View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4390_high_5 (Length: 319)
Name: NF4390_high_5
Description: NF4390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4390_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 3854067 - 3854276
Alignment:
| Q |
1 |
tgttgtgatgttttgacagatgaattgataggactgtgctggagccttcagatggccagtgatagtaaggtgtttacttgaattggatgcttgtgaaatt |
100 |
Q |
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| T |
3854067 |
tgttgtgatgttttgacagatgaattgataggattgtgctggagccttcagatggccagtgatagtaaggtgtttacttgaattggatgcttgtgaaatt |
3854166 |
T |
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| Q |
101 |
cgctcagttcgctgctatcattatcaattttttctgccttcggactttgtaatagaggttggtcctctcaatatagagatgtgattttttctgaaatcct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3854167 |
cgctcagttcgctgctatcattatcaattttttctgccttcggactttgtaatagaggttggtcctctcaatatagagatgtgatttttgctgaaatcct |
3854266 |
T |
|
| Q |
201 |
taacgtgatt |
210 |
Q |
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||| |||||| |
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| T |
3854267 |
taatgtgatt |
3854276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 179 - 305
Target Start/End: Original strand, 3854269 - 3854395
Alignment:
| Q |
179 |
atgtgattttttctgaaatccttaacgtgattaatattgtatggtacagctgcaacctacagaggtttgatggtaaaaccatgtcttggcaaacagcagc |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3854269 |
atgtgattttttctgaaatccttaacgtgattaatattgtatggtacagctgcaatctacagaggtttgatggtaaaaccatgtcttggcaaacagcagc |
3854368 |
T |
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| Q |
279 |
cagcaagattatctcgactgttttctt |
305 |
Q |
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||||||||||||||||||||||||||| |
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| T |
3854369 |
cagcaagattatctcgactgttttctt |
3854395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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