View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4390_low_2 (Length: 567)
Name: NF4390_low_2
Description: NF4390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4390_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 14 - 447
Target Start/End: Original strand, 30390860 - 30391296
Alignment:
Q |
14 |
gaacaaaagtatgacatagaaagtcgtgtaggatatcatagttttagccgcccaaattctataaaaatctatggttcttatttcatgtattcacacttgt |
113 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
30390860 |
gaacaaaagtataacatagaaagtcgtgtaggacatcatagttttagccacccaaattctataaaaatctatggttcttatttcatgtattcacacttgt |
30390959 |
T |
|
Q |
114 |
acttccttttatttcatt---acattctatacactttgcttcaccaattacaaacagagaaatggaatgggtttcaggcataattctcatcattggtttg |
210 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
30390960 |
acttccttttatttcattgttacattctgtacactttgcttcaccaattacaaacagagaaatggaatgggtttcaggcataattctcatcattggtttg |
30391059 |
T |
|
Q |
211 |
atatggtcttggaaggtgctgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttt |
310 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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T |
30391060 |
atatggtcttggaaggtgctgaatttgttatggttgaagccaaagaagctagagaagctcttaagagaacaaggacttaaagggaatcaatataggcttt |
30391159 |
T |
|
Q |
311 |
tagttggagacatgaaggagtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtcattccctacta |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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T |
30391160 |
tagttggagacatgaaggagtattttaacatggaaaaggaagccaaatccaaatctatgaacctctccgatgatatcacgccacgtgtcattccctacta |
30391259 |
T |
|
Q |
411 |
caatgaaagtgttagaattcatggtatgtatactgtt |
447 |
Q |
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T |
30391260 |
caatgaaagtgttagaattcatggtatgtgtactgtt |
30391296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 149 - 439
Target Start/End: Original strand, 30381519 - 30381817
Alignment:
Q |
149 |
cttcaccaattacaaacagagaaatggaatgggtttcaggcataattctcatcattg---------gtttgatatggtcttggaaggtgctgaattggtt |
239 |
Q |
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||||||||||||||||| ||||| ||||||||||||| || |||||||||||||||| ||||||||||| | ||||||||| ||| || ||| |
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T |
30381519 |
cttcaccaattacaaactgagaa-tggaatgggtttctgggataattctcatcattgtaacacttggtttgatatgggcatggaaggtgttgagtttgtt |
30381617 |
T |
|
Q |
240 |
atggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaaggagtattttaac |
339 |
Q |
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||| ||| |||||||||||||||||||||||||| ||||||||| || |||| ||| |||||||| |||| |||| ||||| || || |||||| |
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T |
30381618 |
gtggctgaggccaaagaagctagagaagctcttaagagaacaaggctttcaaggaaattcatataggattttgcttggggacataaaagatctttttaag |
30381717 |
T |
|
Q |
340 |
atggaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtcattccctactacaatgaaagtgttagaattcatggtatgt |
439 |
Q |
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|||||||| ||||||||||| ||||| ||||||||||| |||||||| || |||||||| ||||||||| | | | ||||||| |||||||||||||| |
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T |
30381718 |
atggaaaaagaagccaaatcaaaatccatgaatctctccgatgatataacaccacgtgtaattccctacatccaacatagtgttaaaattcatggtatgt |
30381817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 220 - 386
Target Start/End: Original strand, 30480664 - 30480830
Alignment:
Q |
220 |
tggaaggtgctgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggag |
319 |
Q |
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|||||| |||||| ||||| |||||||||||||||||||||||| | | ||| ||||||||| |||||||||||||| |||||| |||||||||||| |
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T |
30480664 |
tggaagatgctgatttggtcatggttgaagccaaagaagctagaaagagtgctaagagaacaaggtcttaaagggaatccttataggtttttagttggag |
30480763 |
T |
|
Q |
320 |
acatgaaggagtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatat |
386 |
Q |
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|||||||||||||||| || ||||||||||||| || ||||||| | ||||||||||||| ||||| |
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T |
30480764 |
acatgaaggagtatttaaagatggaaaaggaagtcagatccaaacccttgaatctctcggacgatat |
30480830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 230 - 386
Target Start/End: Original strand, 30427921 - 30428077
Alignment:
Q |
230 |
tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaagga |
329 |
Q |
|
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||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| ||||||||| |||||||||||||||||||||||||||| || |
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T |
30427921 |
tgaattggttatggttgaagccaaagaagctagagaaattcctaagagaacaaggactaaaagggaattcatataggcttttagttggagacatgaatga |
30428020 |
T |
|
Q |
330 |
gtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatat |
386 |
Q |
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T |
30428021 |
tcttcttaagatgagaaaggaagcaacatctaaacctatgaatctttctgatgatat |
30428077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 461 - 547
Target Start/End: Original strand, 30391352 - 30391438
Alignment:
Q |
461 |
atgaatatatgttatttgactccattgtttaatgaaattaatatatttgaaatcattcacttagaaattagttcagttcagataaaa |
547 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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T |
30391352 |
atgaatatatgttatttgactcaattgtttaatgaaatgaatatatttgaaatcattcatttagaaattagttcagttcagataaaa |
30391438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 230 - 326
Target Start/End: Original strand, 30421728 - 30421824
Alignment:
Q |
230 |
tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaa |
326 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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T |
30421728 |
tgaattggttatggttgaagccaaagaagctagagaaattcctaagagaacaaggactaaaagggaattcatataggcttttagttggagacatgaa |
30421824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 211 - 323
Target Start/End: Original strand, 30472751 - 30472863
Alignment:
Q |
211 |
atatggtcttggaaggtgctgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttt |
310 |
Q |
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|||||| | |||||| | |||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| ||||||||| |||||||||||| |
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T |
30472751 |
atatgggcatggaagattctgaattggttatggttgaagccaaagaagctagagaaatttctaagagaacaaggactaaaagggaattcatataggcttt |
30472850 |
T |
|
Q |
311 |
tagttggagacat |
323 |
Q |
|
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||||||||||||| |
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|
T |
30472851 |
tagttggagacat |
30472863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 230 - 386
Target Start/End: Original strand, 30465724 - 30465880
Alignment:
Q |
230 |
tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaagga |
329 |
Q |
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||||||||||||||||||||||||| |||||||| ||| | ||| |||||||||||| ||||| ||| |||||||||||||||||||||||||||| || |
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T |
30465724 |
tgaattggttatggttgaagccaaaaaagctagaaaagttgctaagagaacaaggactaaaaggaaattcatataggcttttagttggagacatgaatga |
30465823 |
T |
|
Q |
330 |
gtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatat |
386 |
Q |
|
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| |||| ||| ||||||||| | ||| ||| |||||||||| || |||||||| |
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|
T |
30465824 |
tcttcttaagatgagaaaggaagcaacatctaaacctatgaatctttctgatgatat |
30465880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 229 - 408
Target Start/End: Complemental strand, 8382231 - 8382052
Alignment:
Q |
229 |
ctgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaagg |
328 |
Q |
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||||||||| | |||||||||||||||| |||||||||||||||| |||||||||| ||| || ||| | ||||| ||| | |||| ||| |||||| |
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T |
8382231 |
ctgaattggatttggttgaagccaaagaggctagagaagctcttacgagaacaaggatgtaatggaaattcttatagacttgtgcttggggacttgaagg |
8382132 |
T |
|
Q |
329 |
agtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtcattccctac |
408 |
Q |
|
|
| | | ||| |||| |||| |||||||||||||| | ||| | || ||||||||||| | || ||||||||||||||| |
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|
T |
8382131 |
attcatataagatgggaaagaaagccaaatccaaacccatggaactgtcggatgatataatccctcgtgtcattccctac |
8382052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 399
Target Start/End: Original strand, 23766049 - 23766218
Alignment:
Q |
230 |
tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaagga |
329 |
Q |
|
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|||||||| | ||| |||||||||||||| | |||||||| |||| ||||||||| ||| ||||||| || ||||| ||||| ||||||| ||||| |
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T |
23766049 |
tgaattggatgtggctgaagccaaagaagatggagaagcttttaagagaacaaggccttcaagggaacccttatagacttttgcttggagatgcaaagga |
23766148 |
T |
|
Q |
330 |
gtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtc |
399 |
Q |
|
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|||||| ||| ||||| ||| |||||||| | |||||||| ||||||||||| ||||||||||| |
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|
T |
23766149 |
ttattttgtaatgcaaaagaaagttcaatccaaacccatgaatctgtcggatgatattgcgccacgtgtc |
23766218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 399
Target Start/End: Complemental strand, 23785683 - 23785514
Alignment:
Q |
230 |
tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaagga |
329 |
Q |
|
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|||||||| | ||| |||||||||||||| |||||||||| |||| ||||||||| ||| ||||||| || ||||| ||||| ||||||| ||||| |
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T |
23785683 |
tgaattggatgtggctgaagccaaagaagatagagaagcttttaagagaacaaggccttcaagggaacccttatagacttttgcttggagatgcaaagga |
23785584 |
T |
|
Q |
330 |
gtattttaacatggaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtc |
399 |
Q |
|
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|||||| ||| ||||| ||| |||||||| | |||||||| || |||||||| ||||||||||| |
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T |
23785583 |
ttattttgtgatgcaaaagaaagttcaatccaaacccatgaatctatctgatgatattgcgccacgtgtc |
23785514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 323
Target Start/End: Original strand, 30434448 - 30434541
Alignment:
Q |
230 |
tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacat |
323 |
Q |
|
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|||||||| |||||||||||||||| |||||||| || | | |||||||||||||||||| ||| |||| || ||||||||||||||||| |
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T |
30434448 |
tgaattggatatggttgaagccaaaaaagctagaaaaagagctcagagaacaaggacttaaaggaaattcatacagacttttagttggagacat |
30434541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 23788779 - 23788846
Alignment:
Q |
230 |
tgaattggttatggttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaat |
297 |
Q |
|
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|||||||| | ||| |||||||||||||| |||||||||| |||| ||||||||| ||| ||||||| |
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|
T |
23788779 |
tgaattggatgtggctgaagccaaagaagatagagaagcttttaagagaacaaggccttcgagggaat |
23788846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 152 - 408
Target Start/End: Complemental strand, 41631951 - 41631686
Alignment:
Q |
152 |
caccaattacaaacagagaaatggaatgggtttcaggcataattctcatcattg---------gtttgatatggtcttggaaggtgctgaattggttatg |
242 |
Q |
|
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||||||||||||| ||| ||||||||||| |||| ||||||||| |||||||| ||||||||||| | |||| | | ||||||||||| || |
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|
T |
41631951 |
caccaattacaaagagataaatggaatggtattcaagcataattcccatcattgtgacagttggtttgatatgggcatggaggatactgaattggttgtg |
41631852 |
T |
|
Q |
243 |
gttgaagccaaagaagctagagaagctcttaaaagaacaaggacttaaagggaatccatataggcttttagttggagacatgaaggagtattttaacatg |
342 |
Q |
|
|
||| | |||||||||||||||||| || |||| ||||||||| ||| ||||||||||||||||| |||| ||||||||| ||||| | |||| ||| |
|
|
T |
41631851 |
gttaaggccaaagaagctagagaaactgttaagagaacaaggtcttcaagggaatccatataggattttgtatggagacataaaggatcttcttaagatg |
41631752 |
T |
|
Q |
343 |
gaaaaggaagccaaatccaaatctatgaatctctcggatgatatcacgccacgtgtcattccctac |
408 |
Q |
|
|
||||||||||| | || ||||| ||||||||| | |||||||| | ||||||||| ||||||||| |
|
|
T |
41631751 |
gaaaaggaagctaggtctaaatccatgaatctcaccgatgatataatgccacgtgtaattccctac |
41631686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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