View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4390_high_3 (Length: 372)
Name: NF4390_high_3
Description: NF4390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4390_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 7266860 - 7267217
Alignment:
| Q |
1 |
ttctgtcctagccccacctatgatgcaatatgtagtggttctggtttacctgctcctggaccttatcaaaacagtgtataactgatttgcttaaaaggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7266860 |
ttctgtcctagccccacctatgatgcaatatgtagtggttctggtttacctgctcctggaccttatcaaaacagtgtataactgatttgcttaaaaggat |
7266959 |
T |
|
| Q |
101 |
ttgattccaaatactagtttaagttaaagggtcaagtgcagtgcaacgttgtaacatttgttcaaaggctgagattgtaatacatttgttcatgtttatg |
200 |
Q |
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| T |
7266960 |
ttgattccaaatactagtttaagttaaagggtcaagtgcagtgcaacgttgtaacatttgttcaaagactgagattgtaatacatttgttcatgtttatg |
7267059 |
T |
|
| Q |
201 |
acaaagtatgaagtgggtaaaatatgtttccttgattttgaatgtaacagacactgcacttttacacacttcattttgaagctaatctttatcacattat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7267060 |
acaaagtatgaagtgggtaaaatatgtttccttgattttgaatgtaacagacactgcacttttacacacttcattttgaagctaatctttatcacattat |
7267159 |
T |
|
| Q |
301 |
ctaatttaccatgtcttttatcatattaccatatggtctaatgatattaatttccatc |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7267160 |
ctaatttaccatgtcttttatcatattaccatatggtctaatgatattaattttcatc |
7267217 |
T |
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