View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4407-Insertion-2 (Length: 847)
Name: NF4407-Insertion-2
Description: NF4407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4407-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 548; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 8 - 650
Target Start/End: Original strand, 41695710 - 41696352
Alignment:
| Q |
8 |
ttttccttagcctttcaaaagtaggaagcctctctatggctgcccacttgagctcttcttcatcatcaatatcttccttcttattcttcctctcaaacac |
107 |
Q |
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| T |
41695710 |
ttttccttagcctttcaaaagtaggaagcctctctatggctgcccacttgagctcttcttcatcatcaatatcttccttcttattcttcctctcaaacac |
41695809 |
T |
|
| Q |
108 |
ttgatcaccactccatacttcagctggaacacttgttgatgtccaacttctactacttgaagatccaatgttcatccttaggctgcttattgatctcaaa |
207 |
Q |
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| T |
41695810 |
ttgatcaccactccatacttcagctggaacacttgttgatgtccaacttctactacttgaagatccaatgttcatccttaggctgcttattgatctcaaa |
41695909 |
T |
|
| Q |
208 |
ccatcatctttatctaacccttcctccatttttgcttgtgtttggagtattaatgaaaattctaataggtaggtgttggtagggaaattttgatagtagt |
307 |
Q |
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| T |
41695910 |
ccatcatctttatctaacccttcctccatttttgcttgtgtttggagtattaatgaaaattctaataggtaggtgttggtagggaaattttgatagtagt |
41696009 |
T |
|
| Q |
308 |
accacaaaactttatgtgtggaagttggaagggttgaggtattttattgtctccataattggaaaggatgtgatggattagatgaatgatagtccaattg |
407 |
Q |
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| T |
41696010 |
accacaaaactttatgtgtggaagttggaagggttgaggtattttattgtctccataattggaaaggatgtgatggattagatgaatgatagtccaattg |
41696109 |
T |
|
| Q |
408 |
gtgaagtgtcgtcctatgtttaatgtcaattaaatagtaattggttttaaaataaaaatgacactagacttnnnnnnnnnnnnnttaaattaaatttacc |
507 |
Q |
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| T |
41696110 |
gtgaagtgtcgtcctatgtttaatgtcaattaaatagtaattggttttaaaataaaaatgacgctagacttgaaaaaaaaataaaaaaaataaatttacg |
41696209 |
T |
|
| Q |
508 |
gagcctaaaatttgaatccacatcaaacatgataaggttcaactaacttagtcagacgagacatctataactattttgttattgggtattgctataaaac |
607 |
Q |
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| T |
41696210 |
gagcctaaaatttgaatctacatcaaacatgataagtctcgactaacttagtcaaacgagacatctatagctattttgttattgggtattgctataaaac |
41696309 |
T |
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| Q |
608 |
actcatgaaggtgtaatttagcactcaacacctacatgataaa |
650 |
Q |
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| T |
41696310 |
attcatgaaggtgtgatttagcactcaacacctacgtgataaa |
41696352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 646 - 847
Target Start/End: Original strand, 41696386 - 41696587
Alignment:
| Q |
646 |
ataaatacatattaaagagaaatgatttttgtctttatcatgtagatgttttgtgttaaatcacaccttcatggatgttttatagcaataccctttgtta |
745 |
Q |
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| T |
41696386 |
ataaatacatattaaagagaaatgatttttgtctttatcatataggtgttttgtgctaaatcacacattcatggatgttttatagcaatatgctttgtta |
41696485 |
T |
|
| Q |
746 |
tttactataatgctcacttctcaaaactaaatgaaaaatgctagtatctaacatttattttttaattcaatcttttctattgaataaaattcatgtgacc |
845 |
Q |
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| T |
41696486 |
tttactttaatgctcacttctcaaaactaaatgaaaaatgctagtatctaacatttattttttaattcaatctcttctattgaataaaattcatgtgacc |
41696585 |
T |
|
| Q |
846 |
ca |
847 |
Q |
| |
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|| |
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|
| T |
41696586 |
ca |
41696587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 671 - 738
Target Start/End: Complemental strand, 41696360 - 41696293
Alignment:
| Q |
671 |
tttttgtctttatcatgtagatgttttgtgttaaatcacaccttcatggatgttttatagcaataccc |
738 |
Q |
| |
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| T |
41696360 |
tttttgtctttatcacgtaggtgttgagtgctaaatcacaccttcatgaatgttttatagcaataccc |
41696293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 648 - 713
Target Start/End: Original strand, 38875223 - 38875290
Alignment:
| Q |
648 |
aaatacatattaaagagaaatga--tttttgtctttatcatgtagatgttttgtgttaaatcacacct |
713 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||| || | |||| |||||||||||| |
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| T |
38875223 |
aaatacatattaaagagaaatgacttttttgtctttatcatgtaggtgatgtgtgctaaatcacacct |
38875290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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