View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4390-Insertion-1 (Length: 1139)
Name: NF4390-Insertion-1
Description: NF4390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4390-Insertion-1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 680; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 92 - 838
Target Start/End: Original strand, 38963501 - 38964262
Alignment:
| Q |
92 |
atcactccgccgtaattcaacttctctcgttattcgctcttcttattctggaaatggttcttcccctaatgccttcaattccaggtttttcatctaatat |
191 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38963501 |
atcactccgccgtaattcaacttctctcgttattcgctcttcttattctggaaatggttcttcccctaatgccttcaattccaggtttttcatctaatat |
38963600 |
T |
|
| Q |
192 |
tcacctttttatttatcctttatgtctccgttaccgttaatttatggtttagttgattaattgaattgttggcaggaattctgaaattccatcgatgtct |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38963601 |
tcacctttttatttatcctttatgtctccgttaccgttaatttatggtttagttgattaattgaattgttggcaggaattctgaaattccatcgatgtct |
38963700 |
T |
|
| Q |
292 |
ccgtttgcactgtcaatgaatgaatctagtaagccaaaatggagaagggttttgctcaaagttagcggagaagcactcgctggagatcaggctcagaata |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38963701 |
ccgtttgcactgtcaatgaatgaatctagtaagccaaaatggagaagggttttgctcaaagttagcggagaagcacttgctggagatcaggctcagaata |
38963800 |
T |
|
| Q |
392 |
ttgaccctaaggtctacctgcaatttatatcattattctttgtattcaatatgctcaactaaattaatattatgtgtgtcagtcaaatattccgagcttt |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38963801 |
ttgaccctaaggtctacctgcaatttatatctttattctttgtattcaatctgctcaactaaattaatattatgtgtgtcagtcaaatattccgagcttt |
38963900 |
T |
|
| Q |
492 |
cagttataatatggtctttgattaaatattatgagtttcagtcatactgaaacaatgttttcttcaattacaatactactttcaccattagtttttcc-- |
589 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38963901 |
cagttataatatggtctttgattaaatattatgagtttcagtcatactgaaacaatgttttcttcaattacaatactactttcagcattagtttttccgg |
38964000 |
T |
|
| Q |
590 |
-------------aaaattgtctagtattaatgattacacagtaatttttcggtccacatgggttagtctggtggtgtaaccttgggaccttggactgtg |
676 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38964001 |
cctgtattaataaaaaattgtctagtattaatgattacacagtaatttttcggtccacatgggttagtctggtggtgtaaccttgggaccttggactgtg |
38964100 |
T |
|
| Q |
677 |
ctcatctcaaggtttcaagttcaagtttgaatcctcctaatgccaatttttgtgggctagttcatacaaaactttgctctagctttaaataggatcctaa |
776 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
38964101 |
ctcatctcaaggtttcaagttcaagtttgaatcctcctaatgccaatttttgtgggctagttcatacagaactttgctctagctttaaatagggtcctaa |
38964200 |
T |
|
| Q |
777 |
gtagacggtaggattggtcctcccagattagtaggtccctaggtcggataccgtgttttaaa |
838 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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|
| T |
38964201 |
gtagacggtaggattggtcctcccagattagtaggtccctaggccggagaccgtgttttaaa |
38964262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 873 - 1053
Target Start/End: Original strand, 38964311 - 38964507
Alignment:
| Q |
873 |
ttgatatttgtttaattgttgttgattagaaattaatatagat-agatagatatag-agtgccaacggaagttggttcagttggtc-agag-tgacacgt |
968 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
38964311 |
ttgatatttgtttaattgttgttgattagaaattaatatagataagatagatatagaagtgccaacggaagttggttcagttggtcaagagttgacacgt |
38964410 |
T |
|
| Q |
969 |
aaaccaca--ggtgc-aagttcaactccggctgt--gcgtgag--acttgt--gggggtgatttgtaaatacgtag--ta-tgctctctgtctgtct |
1053 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||| |
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| T |
38964411 |
aaaccacaagggtgcaaagttcaactccggctgttggcgtgaggaccttgttggggggtgatttgtaaatacgtaggttagtgctctctgtctgtct |
38964507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 631 - 697
Target Start/End: Complemental strand, 22269006 - 22268940
Alignment:
| Q |
631 |
ccacatgggttagtctggtggtgtaaccttgggaccttggactgtgctcatctcaaggtttcaagtt |
697 |
Q |
| |
|
|||| |||||| | |||||||||| |||||||||||||| ||||||| ||||||||| ||||||| |
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|
| T |
22269006 |
ccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcttctcaaggtctcaagtt |
22268940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 631 - 766
Target Start/End: Original strand, 37046988 - 37047117
Alignment:
| Q |
631 |
ccacatgggttagtctggtggtgtaaccttgggaccttggactgtgctcatctcaaggtttcaagttcaagtttgaatcctcctaatgccaatttttgtg |
730 |
Q |
| |
|
|||| |||||| |||||||||||| |||||||||||||| ||||||| ||||||||| ||| |||||| ||| ||| | | |||||| ||| |
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| T |
37046988 |
ccacttgggttggtctggtggtgttggcttgggaccttggagtgtgctcctctcaaggt------ctcaggtttgattccccctggtacaaattttggtg |
37047081 |
T |
|
| Q |
731 |
ggctagttcatacaaaactttgctctagctttaaat |
766 |
Q |
| |
|
||||||| |||||| | ||||||||||||||||||| |
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|
| T |
37047082 |
ggctagtccatacagagctttgctctagctttaaat |
37047117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 649 - 735
Target Start/End: Original strand, 14326680 - 14326767
Alignment:
| Q |
649 |
tggtgtaaccttgggaccttggactgtgctcatctcaaggtttcaagt-tcaagtttgaatcctcctaatgccaatttttgtgggcta |
735 |
Q |
| |
|
||||||| ||| |||||||||| |||||| ||||||||| || | | ||||||| |||||||||| ||||||| |||||||||||| |
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|
| T |
14326680 |
tggtgtagactttggaccttggagcgtgctcctctcaaggtctcgactctcaagttcgaatcctcctgatgccaacttttgtgggcta |
14326767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 720 - 771
Target Start/End: Original strand, 35797541 - 35797592
Alignment:
| Q |
720 |
caatttttgtgggctagttcatacaaaactttgctctagctttaaataggat |
771 |
Q |
| |
|
||||||| |||||| |||||||||||||||||| | | |||||||||||||| |
|
|
| T |
35797541 |
caattttggtgggcaagttcatacaaaactttggtttggctttaaataggat |
35797592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 697 - 766
Target Start/End: Original strand, 16510285 - 16510354
Alignment:
| Q |
697 |
tcaagtttgaatcctcctaatgccaatttttgtgggctagttcatacaaaactttgctctagctttaaat |
766 |
Q |
| |
|
||||||| ||||||| | |||||||||| ||||||||||| |||||||| | |||||| ||||||||| |
|
|
| T |
16510285 |
tcaagttcgaatccttcctatgccaatttctgtgggctagtccatacaaagcaatgctctggctttaaat |
16510354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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