View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4383_low_7 (Length: 249)
Name: NF4383_low_7
Description: NF4383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4383_low_7 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 3620930 - 3620686
Alignment:
| Q |
1 |
gagttttttgaacaagtgcttaaggaacatctcaatcctaataataggaagaaagatgatgaagagaaggatatagttgacgtgttacttgagttaaaaa |
100 |
Q |
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||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3620930 |
gagttctttgaacaagtcctcaaggaacatctcaatcctaataataggaaaaaagatgatgaagagaaggatatagttgacgtgttacttgagttaaaga |
3620831 |
T |
|
| Q |
101 |
atcagggtcgtctctcaattgatctcaccaatgataacatcaaagctgtcgttatggtatgttctcatgattttcaatat---ttctttttggttatatg |
197 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||| ||| ||| ||||| | ||||| ||| ||| |
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| T |
3620830 |
atcagggtcgtctctcaattgatctcaccaataatcacatcaaagccgtcgttatggtatgttctcgtgacttttaatatatatatttttttgttttata |
3620731 |
T |
|
| Q |
198 |
ccctgttatatagtgttcagaacactcttttcaagatattcttcg |
242 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||| |||| |
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| T |
3620730 |
ccctgttatataatgttccgaacactcttttcaagatattgttcg |
3620686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 3631327 - 3631164
Alignment:
| Q |
1 |
gagttttttgaacaagtgcttaaggaacatctcaatcctaataataggaagaaagatgatgaagagaaggatatagttgacgtgttacttgagttaaaaa |
100 |
Q |
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|||||| |||||||||| ||| | ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
3631327 |
gagtttcttgaacaagtccttcaagaacatctcaatcctaataatcggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaaga |
3631228 |
T |
|
| Q |
101 |
atcagggtcgtctctcaattgatctcaccaatgataacatcaaagctgtcgttatggtatgttc |
164 |
Q |
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| T |
3631227 |
atcagggtcgtctctcaattgatctcaccaatgatcacatcaaatccgtccttatggtatgttc |
3631164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 14758 - 14921
Alignment:
| Q |
1 |
gagttttttgaacaagtgcttaaggaacatctcaatcctaataataggaagaaagatgatgaagagaaggatatagttgacgtgttacttgagttaaaaa |
100 |
Q |
| |
|
|||||| |||||||||| ||| | ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
14758 |
gagtttcttgaacaagtccttcaagaacatctcaatcctaataatcggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaaga |
14857 |
T |
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| Q |
101 |
atcagggtcgtctctcaattgatctcaccaatgataacatcaaagctgtcgttatggtatgttc |
164 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||| |
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| T |
14858 |
atcagggtcgtctctcaattgatctcaccaatgatcacatcaaatccgtccttatggtatgttc |
14921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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