtttttgcagattttgtctgcagaactgctcttcttttatatttttaaga 8779886  T

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Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 26362818 - 26362729
Alignment:
Q  101 ataaatataagaatcaatttatgttaatgagaataatcaagagaggtttcaaggaaacttatctgtcttgattttgttgtagaataatat 190  Q
    |||||||||| |||||||| |   ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||    
T  26362818 ataaatataaaaatcaattaaatataatgagaataatcaagagagattttaaggaaacttatctgtcttgattttgttgtagaattatat 26362729  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 43697562 - 43697480
Alignment:
Q  101 ataaatataagaatcaatttatgt--taatgagaataatcaagagaggtttcaaggaaacttatctgtcttgattttgttgta 181  Q
    ||||||||||||||||||||||||  ||||  ||||||||||| ||| |||||||||||||||||||  ||||| ||||||||    
T  43697562 ataaatataagaatcaatttatgtgttaatatgaataatcaagggagatttcaaggaaacttatctgctttgatgttgttgta 43697480  T

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