View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4390_low_3 (Length: 372)
Name: NF4390_low_3
Description: NF4390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4390_low_3 |
| |
|
Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 7266860 - 7267217
Alignment:
Q |
1 |
ttctgtcctagccccacctatgatgcaatatgtagtggttctggtttacctgctcctggaccttatcaaaacagtgtataactgatttgcttaaaaggat |
100 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
7266860 |
ttctgtcctagccccacctatgatgcaatatgtagtggttctggtttacctgctcctggaccttatcaaaacagtgtataactgatttgcttaaaaggat |
7266959 |
T |
|
Q |
101 |
ttgattccaaatactagtttaagttaaagggtcaagtgcagtgcaacgttgtaacatttgttcaaaggctgagattgtaatacatttgttcatgtttatg |
200 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
T |
7266960 |
ttgattccaaatactagtttaagttaaagggtcaagtgcagtgcaacgttgtaacatttgttcaaagactgagattgtaatacatttgttcatgtttatg |
7267059 |
T |
|
Q |
201 |
acaaagtatgaagtgggtaaaatatgtttccttgattttgaatgtaacagacactgcacttttacacacttcattttgaagctaatctttatcacattat |
300 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
7267060 |
acaaagtatgaagtgggtaaaatatgtttccttgattttgaatgtaacagacactgcacttttacacacttcattttgaagctaatctttatcacattat |
7267159 |
T |
|
Q |
301 |
ctaatttaccatgtcttttatcatattaccatatggtctaatgatattaatttccatc |
358 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
T |
7267160 |
ctaatttaccatgtcttttatcatattaccatatggtctaatgatattaattttcatc |
7267217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 550 times since January 2019
Visitors: 5757