View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4390-Insertion-3 (Length: 1065)

Name: NF4390-Insertion-3
Description: NF4390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4390-Insertion-3
NF4390-Insertion-3
[»] chr2 (8 HSPs)
chr2 (8-380)||(40927543-40927898)
chr2 (510-798)||(40927230-40927497)
chr2 (650-907)||(9612443-9612700)
chr2 (812-907)||(37440439-37440534)
chr2 (969-1039)||(32270724-32270797)
chr2 (914-963)||(32271361-32271410)
chr2 (831-907)||(27410110-27410186)
chr2 (400-448)||(40927485-40927530)
[»] chr1 (9 HSPs)
chr1 (455-713)||(48506486-48506741)
chr1 (8-142)||(48505965-48506099)
chr1 (833-908)||(6165518-6165593)
chr1 (830-907)||(46545099-46545176)
chr1 (812-907)||(2620001-2620096)
chr1 (835-891)||(19025094-19025150)
chr1 (914-963)||(31141965-31142014)
chr1 (812-876)||(13120230-13120294)
chr1 (860-907)||(25080316-25080363)
[»] chr7 (13 HSPs)
chr7 (812-907)||(21496766-21496861)
chr7 (833-907)||(15964181-15964255)
chr7 (914-963)||(32089282-32089331)
chr7 (914-963)||(32096755-32096804)
chr7 (914-963)||(39128509-39128558)
chr7 (914-963)||(39478487-39478536)
chr7 (914-963)||(41706646-41706695)
chr7 (914-963)||(41812191-41812240)
chr7 (831-907)||(29915717-29915793)
chr7 (844-907)||(21688780-21688843)
chr7 (914-963)||(32087927-32087976)
chr7 (914-963)||(32093039-32093088)
chr7 (725-798)||(29915610-29915683)
[»] chr6 (6 HSPs)
chr6 (833-907)||(32089838-32089912)
chr6 (724-907)||(31393192-31393376)
chr6 (812-907)||(31895014-31895109)
chr6 (832-906)||(21279682-21279756)
chr6 (914-963)||(26217251-26217300)
chr6 (831-882)||(31202372-31202423)
[»] scaffold0259 (1 HSPs)
scaffold0259 (812-907)||(7182-7277)
[»] chr4 (12 HSPs)
chr4 (812-907)||(29515257-29515352)
chr4 (846-907)||(17523412-17523473)
chr4 (834-907)||(52627366-52627439)
chr4 (817-907)||(4986334-4986424)
chr4 (812-907)||(26095287-26095378)
chr4 (831-907)||(31978536-31978612)
chr4 (827-898)||(11907430-11907501)
chr4 (844-907)||(36892236-36892299)
chr4 (856-907)||(1937838-1937889)
chr4 (856-907)||(4889926-4889977)
chr4 (829-907)||(18196263-18196341)
chr4 (732-798)||(31978646-31978712)
[»] chr3 (7 HSPs)
chr3 (724-907)||(41073340-41073523)
chr3 (844-907)||(35092200-35092263)
chr3 (914-963)||(38044538-38044587)
chr3 (914-963)||(48838017-48838066)
chr3 (914-963)||(50152384-50152433)
chr3 (914-963)||(50904016-50904065)
chr3 (835-887)||(11193429-11193481)
[»] chr5 (3 HSPs)
chr5 (833-907)||(19288066-19288140)
chr5 (852-907)||(17528472-17528527)
chr5 (833-903)||(22962836-22962906)
[»] scaffold0169 (1 HSPs)
scaffold0169 (834-907)||(27481-27554)
[»] chr8 (7 HSPs)
chr8 (914-963)||(21634823-21634872)
chr8 (838-898)||(22014011-22014071)
chr8 (812-908)||(41378396-41378492)
chr8 (773-907)||(37095776-37095910)
chr8 (847-907)||(18887706-18887766)
chr8 (833-876)||(6731781-6731824)
chr8 (914-963)||(5515544-5515593)
[»] scaffold0002 (1 HSPs)
scaffold0002 (829-907)||(284705-284783)


Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 380
Target Start/End: Complemental strand, 40927898 - 40927543
Alignment:
Q  8 cccttttgcttaaattacaacctaatttaagaaactcacctcaacagatccctcaagaatgaacacgagccctttactccttcaccaagctccaaacctt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40927898 cccttttgcttaaattacaacctaatttaagaaactcacctcaaaagatccctcaagaatgaacacgagccctttactccttcaccaagctccaaacctt 40927799  T
Q  108 cattcttttgccattaactcctgcttcaacacgagctcaaaccatctactttgtcatgtaaacgattgagaaaacgactgagatgaagcatggtttaaca 207  Q
    ||||||| ||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40927798 cattcttctgccatttactccttcttcaacacgagctcaaacaatctactttgtcatgtaaacgattaagaaaacgactgagatgaagcatggtttaaca 40927699  T
Q  208 gaaaacgagagagaggatcaactgagatgcttgagcgatttaaccaaaaacgagatgaagggaaaatgattgaaaaggaaggacgatctcagataaaatg 307  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||                 |||||||||||||| |    
T  40927698 gaaaacgagagagaggatcaactgagatgcttgagtgatttaaccaaaaatgagatgaagggaaaat-----------------gatctcagataaaaag 40927616  T
Q  308 ggaaaacgagatgaagaacaacggagatgcttctacacgagccctttacccagatttgtgttttgtttctttt 380  Q
    | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40927615 gaaaaacgagatgaagaacaacggagatgcttttacacgagccctttacccagatttgtgttttgtttctttt 40927543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 510 - 798
Target Start/End: Complemental strand, 40927497 - 40927230
Alignment:
Q  510 tgtgttttttgaaatactgtcggaattagtgaattactagcggattctaaattcataggattactggcagattttaatgggtactggcggattgtttatt 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||| ||||||||||||||||||||||||||||    
T  40927497 tgtgttttttgaaatactgtcggaattagtgaattactagcggattctaaattcat----------gcagactttaatgggtactggcggattgtttatt 40927408  T
Q  610 ttattactaacagatttcatccgccaataatacgatgccatgtgcagctgtcatgcaccatcattattgacggaaatgatccgttagtgatgcaagggag 709  Q
      | |||| |||||||||||         |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||    
T  40927407 --actactgacagatttcat---------atacgatgccatgtgcagctgttatgcaccatcattattgacggaaatgatccgtcagtaatgcaagggag 40927319  T
Q  710 atttgtcaaagactttactgaaggatttatccgtcaataacataattatctgtattatcgagggattattccgtcaataatgttattga 798  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||    
T  40927318 atttgtcaaagactttactgaaggatttatccgtcaataacgtaattatctgtattatcgaaggattatttcgtcaataatgttattga 40927230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 650 - 907
Target Start/End: Complemental strand, 9612700 - 9612443
Alignment:
Q  650 tgtgcagctgtcatgcaccatcattattgacggaaatgatccgttagtgatgcaagggagatttgtcaaagactttactgaaggatttatccgtcaataa 749  Q
    |||||||||||| | ||||||||||||||||||||   |||||| ||| |  ||||||||||| ||||| ||||||||||  |||||||||||||| |||    
T  9612700 tgtgcagctgtcctacaccatcattattgacggaacaaatccgtcagtaacacaagggagattcgtcaatgactttactggcggatttatccgtcagtaa 9612601  T
Q  750 cataattatctgtattatcgagggattattccgtcaataatgttattgaaggcnnnnnnnnggttagtgaaggcttttttcgccagtaattacagagggt 849  Q
    || | ||||||||| ||| ||||| ||||||||||| |||||||||||| ||         | ||| |||||||||| | || |||||||||| || |||    
T  9612600 cagatttatctgtactattgagggtttattccgtcagtaatgttattgagggatttttcttgtttattgaaggctttctccgtcagtaattactgacggt 9612501  T
Q  850 ctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
     ||||||||||| |||||||||||| | ||||||| ||||||||||||||||||||||    
T  9612500 ttaaatccctcactaatgcaattttaaattggttagtaatttggagaattcttgtagt 9612443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 812 - 907
Target Start/End: Complemental strand, 37440534 - 37440439
Alignment:
Q  812 gttagtgaaggcttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    |||| |||||| || || || |||||||||| |||||||||||||||| |||||||||||||||| ||||||| ||| |||  |||||||||||||    
T  37440534 gttactgaaggtttattccgtcagtaattaccgagggtctaaatccctaagtaatgcaattttgaattggttagtaaattgaggaattcttgtagt 37440439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 969 - 1039
Target Start/End: Complemental strand, 32270797 - 32270724
Alignment:
Q  969 tatcatatcattctctcttatcttt--atctttt-aggtgtatataccctcatataggggtatatcaaacatct 1039  Q
    ||||||||||||||||||||||| |  ||||||| |||||||||||| |||| ||||| |||||||||||||||    
T  32270797 tatcatatcattctctcttatctattaatctttttaggtgtatatacactcagataggcgtatatcaaacatct 32270724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 914 - 963
Target Start/End: Complemental strand, 32271410 - 32271361
Alignment:
Q  914 acgatatagagaagattatcatggcccctacgcaaggatgacacgcacaa 963  Q
    |||||| | |||||||||||||||||||| ||||||||||||||||||||    
T  32271410 acgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaa 32271361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 831 - 907
Target Start/End: Original strand, 27410110 - 27410186
Alignment:
Q  831 gccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    |||||||||||| ||||||||| ||||||||||||| ||||||| ||||||| | ||||   | |||||||||||||    
T  27410110 gccagtaattactgagggtctagatccctcagtaattcaattttaagttggtcactaataaagggaattcttgtagt 27410186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 400 - 448
Target Start/End: Complemental strand, 40927530 - 40927485
Alignment:
Q  400 acattagatgtgtgtttctggatagctcctccttattttgttttttgaa 448  Q
    ||||||||||||||||||||||||||   |||||||| |||||||||||    
T  40927530 acattagatgtgtgtttctggatagc---tccttattgtgttttttgaa 40927485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 455 - 713
Target Start/End: Original strand, 48506486 - 48506741
Alignment:
Q  455 attataacttgaactaataattggatactggcggaattaaagaatcaccggcggatgtgttttttgaaatactgtcggaattagtgaattactagcggat 554  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48506486 attataacttgaactaataattgggtactggcggaattaaagaatcaccggcggatgtgttttttgaaataccgtcggaattagtgaattactagcggat 48506585  T
Q  555 tctaaattcataggattactggcagattttaatgggtactggcggattgtttattttattactaacagatttcatccgccaataatacgatgccatgtgc 654  Q
    ||| |||||| | |||||||||| || ||||||||||||||||| ||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||    
T  48506586 tcttaattcaca-gattactggccgactttaatgggtactggcgaattgttta--ttattactgacagatttcatccgccagtaatacgatgccatgtgc 48506682  T
Q  655 agctgtcatgcaccatcattattgacggaaatgatccgttagtgatgcaagggagattt 713  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||    
T  48506683 agctgtcatgcaccatcattattgacggaaatgatccgtcagtgatgtaagagagattt 48506741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 48505965 - 48506099
Alignment:
Q  8 cccttttgcttaaattacaacctaatttaagaaactcacctcaacagatccctcaagaatgaacacgagccctttactccttcaccaagctccaaacctt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48505965 cccttttgcttaaattacaacctaatttaagaaactcacctcaacagatccctcaagaatgaacacgagccctttactccttcaccaagctccaaacctt 48506064  T
Q  108 cattcttttgccattaactcctgcttcaacacgag 142  Q
    ||||||||||||||| |||||| ||||||||||||    
T  48506065 cattcttttgccatttactccttcttcaacacgag 48506099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 833 - 908
Target Start/End: Original strand, 6165518 - 6165593
Alignment:
Q  833 cagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagtt 908  Q
    |||||||||| ||||| |||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  6165518 cagtaattactgagggcctaaatccctcagtgatgcaattttgaattggttagtaatttggagaattcttgtagtt 6165593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 830 - 907
Target Start/End: Complemental strand, 46545176 - 46545099
Alignment:
Q  830 cgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| |||  |||||||||||||    
T  46545176 cgccagtaaatacagagggtctaaatccctcagtaatgcaattttgaattggttagtaaattgaggaattcttgtagt 46545099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 812 - 907
Target Start/End: Complemental strand, 2620096 - 2620001
Alignment:
Q  812 gttagtgaaggcttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    |||| |||||| || || ||||||||||||| |||||||||||||||||| ||||||||| |||  ||||||| ||  |||| |||||||||||||    
T  2620096 gttattgaaggtttattccgccagtaattactgagggtctaaatccctcaataatgcaatattggattggttagtatattggggaattcttgtagt 2620001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 835 - 891
Target Start/End: Complemental strand, 19025150 - 19025094
Alignment:
Q  835 gtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataattt 891  Q
    |||||||  |||| |||||||||||||||||||||||||||||||||||| ||||||    
T  19025150 gtaattattgaggatctaaatccctcagtaatgcaattttgagttggttagtaattt 19025094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 914 - 963
Target Start/End: Complemental strand, 31142014 - 31141965
Alignment:
Q  914 acgatatagagaagattatcatggcccctacgcaaggatgacacgcacaa 963  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  31142014 acgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaa 31141965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 812 - 876
Target Start/End: Complemental strand, 13120294 - 13120230
Alignment:
Q  812 gttagtgaaggcttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttga 876  Q
    |||| |||||| || || ||||||||||||| ||||||||||||||||||   ||||||||||||    
T  13120294 gttattgaaggtttattccgccagtaattactgagggtctaaatccctcatgtatgcaattttga 13120230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 860 - 907
Target Start/End: Original strand, 25080316 - 25080363
Alignment:
Q  860 cagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    ||||||||||||||||  ||||||| ||||||||||| ||||||||||    
T  25080316 cagtaatgcaattttggattggttagtaatttggagacttcttgtagt 25080363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 812 - 907
Target Start/End: Original strand, 21496766 - 21496861
Alignment:
Q  812 gttagtgaaggcttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    |||| |||||| || || ||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  21496766 gttattgaaggtttattccgccagtaattattgagggtctaaatccctcagtaatgcaattttgagttggttactaatttagagaattcttgtagt 21496861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 833 - 907
Target Start/End: Complemental strand, 15964255 - 15964181
Alignment:
Q  833 cagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    |||||||||  |||||||||||||||| |||||||||||||||| ||||||| ||| |||| |||||||||||||    
T  15964255 cagtaattaatgagggtctaaatccctaagtaatgcaattttgaattggttagtaaattggggaattcttgtagt 15964181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 914 - 963
Target Start/End: Complemental strand, 32089331 - 32089282
Alignment:
Q  914 acgatatagagaagattatcatggcccctacgcaaggatgacacgcacaa 963  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  32089331 acgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaa 32089282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 914 - 963
Target Start/End: Complemental strand, 32096804 - 32096755
Alignment:
Q  914 acgatatagagaagattatcatggcccctacgcaaggatgacacgcacaa 963  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  32096804 acgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaa 32096755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 914 - 963
Target Start/End: Complemental strand, 39128558 - 39128509
Alignment:
Q  914 acgatatagagaagattatcatggcccctacgcaaggatgacacgcacaa 963  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  39128558 acgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaa 39128509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 914 - 963
Target Start/End: Original strand, 39478487 - 39478536
Alignment:
Q  914 acgatatagagaagattatcatggcccctacgcaaggatgacacgcacaa 963  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  39478487 acgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaa 39478536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 914 - 963
Target Start/End: Complemental strand, 41706695 - 41706646
Alignment:
Q  914 acgatatagagaagattatcatggcccctacgcaaggatgacacgcacaa 963  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  41706695 acgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaa 41706646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 914 - 963
Target Start/End: Original strand, 41812191 - 41812240
Alignment:
Q  914 acgatatagagaagattatcatggcccctacgcaaggatgacacgcacaa 963  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  41812191 acgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaa 41812240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 831 - 907
Target Start/End: Original strand, 29915717 - 29915793
Alignment:
Q  831 gccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    |||||||||||| ||||||||| ||||||||||||| ||||||| ||||||| | ||||   | |||||||||||||    
T  29915717 gccagtaattactgagggtctagatccctcagtaattcaattttaagttggtcactaataaagggaattcttgtagt 29915793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 844 - 907
Target Start/End: Original strand, 21688780 - 21688843
Alignment:
Q  844 gagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    |||||| ||||| |||||||||||||||||||| ||||||| |||||||   ||||||||||||    
T  21688780 gagggtttaaatgcctcagtaatgcaattttgaattggttagtaatttgagaaattcttgtagt 21688843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 914 - 963
Target Start/End: Complemental strand, 32087976 - 32087927
Alignment:
Q  914 acgatatagagaagattatcatggcccctacgcaaggatgacacgcacaa 963  Q
    |||||| ||||||||||| |||||||||| | ||||||||||||||||||    
T  32087976 acgatacagagaagattaacatggcccctgcacaaggatgacacgcacaa 32087927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 914 - 963
Target Start/End: Complemental strand, 32093088 - 32093039
Alignment:
Q  914 acgatatagagaagattatcatggcccctacgcaaggatgacacgcacaa 963  Q
    |||||| ||||||||||| ||||||||||  |||||||||||||||||||    
T  32093088 acgatacagagaagattagcatggcccctgtgcaaggatgacacgcacaa 32093039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 725 - 798
Target Start/End: Original strand, 29915610 - 29915683
Alignment:
Q  725 tactgaaggatttatccgtcaataacataattatctgtattatcgagggattattccgtcaataatgttattga 798  Q
    |||||| |||||||||||||| |||  |||| | ||  ||||| ||||| ||||||||||| ||||||||||||    
T  29915610 tactgatggatttatccgtcagtaatgtaatcaactaaattattgagggtttattccgtcagtaatgttattga 29915683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 2e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 833 - 907
Target Start/End: Complemental strand, 32089912 - 32089838
Alignment:
Q  833 cagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    ||||||| || |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32089912 cagtaatcactgaggatctaaatccctcagtaatgcaattttgagttggttagtaatttggagaattcttgtagt 32089838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 724 - 907
Target Start/End: Original strand, 31393192 - 31393376
Alignment:
Q  724 ttactgaaggatttatccgtcaataacataattatctgtattatcgagggattattccgtcaataatgttattgaaggcnnnnnnnng-gttagtgaagg 822  Q
    ||||||| |||||||||||||| |||  ||| | |||| ||||| |||||||| |||||||| ||| ||||||| |||           |||| ||||||    
T  31393192 ttactgacggatttatccgtcagtaatgtaactctctgaattattgagggattgttccgtcagtaacgttattgtagggttttttgaatgttattgaagg 31393291  T
Q  823 cttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
     || || ||||||||||||| |||||||||||||||||||||||||||| |||  ||||||| ||  |||| |||||||||||||    
T  31393292 tttattccgccagtaattactgagggtctaaatccctcagtaatgcaatattggattggttagtatattggggaattcttgtagt 31393376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 812 - 907
Target Start/End: Complemental strand, 31895109 - 31895014
Alignment:
Q  812 gttagtgaaggcttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    |||| |||||| || || || |||||||||| |||||||||||||||||| |||||||||||||| ||||||  ||| |||  |||||||||||||    
T  31895109 gttactgaagggttattccgtcagtaattactgagggtctaaatccctcaataatgcaattttgaattggttggtaaattgatgaattcttgtagt 31895014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 832 - 906
Target Start/End: Original strand, 21279682 - 21279756
Alignment:
Q  832 ccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtag 906  Q
    ||||||||||| |||||||||||||||||||||||| |||||||| ||| ||| ||| || | ||||||||||||    
T  21279682 ccagtaattactgagggtctaaatccctcagtaatgtaattttgaattgattagtaaatttgggaattcttgtag 21279756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 914 - 963
Target Start/End: Complemental strand, 26217300 - 26217251
Alignment:
Q  914 acgatatagagaagattatcatggcccctacgcaaggatgacacgcacaa 963  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  26217300 acgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaa 26217251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 831 - 882
Target Start/End: Complemental strand, 31202423 - 31202372
Alignment:
Q  831 gccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggt 882  Q
    ||||||||||||  ||||||||||||| |||||||||||||||||| |||||    
T  31202423 gccagtaattactaagggtctaaatccgtcagtaatgcaattttgatttggt 31202372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 812 - 907
Target Start/End: Complemental strand, 7277 - 7182
Alignment:
Q  812 gttagtgaaggcttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    |||| |||||| || || ||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||  |||| |||||||||||||    
T  7277 gttattgaaggtttattccgccagtaattactgagagtctaaatccctcagtaatgcaattttgaattggttaatatattggggaattcttgtagt 7182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 3e-20; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 812 - 907
Target Start/End: Original strand, 29515257 - 29515352
Alignment:
Q  812 gttagtgaaggcttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    |||| |||||| || || ||||||||||||| |||||||||||||||||||||||| |||||||| ||||||| ||| |||  |||||||||||||    
T  29515257 gttattgaaggtttattccgccagtaattactgagggtctaaatccctcagtaatgtaattttgaattggttagtaaattgaggaattcttgtagt 29515352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 846 - 907
Target Start/End: Original strand, 17523412 - 17523473
Alignment:
Q  846 gggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    |||||||||||||||||||||| |||||||| ||||||| |||||||  |||||||||||||    
T  17523412 gggtctaaatccctcagtaatgtaattttgatttggttagtaatttgaggaattcttgtagt 17523473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 834 - 907
Target Start/End: Complemental strand, 52627439 - 52627366
Alignment:
Q  834 agtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| ||||||| ||| | || |||||||| ||||    
T  52627439 agtaattactgagggtctaaatccctcggtaatgcaattttgaattggttagtaaataggggaattcttatagt 52627366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 817 - 907
Target Start/End: Complemental strand, 4986424 - 4986334
Alignment:
Q  817 tgaaggcttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    |||||| || || ||||||||||||   ||||||||||||||||| |||||  ||||||| ||||||| ||| |||| |||||||||||||    
T  4986424 tgaaggtttattccgccagtaattattaagggtctaaatccctcactaatgtcattttgaattggttagtaaattggggaattcttgtagt 4986334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 812 - 907
Target Start/End: Original strand, 26095287 - 26095378
Alignment:
Q  812 gttagtgaaggcttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    |||| |||||| || || ||| |||||||||||||||||||||||    |||||||||||||||| ||||||| ||  |||| |||||||||||||    
T  26095287 gttactgaaggtttattccgctagtaattacagagggtctaaatc----agtaatgcaattttgaattggttagtagattggggaattcttgtagt 26095378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 831 - 907
Target Start/End: Complemental strand, 31978612 - 31978536
Alignment:
Q  831 gccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    |||||||||||| ||||||||| ||||||||||||| ||||||| ||||||| | ||||   | |||||||||||||    
T  31978612 gccagtaattactgagggtctagatccctcagtaattcaattttaagttggtcactaataaagggaattcttgtagt 31978536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 827 - 898
Target Start/End: Complemental strand, 11907501 - 11907430
Alignment:
Q  827 tttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaat 898  Q
    ||||| |||||||||| || ||||||||| | | |||||||||||||||| ||||||| |||||||| ||||    
T  11907501 tttcgtcagtaattactgatggtctaaattcttgagtaatgcaattttgaattggttagtaatttggggaat 11907430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 844 - 907
Target Start/End: Complemental strand, 36892299 - 36892236
Alignment:
Q  844 gagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    |||||||||||| ||||||||||| |||||||| |||||||  ||||||  |||||||||||||    
T  36892299 gagggtctaaattcctcagtaatgtaattttgatttggttagaaatttgaggaattcttgtagt 36892236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 856 - 907
Target Start/End: Original strand, 1937838 - 1937889
Alignment:
Q  856 ccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    ||||||||||||||||||| | ||||||| ||| |||| |||||||||||||    
T  1937838 ccctcagtaatgcaattttaaattggttagtaaattggggaattcttgtagt 1937889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 856 - 907
Target Start/End: Original strand, 4889926 - 4889977
Alignment:
Q  856 ccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    |||| |||||||||||||||| ||||||| ||| |||| |||||||||||||    
T  4889926 cccttagtaatgcaattttgaattggttagtaaattggggaattcttgtagt 4889977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 829 - 907
Target Start/End: Original strand, 18196263 - 18196341
Alignment:
Q  829 tcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    |||||| ||||||  ||||||  ||| || |||||||||||||||| | ||||||| |||||||  |||||||||||||    
T  18196263 tcgccaataattaatgagggttcaaacccgtcagtaatgcaattttcaattggttactaatttgatgaattcttgtagt 18196341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 732 - 798
Target Start/End: Complemental strand, 31978712 - 31978646
Alignment:
Q  732 ggatttatccgtcaataacataattatctgtattatcgagggattattccgtcaataatgttattga 798  Q
    |||||||||||||| |||  |||| | ||| ||||| ||||| ||||||||||| ||||||||||||    
T  31978712 ggatttatccgtcagtaatgtaatcaactgaattattgagggtttattccgtcagtaatgttattga 31978646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 3e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 724 - 907
Target Start/End: Complemental strand, 41073523 - 41073340
Alignment:
Q  724 ttactgaaggatttatccgtcaataacataattatctgtattatcgagggattattccgtcaataatgttattgaaggcnnnnnnnnggttagtgaaggc 823  Q
    ||||||| |||||||||||||| |||  ||| | |||| ||||| |||||||| |||||||| ||| |||||||| ||          |||| ||||||     
T  41073523 ttactgacggatttatccgtcagtaatgtaactctctgaattattgagggattgttccgtcagtaacgttattgagggttttttgaatgttattgaaggt 41073424  T
Q  824 ttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    || || ||||||||||||| ||||||||||||||| |||||||||||| |||  ||||||| ||  |||| |||||||||||||    
T  41073423 ttattccgccagtaattactgagggtctaaatcccacagtaatgcaatattggattggttagtatattggggaattcttgtagt 41073340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 844 - 907
Target Start/End: Original strand, 35092200 - 35092263
Alignment:
Q  844 gagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    ||||||||||||||||| ||||||||||||||| ||||||| ||| ||||  ||||||||||||    
T  35092200 gagggtctaaatccctcggtaatgcaattttgaattggttagtaaattgggaaattcttgtagt 35092263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 914 - 963
Target Start/End: Complemental strand, 38044587 - 38044538
Alignment:
Q  914 acgatatagagaagattatcatggcccctacgcaaggatgacacgcacaa 963  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  38044587 acgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaa 38044538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 914 - 963
Target Start/End: Original strand, 48838017 - 48838066
Alignment:
Q  914 acgatatagagaagattatcatggcccctacgcaaggatgacacgcacaa 963  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  48838017 acgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaa 48838066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 914 - 963
Target Start/End: Original strand, 50152384 - 50152433
Alignment:
Q  914 acgatatagagaagattatcatggcccctacgcaaggatgacacgcacaa 963  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  50152384 acgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaa 50152433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 914 - 963
Target Start/End: Original strand, 50904016 - 50904065
Alignment:
Q  914 acgatatagagaagattatcatggcccctacgcaaggatgacacgcacaa 963  Q
    |||||| ||||||||||| || ||||||| ||||||||||||||||||||    
T  50904016 acgatacagagaagattagcaaggcccctgcgcaaggatgacacgcacaa 50904065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 835 - 887
Target Start/End: Complemental strand, 11193481 - 11193429
Alignment:
Q  835 gtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaata 887  Q
    |||||||| ||||||||||||| ||| ||||| ||||||||| ||||||||||    
T  11193481 gtaattactgagggtctaaatctctcggtaatacaattttgaattggttaata 11193429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 833 - 907
Target Start/End: Original strand, 19288066 - 19288140
Alignment:
Q  833 cagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    |||||||||| |||||||||||||||||||||||| |||||||| ||| ||| ||| | |  |||||||||||||    
T  19288066 cagtaattactgagggtctaaatccctcagtaatgtaattttgaattgattagtaaatagaggaattcttgtagt 19288140  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 852 - 907
Target Start/End: Original strand, 17528472 - 17528527
Alignment:
Q  852 aaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    ||||||||||||||||||||||||| ||||||| ||| |||| ||||||| |||||    
T  17528472 aaatccctcagtaatgcaattttgaattggttagtaaattggggaattctggtagt 17528527  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 833 - 903
Target Start/End: Complemental strand, 22962906 - 22962836
Alignment:
Q  833 cagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttg 903  Q
    |||||||||  || ||| |||||| |||| |||||||||||||| || |||| ||||||||||||||||||    
T  22962906 cagtaattattgaaggtttaaatctctcattaatgcaattttgaattagttagtaatttggagaattcttg 22962836  T

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Target: scaffold0169 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 834 - 907
Target Start/End: Complemental strand, 27554 - 27481
Alignment:
Q  834 agtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    ||||||||| || ||||| ||| |||||||||||||||||||| ||||||| ||| | || |||||||||||||    
T  27554 agtaattactgatggtctgaattcctcagtaatgcaattttgaattggttagtaaataggggaattcttgtagt 27481  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 914 - 963
Target Start/End: Complemental strand, 21634872 - 21634823
Alignment:
Q  914 acgatatagagaagattatcatggcccctacgcaaggatgacacgcacaa 963  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  21634872 acgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaa 21634823  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 838 - 898
Target Start/End: Complemental strand, 22014071 - 22014011
Alignment:
Q  838 attacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaat 898  Q
    ||||| ||||| ||||||||||||||||| ||||||||| ||||||| |||||||| ||||    
T  22014071 attactgagggcctaaatccctcagtaattcaattttgaattggttagtaatttggggaat 22014011  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 812 - 908
Target Start/End: Complemental strand, 41378492 - 41378396
Alignment:
Q  812 gttagtgaaggcttttttcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagtt 908  Q
    |||| |||||| || || ||||||||||||  |||||||||||| ||| |||||| ||||||||| ||||||||||  |||  |||||||| |||||    
T  41378492 gttattgaaggtttattccgccagtaattattgagggtctaaattccttagtaatacaattttgaattggttaatatattgaggaattcttctagtt 41378396  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 773 - 907
Target Start/End: Original strand, 37095776 - 37095910
Alignment:
Q  773 gattattccgtcaataatgttattgaaggcnnnnnnnnggttagtgaaggcttttttcgccagtaattacagagggtctaaatccctcagtaatgcaatt 872  Q
    |||||||||||||||||||||||||| |||         |||| ||| || || |  ||||||||||||| || || ||||||||| ||||||||||||     
T  37095776 gattattccgtcaataatgttattgagggctttttctacgttactgagggtttataccgccagtaattactgaaggcctaaatcccccagtaatgcaatc 37095875  T
Q  873 ttgagttggttaataatttggagaattcttgtagt 907  Q
    |||| ||  || |||||| || |||||||||||||    
T  37095876 ttgaattccttgataattaggggaattcttgtagt 37095910  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 847 - 907
Target Start/End: Original strand, 18887706 - 18887766
Alignment:
Q  847 ggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    ||||||||||||| |||||||||||||||| ||||||| ||| | ||  ||||||||||||    
T  18887706 ggtctaaatccctaagtaatgcaattttgaattggttagtaaatcgggaaattcttgtagt 18887766  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 833 - 876
Target Start/End: Original strand, 6731781 - 6731824
Alignment:
Q  833 cagtaattacagagggtctaaatccctcagtaatgcaattttga 876  Q
    |||||||||| |||||||||||||| ||||||||| ||||||||    
T  6731781 cagtaattactgagggtctaaatccgtcagtaatgtaattttga 6731824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 914 - 963
Target Start/End: Original strand, 5515544 - 5515593
Alignment:
Q  914 acgatatagagaagattatcatggcccctacgcaaggatgacacgcacaa 963  Q
    |||||| ||||||||||| |||||||| | ||||| ||||||||||||||    
T  5515544 acgatacagagaagattagcatggcccttgcgcaaagatgacacgcacaa 5515593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 829 - 907
Target Start/End: Complemental strand, 284783 - 284705
Alignment:
Q  829 tcgccagtaattacagagggtctaaatccctcagtaatgcaattttgagttggttaataatttggagaattcttgtagt 907  Q
    |||||| ||||||  ||||||  ||| || |||||||||||||||| | ||||||| |||||||  |||||||||||||    
T  284783 tcgccaataattaatgagggttcaaacccgtcagtaatgcaattttcaattggttactaatttgatgaattcttgtagt 284705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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