View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4407-Insertion-1 (Length: 885)

Name: NF4407-Insertion-1
Description: NF4407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4407-Insertion-1
NF4407-Insertion-1
[»] chr1 (5 HSPs)
chr1 (8-884)||(5053660-5054536)
chr1 (485-624)||(46446005-46446147)
chr1 (485-814)||(46672020-46672361)
chr1 (724-814)||(46445806-46445896)
chr1 (419-448)||(46446193-46446222)
[»] chr8 (9 HSPs)
chr8 (484-813)||(9841800-9842135)
chr8 (473-821)||(9860438-9860787)
chr8 (325-452)||(9860829-9860956)
chr8 (325-452)||(9842188-9842315)
chr8 (724-770)||(9902793-9902839)
chr8 (728-811)||(9846852-9846935)
chr8 (325-447)||(9903122-9903244)
chr8 (545-634)||(27360973-27361062)
chr8 (484-583)||(9847066-9847165)
[»] chr5 (12 HSPs)
chr5 (491-812)||(39572169-39572499)
chr5 (715-812)||(39576175-39576272)
chr5 (324-452)||(39576559-39576687)
chr5 (484-624)||(225362-225502)
chr5 (472-688)||(4146454-4146673)
chr5 (491-624)||(39576372-39576505)
chr5 (538-645)||(2326337-2326444)
chr5 (561-642)||(4100463-4100544)
chr5 (724-810)||(2326523-2326609)
chr5 (724-812)||(3561698-3561786)
chr5 (545-685)||(3561513-3561653)
chr5 (397-447)||(3561339-3561389)
[»] chr3 (5 HSPs)
chr3 (728-818)||(7256648-7256738)
chr3 (351-452)||(7257009-7257110)
chr3 (735-811)||(49385960-49386036)
chr3 (561-624)||(7256845-7256908)
chr3 (724-795)||(49385853-49385925)
[»] scaffold0658 (1 HSPs)
scaffold0658 (545-634)||(2835-2924)
[»] chr6 (2 HSPs)
chr6 (736-812)||(112829-112905)
chr6 (558-600)||(112636-112678)


Alignment Details
Target: chr1 (Bit Score: 733; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 733; E-Value: 0
Query Start/End: Original strand, 8 - 884
Target Start/End: Original strand, 5053660 - 5054536
Alignment:
Q  8 cgattaacaagacaataagttacaaag--cacagtcaatggcatgaaaaatgagcttataatttaattcaaaactacaactgcttcgtgcgtgatcatca 105  Q
    |||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||    
T  5053660 cgattaacgagacaataagttacaaagaacacagtcaatggcatgaaaaatgagcttataattcaattcaaaactacatctgcttcgtgtgtgatcatca 5053759  T
Q  106 ttaaggggtcaagagacaaaatttgtataaataattagcagacattcaccaagtgttttcaaatcaaatttggataaataaattaattaagtcaaaccct 205  Q
    ||||||||||||||  |||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5053760 ttaaggggtcaaga--caaaaactgtataaataattagcagacattcaccaagtgtttccaaatcaaatttggataaataaattaattaagtcaaaccct 5053857  T
Q  206 ttatgcataaaacttcaccttttatttggccatatcaatc-taaataattaaatagaaacataaataattgtttaattgttatgcctaactaagacaaat 304  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5053858 ttaagcataaaacttcaccttttatttggccatatcaatcgtaaataattaaatagaaacataaataattgtttaattgttatgcctaactaagacaaat 5053957  T
Q  305 ataagtaataccaggaaatctagctatgtcggagtacttggaaatgaaactaaactgttaacgtgaggccatacctcaaaattgcccatggtaatgccct 404  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5053958 ataagtaataccaggaaacctagctatgtcggagtacttggaaatgaaactaaactgttgacgtgaggccatacctcaaaattgcccatggtaatgccct 5054057  T
Q  405 caatctttgtcaaatgtttggtcttgacattgtaaccaaaatgtatgtgtttgatgtctcttccaagtagagatactttaaagatgatttgatcgttgat 504  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5054058 cgatctttgtcaaatgtttggtcttgacattgtaaccaaaatgtatgtgtttgatgtctcttccaagtagagatactttaaagatgatttgatcgttgat 5054157  T
Q  505 ccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggtcccatctcatgataatgagaccattttcccgta 604  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5054158 ccacaaacgaaataccacatacaaagtatcaagctcatgaccgcaagcagcaacataatcaaaaggtcccatctcatgataatgagaccattttcccgta 5054257  T
Q  605 tcaaaatccaaaatgtagatctgaaatgttgtataaaaatctttatgcgcaatacaacaaaagcgatttcccatccataaaaatcttgcaacatgtagaa 704  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5054258 tcaaaatccaaaatatagatctgaaatgttgtataaaaatctttatgcgcaatacaagaaaagcgatttcccatccataaaaatcttgcaacatgtagaa 5054357  T
Q  705 tcgttatagagggaaataaatattctcgtacaataatttccttgtcaacatccatcacaatcactttatcatttgttatccaataaagatccttgcctcc 804  Q
    ||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5054358 tcgttgtaga--gaaataaatattctcgtacaataatttccttgtcaacatccatcacaatcactttatcatttgttatccaataaagatcattgcctcc 5054455  T
Q  805 actataaagtatttgccgagaaaaattcccttgaatgggagc-nnnnnnnnnagctatctcgttccacgagttatctattc 884  Q
    ||||||||||||||||||| ||||||||||||||| ||||||          |||||||||||||||||||||||||||||    
T  5054456 actataaagtatttgccgaaaaaaattcccttgaaggggagcttttttttctagctatctcgttccacgagttatctattc 5054536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 485 - 624
Target Start/End: Complemental strand, 46446147 - 46446005
Alignment:
Q  485 aagatgatttgatcgttgatccacaaacgaaataccac---atacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggtcccatctcat 581  Q
    ||||||||||||||||||| ||| ||||||||||||||   | ||||| ||| |||||||||||| || ||||| |||||||||||| ||||||||||||    
T  46446147 aagatgatttgatcgttgacccaaaaacgaaataccaccgaagacaaattattaagctcatgaccacaggcagccacataatcaaaatgtcccatctcat 46446048  T
Q  582 gataatgagaccattttcccgtatcaaaatccaaaatgtagat 624  Q
    ||||| |||||||||  |||| |||||||||||||||||||||    
T  46446047 gataaagagaccattcccccgaatcaaaatccaaaatgtagat 46446005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 485 - 814
Target Start/End: Original strand, 46672020 - 46672361
Alignment:
Q  485 aagatgatttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaa---gcagcaacataatcaaaaggtcccatctcat 581  Q
    ||||| |||| ||||||||||||||| | ||||||||   | ||||| ||||||| |||||| |||   ||||| |||||||||||| |||||||| |||    
T  46672020 aagataatttaatcgttgatccacaagcaaaataccaacgaaaaaatttcaagcttatgaccacaacaagcagccacataatcaaaatgtcccatcgcat 46672119  T
Q  582 gataatgagaccattttcccgtatcaaaatccaaaatgtagatctgaaatgttgtataaa---aatctttatgcgcaatacaacaaaagcgatttcccat 678  Q
    ||||  ||||||||||||| | ||||||||||||||||||||| ||| ||| |  || ||    |||||| | | |||| ||| ||| | ||||||||||    
T  46672120 gatagagagaccattttcctgaatcaaaatccaaaatgtagatttgatatgcttcattaattttatctttgtacacaatgcaagaaaggtgatttcccat 46672219  T
Q  679 ccat-aaaaatcttg--------caacatgtagaatcgttatagagggaaataaatattctcgtacaataatttccttgtcaacatccatcacaatcact 769  Q
    | || |||||||| |        ||||||   | |||   |||| ||||| |  |||||||| ||||||||||||  | ||||||||||||||||| |||    
T  46672220 caataaaaaatctggaactttaccaacat---gcatcagcatagtgggaagtggatattctcatacaataatttctctatcaacatccatcacaattact 46672316  T
Q  770 ttatcatttgttatccaataaagatccttgcctccactataaagt 814  Q
    | |||||||||||| || |||||||| ||||||||||||||||||    
T  46672317 tcatcatttgttattcagtaaagatcattgcctccactataaagt 46672361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 724 - 814
Target Start/End: Complemental strand, 46445896 - 46445806
Alignment:
Q  724 atattctcgtacaataatttccttgtcaacatccatcacaatcactttatcatttgttatccaataaagatccttgcctccactataaagt 814  Q
    |||||||  ||||||||||||  | ||||||||||| ||||| |  | |||| |||||||||| |||||||| ||||||||||||||||||    
T  46445896 atattcttctacaataatttctctatcaacatccattacaattatatcatcaattgttatccagtaaagatcattgcctccactataaagt 46445806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 448
Target Start/End: Complemental strand, 46446222 - 46446193
Alignment:
Q  419 tgtttggtcttgacattgtaaccaaaatgt 448  Q
    ||||||||||||||||||||||||||||||    
T  46446222 tgtttggtcttgacattgtaaccaaaatgt 46446193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 4e-59; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 484 - 813
Target Start/End: Complemental strand, 9842135 - 9841800
Alignment:
Q  484 aaagatgatttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggtcccatctcatga 583  Q
    |||||| ||||||||||||||||||||||||||   ||||| |  | ||| ||||  |||||| |||||||  |||||||||||||||||||||||||||    
T  9842135 aaagataatttgatcgttgatccacaaacgaaacttcacatccgtagtattaagcctatgaccacaagcagacacataatcaaaaggtcccatctcatga 9842036  T
Q  584 taatgagaccattttcccgtatcaaaatccaaaatgtagatctgaaatgttgtataaaaatctttatgcgcaatacaacaaaagcgatttcccatccata 683  Q
    | | ||||||||||||| | ||||||||||| ||||||||| ||| ||||  |||||  |||||||  |||||| ||| ||| |||||||||||||||||    
T  9842035 tgaagagaccattttcctgaatcaaaatccagaatgtagatttgatatgtactataagtatctttagtcgcaatgcaagaaaggcgatttcccatccata 9841936  T
Q  684 aaaatcttgcaa------catgtagaatcgttatagagggaaataaatattctcgtacaataatttccttgtcaacatccatcacaatcactttatcatt 777  Q
    ||| | | ||||      ||    | ||  || ||||||||| |  |||||||||||||||| ||||||||||||||||||||||||||||||| ||||     
T  9841935 aaagtatcgcaagcggaccaaaacgcatatttctagagggaagtggatattctcgtacaatagtttccttgtcaacatccatcacaatcactttgtcata 9841836  T
Q  778 tgttatccaataaagatccttgcctccactataaag 813  Q
    ||||||||| |||||||| |||||||||||||||||    
T  9841835 tgttatccagtaaagatcattgcctccactataaag 9841800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 473 - 821
Target Start/End: Complemental strand, 9860787 - 9860438
Alignment:
Q  473 agagatactttaaagatgatttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggtc 572  Q
    |||| |||||||||||| ||||||| ||||||||||||||||||| ||||| ||||||| | |||||| ||||| |||||||  ||||||||||||||||    
T  9860787 agagctactttaaagataatttgatggttgatccacaaacgaaatgccacaaacaaaatctgaagctcttgaccacaagcagacacataatcaaaaggtc 9860688  T
Q  573 ccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtaga-tctgaaatgttgtataaaaatctttatgcgcaatacaacaaaagcgat 671  Q
    |||||||||||||| ||||||||||||| | ||||  |||||||||| | | | ||| ||||| |||| || ||||||   ||||| ||| ||| ||  |    
T  9860687 ccatctcatgataaagagaccattttcctgaatcatgatccaaaatgaatattttgatatgttctatagaattctttagaggcaatgcaagaaaggcagt 9860588  T
Q  672 ttcccatccataaaaatcttgcaacatgtagaatcgttatagagggaaataaatattctcgtacaataatttccttgtcaacatccatcacaatcacttt 771  Q
    ||||||||||| || || ||| ||   |     |||  | |  |||||  | ||||||||||| |||||||| | ||||||||||||| ||||||||||     
T  9860587 ttcccatccatgaatattttggaattagactgttcggcacatggggaagcagatattctcgtataataatttgcctgtcaacatccatgacaatcacttc 9860488  T
Q  772 atcatttgttatccaataaagatccttgcctccactataaagtatttgcc 821  Q
     |  |||||||||||||||| ||| |||||||||||||||||| ||||||    
T  9860487 cttttttgttatccaataaatatcattgcctccactataaagtgtttgcc 9860438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 325 - 452
Target Start/End: Complemental strand, 9860956 - 9860829
Alignment:
Q  325 tagctatgtcggagtacttggaaatgaaactaaactgttaacgtgaggccatacctcaaaattgcccatggtaatgccctcaatctttgtcaaatgtttg 424  Q
    ||||||||  ||||||| ||| ||||||||||||||||||| ||||| ||||||||||||||  ||||    ||||||||| ||| ||||||| ||| |     
T  9860956 tagctatgctggagtacatggcaatgaaactaaactgttaatgtgagaccatacctcaaaatcacccacatcaatgccctcgatcattgtcaattgtcta 9860857  T
Q  425 gtcttgacattgtaaccaaaatgtatgt 452  Q
    || |||||||||||||||||||| ||||    
T  9860856 gttttgacattgtaaccaaaatgaatgt 9860829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 325 - 452
Target Start/End: Complemental strand, 9842315 - 9842188
Alignment:
Q  325 tagctatgtcggagtacttggaaatgaaactaaactgttaacgtgaggccatacctcaaaattgcccatggtaatgccctcaatctttgtcaaatgtttg 424  Q
    ||||||||  ||||||| ||| |||||||||| |||||||  |||| | ||||| ||||| ||||| | |  |||| |||||||||||||||| ||  ||    
T  9842315 tagctatgcaggagtacctggcaatgaaactagactgttagtgtgaagacatacttcaaagttgccaacgtcaatgtcctcaatctttgtcaattgcctg 9842216  T
Q  425 gtcttgacattgtaaccaaaatgtatgt 452  Q
    ||||| ||||||||||||||||||||||    
T  9842215 gtcttcacattgtaaccaaaatgtatgt 9842188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 724 - 770
Target Start/End: Complemental strand, 9902839 - 9902793
Alignment:
Q  724 atattctcgtacaataatttccttgtcaacatccatcacaatcactt 770  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  9902839 atattctcgtagaataatttccttgtcaacatccatcacaatcactt 9902793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 728 - 811
Target Start/End: Complemental strand, 9846935 - 9846852
Alignment:
Q  728 tctcgtacaataatttccttgtcaacatccatcacaatcactttatcatttgttatccaataaagatccttgcctccactataa 811  Q
    ||||||| | ||||||||||||||||||| | |||||||||||  | | |||  |||||||||||||| |||||||||||||||    
T  9846935 tctcgtaaagtaatttccttgtcaacatcgaacacaatcacttccttaattgacatccaataaagatcattgcctccactataa 9846852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 325 - 447
Target Start/End: Complemental strand, 9903244 - 9903122
Alignment:
Q  325 tagctatgtcggagtacttggaaatgaaactaaactgttaacgtgaggccatacctcaaaattgcccatggtaatgccctcaatctttgtcaaatgtttg 424  Q
    ||||||||  ||||||||||  |||||||||| |||||||  ||||  |||||| | |||||  |||| |  |||| ||||||||||| |||| ||||||    
T  9903244 tagctatggtggagtacttgacaatgaaactagactgttagtgtgaaaccatactttaaaatctcccacgtcaatgtcctcaatctttatcaattgtttg 9903145  T
Q  425 gtcttgacattgtaaccaaaatg 447  Q
    ||||| |||||||||| ||||||    
T  9903144 gtcttcacattgtaacaaaaatg 9903122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 545 - 634
Target Start/End: Complemental strand, 27361062 - 27360973
Alignment:
Q  545 ccgcaagcagcaacataatcaaaaggtcccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagatctgaaatgtt 634  Q
    |||||||||||  | ||||||||||||||||||||||||||| ||  |||||||||   ||||||||||||| | ||||| ||| |||||    
T  27361062 ccgcaagcagcctcgtaatcaaaaggtcccatctcatgataaagattccattttcctaaatcaaaatccaaagtatagatttgatatgtt 27360973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 583
Target Start/End: Complemental strand, 9847165 - 9847066
Alignment:
Q  484 aaagatgatttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggtcccatctcatga 583  Q
    |||||| |||||||| |||||||| |||||||||||||||  || ||||||||   || |||| |||||| | | | || |||||||| |||||||||||    
T  9847165 aaagataatttgatcattgatccaaaaacgaaataccacactcataatatcaataccaggaccacaagcacccatacaaacaaaaggttccatctcatga 9847066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 8e-45; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 491 - 812
Target Start/End: Complemental strand, 39572499 - 39572169
Alignment:
Q  491 atttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggtcccatctcatgataatgag 590  Q
    ||||||||||||||||| | || ||||| | ||  || |||||||||||  | ||| ||||||||||||||||||||||||||||||||||||||| |||    
T  39572499 atttgatcgttgatccatagacaaaatatctcaatcataatatcaagctggttaccacaagcagcaacataatcaaaaggtcccatctcatgataaggag 39572400  T
Q  591 accattttcccgtatcaaaatccaaaatgtagatctgaaatgttgtataaaa---atctttatgcgcaatacaacaaaagcgatttcccatccataaaaa 687  Q
    |||||||||  | |||||||||||||||||||||  || || || | | |||   |||||||| | |||| ||| ||||||||||| |||||||||||||    
T  39572399 accattttcttgaatcaaaatccaaaatgtagattggatatcttttttgaaaatgatctttatacacaatgcaagaaaagcgattttccatccataaaaa 39572300  T
Q  688 tcttgcaacatgtaga---------atcgttatagagggaaataaatattctcgtacaataatttccttgtcaacatccatcacaatcactttatcattt 778  Q
     |||   ||| || ||         |||   | ||  ||||||  |||||||||||||||||||||||| ||||||||||||||||||||||  ||||||    
T  39572299 -ctt--cacaggtggacgaccacgcatcaacacaggtggaaatggatattctcgtacaataatttccttatcaacatccatcacaatcacttcctcattt 39572203  T
Q  779 gttatccaataaagatccttgcctccactataaa 812  Q
    ||||||||||||||||| || |||||||||||||    
T  39572202 gttatccaataaagatcattacctccactataaa 39572169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 715 - 812
Target Start/End: Complemental strand, 39576272 - 39576175
Alignment:
Q  715 gggaaataaatattctcgtacaataatttccttgtcaacatccatcacaatcactttatcatttgttatccaataaagatccttgcctccactataaa 812  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||| |||||||| ||||||||||||||||    
T  39576272 gggaaatgaatattctcgtacaataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattgcctccactataaa 39576175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 324 - 452
Target Start/End: Complemental strand, 39576687 - 39576559
Alignment:
Q  324 ctagctatgtcggagtacttggaaatgaaactaaactgttaacgtgaggccatacctcaaaattgcccatggtaatgccctcaatctttgtcaaatgttt 423  Q
    ||||||||||||||||||||||||||||||  | |||||||  |||| ||||||| |||||||  |||  || ||||||||||||||||||||| |||||    
T  39576687 ctagctatgtcggagtacttggaaatgaaaaaagactgttagtgtgaagccatacttcaaaatcacccgaggcaatgccctcaatctttgtcaattgttt 39576588  T
Q  424 ggtcttgacattgtaaccaaaatgtatgt 452  Q
    ||||||||||||||||| |||||||||||    
T  39576587 ggtcttgacattgtaactaaaatgtatgt 39576559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 484 - 624
Target Start/End: Complemental strand, 225502 - 225362
Alignment:
Q  484 aaagatgatttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggtcccatctcatga 583  Q
    |||||||||||||||||||||||||||||||||| ||||| | ||||||  |||| || |||||||| |||| |||||| |||||||||  |||||||||    
T  225502 aaagatgatttgatcgttgatccacaaacgaaatgccacacaaaaaatactaagcccacgaccgcaaacagccacataaccaaaaggtcagatctcatga 225403  T
Q  584 taatgagaccattttcccgtatcaaaatccaaaatgtagat 624  Q
    ||| ||||||||||||  | ||||||||| || ||||||||    
T  225402 taaagagaccattttcttgcatcaaaatctaacatgtagat 225362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 472 - 688
Target Start/End: Complemental strand, 4146673 - 4146454
Alignment:
Q  472 tagagatactttaaagatgatttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggt 571  Q
    ||||||||||  || ||| ||||||| ||||||||| |||| ||| |||||| ||| ||||| || |||||| ||||||||||    | |||||||||||    
T  4146673 tagagatactcgaaggataatttgatggttgatccagaaacaaaacaccacacacagaatatgaatctcatggccgcaagcagtcggaaaatcaaaaggt 4146574  T
Q  572 cccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagatctgaaatgttgtataaaa---atctttatgcgcaatacaacaaaagc 668  Q
    ||||||||||||||| |||||||||||||    |||||||||||||  ||||| ||||||||| || ||||   ||| |||| | |||| ||| ||| |     
T  4146573 cccatctcatgataaagagaccattttcctaactcaaaatccaaaacatagatttgaaatgttctacaaaatgcatcattattcacaatgcaagaaaggt 4146474  T
Q  669 gatttcccatccataaaaat 688  Q
    |||||||||||| |||||||    
T  4146473 gatttcccatccctaaaaat 4146454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 491 - 624
Target Start/End: Complemental strand, 39576505 - 39576372
Alignment:
Q  491 atttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggtcccatctcatgataatgag 590  Q
    |||||||||||||||||||||||||||| | ||  || ||||| |||||  | ||| | ||||||||||||||  ||||||||||||||||||||| |||    
T  39576505 atttgatcgttgatccacaaacgaaatatcgcactcataatattaagctggttaccactagcagcaacataattgaaaggtcccatctcatgataaagag 39576406  T
Q  591 accattttcccgtatcaaaatccaaaatgtagat 624  Q
    |||||| ||| | ||||||||||||| |||||||    
T  39576405 accattctcctgaatcaaaatccaaagtgtagat 39576372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 538 - 645
Target Start/End: Original strand, 2326337 - 2326444
Alignment:
Q  538 ctcatgaccgcaagcagcaacataatcaaaaggtcccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagatctgaaatgttgta 637  Q
    ||||||||| |||| ||| ||||||||||| |||||||||||||||||| ||||| ||||||| | |||||||| |||||||||||| ||||||||| ||    
T  2326337 ctcatgaccacaagtagccacataatcaaatggtcccatctcatgataaagagacaattttcctgaatcaaaattcaaaatgtagatttgaaatgttcta 2326436  T
Q  638 taaaaatc 645  Q
    | ||||||    
T  2326437 ttaaaatc 2326444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 561 - 642
Target Start/End: Original strand, 4100463 - 4100544
Alignment:
Q  561 aatcaaaaggtcccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagatctgaaatgttgtataaaa 642  Q
    |||||||||||||||||||||||||| |||||||||||||    |||||||||||||||||||| ||||||||| |||||||    
T  4100463 aatcaaaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctataaaa 4100544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 724 - 810
Target Start/End: Original strand, 2326523 - 2326609
Alignment:
Q  724 atattctcgtacaataatttccttgtcaacatccatcacaatcactttatcatttgttatccaataaagatccttgcctccactata 810  Q
    ||||||||| | |||||||||||||||||||| ||||||||||||||  |  | ||||||||| |||||||| ||| ||||||||||    
T  2326523 atattctcgcataataatttccttgtcaacattcatcacaatcacttccttttctgttatccagtaaagatcattgtctccactata 2326609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 724 - 812
Target Start/End: Original strand, 3561698 - 3561786
Alignment:
Q  724 atattctcgtacaataatttccttgtcaacatccatcacaatcactttatcatttgttatccaataaagatccttgcctccactataaa 812  Q
    ||||||||  ||||||| ||||||||||||||||||||||||||||   || |||  |||||| |||||||| ||||| ||||||||||    
T  3561698 atattctctgacaataacttccttgtcaacatccatcacaatcactgattcctttagtatccagtaaagatcattgccaccactataaa 3561786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 545 - 685
Target Start/End: Original strand, 3561513 - 3561653
Alignment:
Q  545 ccgcaagcagcaacataatcaaaaggtcccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagatctgaaatgttgtataaaaat 644  Q
    ||||||||| | |||||||||||  || ||||||| |||||| | ||||||||||| | ||  | |||||||||||| || ||||||||| ||     ||    
T  3561513 ccgcaagcaaccacataatcaaagagtaccatctcgtgataaagtgaccattttcctgaattgatatccaaaatgtaaatttgaaatgttttaatgggat 3561612  T
Q  645 ctttatgcgcaatacaacaaaagcgatttcccatccataaa 685  Q
    ||| |||| |||| ||| ||| | |||||||||||||||||    
T  3561613 cttcatgcacaatgcaagaaaggtgatttcccatccataaa 3561653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 397 - 447
Target Start/End: Original strand, 3561339 - 3561389
Alignment:
Q  397 aatgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatg 447  Q
    ||||||||| |||||||||||  || | |||||||||||||||||||||||    
T  3561339 aatgccctctatctttgtcaatcgtctagtcttgacattgtaaccaaaatg 3561389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 728 - 818
Target Start/End: Complemental strand, 7256738 - 7256648
Alignment:
Q  728 tctcgtacaataatttccttgtcaacatccatcacaatcactttatcatttgttatccaataaagatccttgcctccactataaagtattt 818  Q
    ||||| |||||| ||||||| |||||||| ||||||||||||| |||  ||||||| || |||||||| ||||||||| ||||||||||||    
T  7256738 tctcgaacaatagtttccttttcaacatctatcacaatcacttcatccattgttattcagtaaagatcattgcctccattataaagtattt 7256648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 351 - 452
Target Start/End: Complemental strand, 7257110 - 7257009
Alignment:
Q  351 aaactaaactgttaacgtgaggccatacctcaaaattgcccatggtaatgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatgtat 450  Q
    |||||| |||||||  ||||| |||||| ||||||||||||||   |||| |||||||||| ||||| ||  ||||||| ||||| |||||||||| |||    
T  7257110 aaactagactgttagtgtgagaccatacttcaaaattgcccattccaatgtcctcaatcttagtcaattgcctggtcttcacattataaccaaaatatat 7257011  T
Q  451 gt 452  Q
    ||    
T  7257010 gt 7257009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 735 - 811
Target Start/End: Original strand, 49385960 - 49386036
Alignment:
Q  735 caataatttccttgtcaacatccatcacaatcactttatcatttgttatccaataaagatccttgcctccactataa 811  Q
    |||||||||||||  |||||| ||||||||||||||  ||  |||||||||| |||||||| || ||||||||||||    
T  49385960 caataatttccttaacaacattcatcacaatcacttcctctcttgttatccagtaaagatcatttcctccactataa 49386036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 561 - 624
Target Start/End: Complemental strand, 7256908 - 7256845
Alignment:
Q  561 aatcaaaaggtcccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagat 624  Q
    |||||||||||||||||  ||||||| ||||||||||||  | ||||||||| |||||||||||    
T  7256908 aatcaaaaggtcccatcatatgataaagagaccattttcttgaatcaaaatctaaaatgtagat 7256845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 724 - 795
Target Start/End: Complemental strand, 49385925 - 49385853
Alignment:
Q  724 atattctcgtacaataatttccttgtcaacatccatcacaatcactttatc-atttgttatccaataaagatc 795  Q
    ||||||| |||||||||||||||| |||| || ||||||||||||||| ||  ||||||||| | ||||||||    
T  49385925 atattcttgtacaataatttccttatcaatattcatcacaatcactttttctctttgttatctagtaaagatc 49385853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 545 - 634
Target Start/End: Original strand, 2835 - 2924
Alignment:
Q  545 ccgcaagcagcaacataatcaaaaggtcccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagatctgaaatgtt 634  Q
    |||||||||||  | ||||||||||||||||||||||||||| ||  |||||||||   ||||||||||||| | ||||| ||| |||||    
T  2835 ccgcaagcagcctcgtaatcaaaaggtcccatctcatgataaagattccattttcctaaatcaaaatccaaagtatagatttgatatgtt 2924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 736 - 812
Target Start/End: Original strand, 112829 - 112905
Alignment:
Q  736 aataatttccttgtcaacatccatcacaatcactttatcatttgttatccaataaagatccttgcctccactataaa 812  Q
    |||||||||| ||||||||||||||||| |||||  |||  ||||||||||||||| ||| ||  ||||| ||||||    
T  112829 aataatttccctgtcaacatccatcacagtcactccatcccttgttatccaataaatatcattttctccattataaa 112905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 558 - 600
Target Start/End: Original strand, 112636 - 112678
Alignment:
Q  558 cataatcaaaaggtcccatctcatgataatgagaccattttcc 600  Q
    ||||||||||||| ||||||||||||||| ||| |||||||||    
T  112636 cataatcaaaaggccccatctcatgataaagagtccattttcc 112678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 496 times since January 2019
Visitors: 8160