View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4390-Insertion-4 (Length: 535)
Name: NF4390-Insertion-4
Description: NF4390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4390-Insertion-4 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 8 - 461
Target Start/End: Complemental strand, 32991535 - 32991087
Alignment:
| Q |
8 |
ggaacatgacaaataatacagtttttcagtcccgtgacatgttgttcttctttttgtgaatttttatatataaaaagagtatggtaatgactgactcata |
107 |
Q |
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| T |
32991535 |
ggaacatgacaaataatacagtttttcagtcccgtgacatgttgttcttctttttgtgaatttttatatataaaaagagtatggtaatgactgactcata |
32991436 |
T |
|
| Q |
108 |
taacaggtcagaaactagtactaccattgtggtttagaactgttgattgagattaacatctgaaattctatttataaggac-aagattgtgttactttta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| |
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| T |
32991435 |
taacaggtcagaaactagtactaccattgtggtttagagctgttgattgagattaacatctgaaattctattgataaagacaaagattgtgttactttta |
32991336 |
T |
|
| Q |
207 |
ctctaactacttattctttttatttcaatatgtgtggtaaaaacaaatcattcattaattaccnnnnnnnnnnnnnnnnctttctaggatgataatctta |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
32991335 |
ctctaactacttattctttttatttcaatatgtgtggtaaaaacaaatcattcattaattac-------ttttttttttctttctaggataataatctta |
32991243 |
T |
|
| Q |
307 |
gcaagagaatgcaagctctttaacac-cattttttgattggttcaaatttgcatggatcttnnnnnnnnnttatgtgactcgtagattttgatgagactc |
405 |
Q |
| |
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|||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||| |
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| T |
32991242 |
gcaagagaatacaagctctttaacacacattctttgattggttcaaatttgcatgggtcttaacaaatttttatgtgactcgtaaattttgatgagactc |
32991143 |
T |
|
| Q |
406 |
gtataaatgttaacccgtccaagatatatagtgtgtcagaaaattggtattaaaga |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32991142 |
gtataaatgttaacccgtccaagatatatagtgtgtcagaaaattggtattaaaga |
32991087 |
T |
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