View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4390_low_1 (Length: 737)
Name: NF4390_low_1
Description: NF4390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4390_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 11 - 421
Target Start/End: Complemental strand, 33600428 - 33600018
Alignment:
| Q |
11 |
gaacctgtgagtaaagcacataagttgcatcatttcttgatcaatccttcaaatccttccaaattcagaactcttgaagatgtggacgcaaattgcgtta |
110 |
Q |
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| T |
33600428 |
gaacctatgagtaaagcacataagttgcatcatttcttgatcaatccttcaaatccttccaaattcagaactcttgaagatgtggacgcaaattgcgtta |
33600329 |
T |
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| Q |
111 |
caccagaacttgatgcttgggagcaacaggaccaaattgttttgtcttggctccaatctactatcaagaaggagatgcttatgtgtattactgggtgaaa |
210 |
Q |
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| T |
33600328 |
cgccagaacttgatgcttgggagcaacaggaccaaattgttttgtcttggctccaatctactatcaagaaggagatgcttatgtgtattactgggtgaaa |
33600229 |
T |
|
| Q |
211 |
gcactcttaaatactttgggataaagttcatgcatactttcagcaacatagtcatgccaaactctgccagctttgttctgatttgtgaagcaccgtgctt |
310 |
Q |
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| T |
33600228 |
gcactcttaaatactttgggataaagttcatgcatactttcagcaacatagtcatgccaaactctgccagctttgttctgatttgtgaagcaccgtgctt |
33600129 |
T |
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| Q |
311 |
gaaacctggaagaattctgtatctgaatttctcttaaaaattcagtctttgattagttcaatcaatgctaccgcgagtcaatttctgctcgtgagcacct |
410 |
Q |
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| T |
33600128 |
gaaacctagaagaattctgtatctgaatttctcttaaaaattcagtctttgattagttcaatcaatgctaccgagagtcaatttctgctcgtgagcacct |
33600029 |
T |
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| Q |
411 |
agacgtatttc |
421 |
Q |
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| T |
33600028 |
agacgtatttc |
33600018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 592 - 681
Target Start/End: Original strand, 33579549 - 33579641
Alignment:
| Q |
592 |
cagtatatgaccataactaaactaaaagttcgatatgtt---aataaagtgtgccagtttgtggctcaaaccctgcagagtcactcaattgca |
681 |
Q |
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| T |
33579549 |
cagtatgtgaccataactagactagaaattggatatgttgttaataaagtgtgccagtttgtgtctcaaaccctgcagaatcactcaattgca |
33579641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 453 - 704
Target Start/End: Complemental strand, 10543164 - 10542913
Alignment:
| Q |
453 |
aatgttgtctttgctctaaaatagcagccatggcctctaccattggtttctcttccnnnnnnnnaggaatcctaagtcgtctcagttttca--gagtaca |
550 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||| ||||| | | |||||||||||| ||||||||| | ||||||| |
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| T |
10543164 |
aatgttgtctttgctctaaaatagcag----ggcctctaccaatggtatctctaactttttcctacgaatcctaagtcatctcagtttgctttgagtaca |
10543069 |
T |
|
| Q |
551 |
tagatattctagccacctggaggtccatagttcaagcacaacagtatatgaccataactaaactaaaagttcgatat---gttaataaagtgtgccagtt |
647 |
Q |
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| T |
10543068 |
tagaagatttagccacctgcaggtccatagttaatgcaccacagtatgtgaccattactagactagaaattggatatactgtta-taaagtgtgccaatt |
10542970 |
T |
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| Q |
648 |
tgtggctcaaaccctgcagagtcactcaattgcagtcaagctagttttgagatatct |
704 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||| |
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| T |
10542969 |
tgtggctcaaaccctgcagagtcactgaattgctgtcaagctaattttgagatatct |
10542913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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