View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4390_high_2 (Length: 567)

Name: NF4390_high_2
Description: NF4390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4390_high_2
NF4390_high_2
[»] chr2 (13 HSPs)
chr2 (14-447)||(30390860-30391296)
chr2 (149-439)||(30381519-30381817)
chr2 (220-386)||(30480664-30480830)
chr2 (230-386)||(30427921-30428077)
chr2 (461-547)||(30391352-30391438)
chr2 (230-326)||(30421728-30421824)
chr2 (211-323)||(30472751-30472863)
chr2 (230-386)||(30465724-30465880)
chr2 (229-408)||(8382052-8382231)
chr2 (230-399)||(23766049-23766218)
chr2 (230-399)||(23785514-23785683)
chr2 (230-323)||(30434448-30434541)
chr2 (230-297)||(23788779-23788846)
[»] chr5 (1 HSPs)
chr5 (152-408)||(41631686-41631951)


Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 14 - 447
Target Start/End: Original strand, 30390860 - 30391296
Alignment:
Q  14 gaacaaaagtatgacatagaaagtcgtgtaggatatcatagttttagccgcccaaattctataaaaatctatggttcttatttcatgtattcacacttgt 113  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30390860 gaacaaaagtataacatagaaagtcgtgtaggacatcatagttttagccacccaaattctataaaaatctatggttcttatttcatgtattcacacttgt 30390959  T
Q  114 acttccttttatttcatt---acattctatacactttgcttcaccaattacaaacagagaaatggaatgggtttcaggcataattctcatcattggtttg 210  Q
    ||||||||||||||||||   ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30390960 acttccttttatttcattgttacattctgtacactttgcttcaccaattacaaacagagaaatggaatgggtttcaggcataattctcatcattggtttg 30391059  T
Q  211 atatggtcttggaaggtgctgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttt 310  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  30391060 atatggtcttggaaggtgctgaatttgttatggttgaagccaaagaagctagagaagctcttaagagaacaaggacttaaagggaatcaatataggcttt 30391159  T
Q  311 tagttggagacatgaaggagtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtcattccctacta 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  30391160 tagttggagacatgaaggagtattttaacatggaaaaggaagccaaatccaaatctatgaacctctccgatgatatcacgccacgtgtcattccctacta 30391259  T
Q  411 caatgaaagtgttagaattcatggtatgtatactgtt 447  Q
    ||||||||||||||||||||||||||||| |||||||    
T  30391260 caatgaaagtgttagaattcatggtatgtgtactgtt 30391296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 149 - 439
Target Start/End: Original strand, 30381519 - 30381817
Alignment:
Q  149 cttcaccaattacaaacagagaaatggaatgggtttcaggcataattctcatcattg---------gtttgatatggtcttggaaggtgctgaattggtt 239  Q
    ||||||||||||||||| ||||| ||||||||||||| || ||||||||||||||||         ||||||||||| | ||||||||| ||| || |||    
T  30381519 cttcaccaattacaaactgagaa-tggaatgggtttctgggataattctcatcattgtaacacttggtttgatatgggcatggaaggtgttgagtttgtt 30381617  T
Q  240 atggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaaggagtattttaac 339  Q
     ||| ||| |||||||||||||||||||||||||| |||||||||  || |||| ||| |||||||| ||||  |||| ||||| || ||   ||||||     
T  30381618 gtggctgaggccaaagaagctagagaagctcttaagagaacaaggctttcaaggaaattcatataggattttgcttggggacataaaagatctttttaag 30381717  T
Q  340 atggaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtcattccctactacaatgaaagtgttagaattcatggtatgt 439  Q
    |||||||| ||||||||||| ||||| ||||||||||| |||||||| || |||||||| |||||||||  | |  | ||||||| ||||||||||||||    
T  30381718 atggaaaaagaagccaaatcaaaatccatgaatctctccgatgatataacaccacgtgtaattccctacatccaacatagtgttaaaattcatggtatgt 30381817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 220 - 386
Target Start/End: Original strand, 30480664 - 30480830
Alignment:
Q  220 tggaaggtgctgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggag 319  Q
    |||||| |||||| ||||| |||||||||||||||||||||||| |   |  ||| ||||||||| |||||||||||||| |||||| ||||||||||||    
T  30480664 tggaagatgctgatttggtcatggttgaagccaaagaagctagaaagagtgctaagagaacaaggtcttaaagggaatccttataggtttttagttggag 30480763  T
Q  320 acatgaaggagtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatat 386  Q
    |||||||||||||||| || ||||||||||||| || ||||||| |  ||||||||||||| |||||    
T  30480764 acatgaaggagtatttaaagatggaaaaggaagtcagatccaaacccttgaatctctcggacgatat 30480830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 230 - 386
Target Start/End: Original strand, 30427921 - 30428077
Alignment:
Q  230 tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaagga 329  Q
    |||||||||||||||||||||||||||||||||||||  || ||| |||||||||||| ||||||||| |||||||||||||||||||||||||||| ||    
T  30427921 tgaattggttatggttgaagccaaagaagctagagaaattcctaagagaacaaggactaaaagggaattcatataggcttttagttggagacatgaatga 30428020  T
Q  330 gtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatat 386  Q
       | |||| |||  ||||||||| | ||| ||| |||||||||| || ||||||||    
T  30428021 tcttcttaagatgagaaaggaagcaacatctaaacctatgaatctttctgatgatat 30428077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 461 - 547
Target Start/End: Original strand, 30391352 - 30391438
Alignment:
Q  461 atgaatatatgttatttgactccattgtttaatgaaattaatatatttgaaatcattcacttagaaattagttcagttcagataaaa 547  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  30391352 atgaatatatgttatttgactcaattgtttaatgaaatgaatatatttgaaatcattcatttagaaattagttcagttcagataaaa 30391438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 230 - 326
Target Start/End: Original strand, 30421728 - 30421824
Alignment:
Q  230 tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaa 326  Q
    |||||||||||||||||||||||||||||||||||||  || ||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  30421728 tgaattggttatggttgaagccaaagaagctagagaaattcctaagagaacaaggactaaaagggaattcatataggcttttagttggagacatgaa 30421824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 211 - 323
Target Start/End: Original strand, 30472751 - 30472863
Alignment:
Q  211 atatggtcttggaaggtgctgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttt 310  Q
    |||||| | |||||| | ||||||||||||||||||||||||||||||||||||||  |  ||| |||||||||||| ||||||||| ||||||||||||    
T  30472751 atatgggcatggaagattctgaattggttatggttgaagccaaagaagctagagaaatttctaagagaacaaggactaaaagggaattcatataggcttt 30472850  T
Q  311 tagttggagacat 323  Q
    |||||||||||||    
T  30472851 tagttggagacat 30472863  T

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Target: chr2; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 230 - 386
Target Start/End: Original strand, 30465724 - 30465880
Alignment:
Q  230 tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaagga 329  Q
    ||||||||||||||||||||||||| |||||||| ||| |  ||| |||||||||||| ||||| ||| |||||||||||||||||||||||||||| ||    
T  30465724 tgaattggttatggttgaagccaaaaaagctagaaaagttgctaagagaacaaggactaaaaggaaattcatataggcttttagttggagacatgaatga 30465823  T
Q  330 gtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatat 386  Q
       | |||| |||  ||||||||| | ||| ||| |||||||||| || ||||||||    
T  30465824 tcttcttaagatgagaaaggaagcaacatctaaacctatgaatctttctgatgatat 30465880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 229 - 408
Target Start/End: Complemental strand, 8382231 - 8382052
Alignment:
Q  229 ctgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaagg 328  Q
    ||||||||| | |||||||||||||||| ||||||||||||||||  ||||||||||  ||| || ||| | ||||| ||| |  |||| ||| ||||||    
T  8382231 ctgaattggatttggttgaagccaaagaggctagagaagctcttacgagaacaaggatgtaatggaaattcttatagacttgtgcttggggacttgaagg 8382132  T
Q  329 agtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtcattccctac 408  Q
    | |  | ||| |||| |||| |||||||||||||| | ||| | || ||||||||||| |  || |||||||||||||||    
T  8382131 attcatataagatgggaaagaaagccaaatccaaacccatggaactgtcggatgatataatccctcgtgtcattccctac 8382052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 399
Target Start/End: Original strand, 23766049 - 23766218
Alignment:
Q  230 tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaagga 329  Q
    |||||||| | ||| |||||||||||||| | |||||||| |||| ||||||||| ||| ||||||| || ||||| |||||  |||||||    |||||    
T  23766049 tgaattggatgtggctgaagccaaagaagatggagaagcttttaagagaacaaggccttcaagggaacccttatagacttttgcttggagatgcaaagga 23766148  T
Q  330 gtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtc 399  Q
     ||||||   ||| ||||| |||   |||||||| | |||||||| |||||||||||  |||||||||||    
T  23766149 ttattttgtaatgcaaaagaaagttcaatccaaacccatgaatctgtcggatgatattgcgccacgtgtc 23766218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 399
Target Start/End: Complemental strand, 23785683 - 23785514
Alignment:
Q  230 tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaagga 329  Q
    |||||||| | ||| |||||||||||||| |||||||||| |||| ||||||||| ||| ||||||| || ||||| |||||  |||||||    |||||    
T  23785683 tgaattggatgtggctgaagccaaagaagatagagaagcttttaagagaacaaggccttcaagggaacccttatagacttttgcttggagatgcaaagga 23785584  T
Q  330 gtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtc 399  Q
     ||||||   ||| ||||| |||   |||||||| | |||||||| || ||||||||  |||||||||||    
T  23785583 ttattttgtgatgcaaaagaaagttcaatccaaacccatgaatctatctgatgatattgcgccacgtgtc 23785514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 323
Target Start/End: Original strand, 30434448 - 30434541
Alignment:
Q  230 tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacat 323  Q
    |||||||| |||||||||||||||| |||||||| ||     | | |||||||||||||||||| ||| |||| || |||||||||||||||||    
T  30434448 tgaattggatatggttgaagccaaaaaagctagaaaaagagctcagagaacaaggacttaaaggaaattcatacagacttttagttggagacat 30434541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 23788779 - 23788846
Alignment:
Q  230 tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaat 297  Q
    |||||||| | ||| |||||||||||||| |||||||||| |||| ||||||||| |||  |||||||    
T  23788779 tgaattggatgtggctgaagccaaagaagatagagaagcttttaagagaacaaggccttcgagggaat 23788846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 152 - 408
Target Start/End: Complemental strand, 41631951 - 41631686
Alignment:
Q  152 caccaattacaaacagagaaatggaatgggtttcaggcataattctcatcattg---------gtttgatatggtcttggaaggtgctgaattggttatg 242  Q
    ||||||||||||| ||| |||||||||||  |||| ||||||||| ||||||||         ||||||||||| | |||| | | ||||||||||| ||    
T  41631951 caccaattacaaagagataaatggaatggtattcaagcataattcccatcattgtgacagttggtttgatatgggcatggaggatactgaattggttgtg 41631852  T
Q  243 gttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaaggagtattttaacatg 342  Q
    ||| | |||||||||||||||||| || |||| ||||||||| ||| ||||||||||||||||| ||||   ||||||||| |||||   | |||| |||    
T  41631851 gttaaggccaaagaagctagagaaactgttaagagaacaaggtcttcaagggaatccatataggattttgtatggagacataaaggatcttcttaagatg 41631752  T
Q  343 gaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtcattccctac 408  Q
    ||||||||||| |  || ||||| ||||||||| | |||||||| | ||||||||| |||||||||    
T  41631751 gaaaaggaagctaggtctaaatccatgaatctcaccgatgatataatgccacgtgtaattccctac 41631686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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