View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4407-Insertion-3 (Length: 799)

Name: NF4407-Insertion-3
Description: NF4407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4407-Insertion-3
NF4407-Insertion-3
[»] chr1 (30 HSPs)
chr1 (645-799)||(30252975-30253129)
chr1 (461-628)||(30252765-30252931)
chr1 (470-616)||(5558261-5558407)
chr1 (464-601)||(10907672-10907809)
chr1 (472-553)||(30745359-30745440)
chr1 (472-553)||(30766810-30766891)
chr1 (464-609)||(44107412-44107558)
chr1 (464-553)||(38859866-38859955)
chr1 (464-551)||(23908303-23908389)
chr1 (474-551)||(3346804-3346880)
chr1 (464-553)||(26835353-26835442)
chr1 (464-551)||(7742803-7742889)
chr1 (474-551)||(48392440-48392516)
chr1 (464-551)||(10156040-10156126)
chr1 (474-551)||(29149582-29149658)
chr1 (474-551)||(49902486-49902562)
chr1 (475-551)||(5975006-5975081)
chr1 (522-598)||(1106744-1106822)
chr1 (473-554)||(26511666-26511746)
chr1 (464-601)||(14796842-14796980)
chr1 (464-601)||(14805716-14805854)
chr1 (501-550)||(8430502-8430551)
chr1 (464-553)||(13131912-13132000)
chr1 (464-615)||(42456524-42456676)
chr1 (474-551)||(42517328-42517408)
chr1 (468-554)||(45968682-45968767)
chr1 (504-553)||(37189318-37189367)
chr1 (474-551)||(47022720-47022796)
chr1 (472-553)||(44462510-44462594)
chr1 (474-511)||(37189697-37189734)
[»] chr3 (30 HSPs)
chr3 (464-600)||(43347360-43347495)
chr3 (472-601)||(1781728-1781858)
chr3 (464-615)||(54546857-54547008)
chr3 (472-553)||(10839412-10839493)
chr3 (464-604)||(8926730-8926870)
chr3 (474-582)||(20382505-20382613)
chr3 (476-601)||(33103710-33103835)
chr3 (474-551)||(13856117-13856193)
chr3 (474-582)||(19649406-19649515)
chr3 (476-615)||(22845398-22845536)
chr3 (474-601)||(3178671-3178797)
chr3 (464-570)||(48206852-48206957)
chr3 (474-551)||(5391475-5391551)
chr3 (464-551)||(8950528-8950614)
chr3 (474-551)||(21853215-21853291)
chr3 (474-551)||(23467528-23467604)
chr3 (474-551)||(40845951-40846027)
chr3 (476-601)||(36539598-36539724)
chr3 (476-602)||(791782-791906)
chr3 (474-551)||(44995002-44995079)
chr3 (464-616)||(51336161-51336313)
chr3 (474-551)||(32352865-32352941)
chr3 (474-553)||(47889740-47889820)
chr3 (473-615)||(6280392-6280534)
chr3 (476-549)||(46685819-46685891)
chr3 (483-582)||(47315147-47315246)
chr3 (474-617)||(19644361-19644506)
chr3 (507-582)||(36826021-36826096)
chr3 (467-616)||(50663092-50663235)
chr3 (495-538)||(54378613-54378656)
[»] chr6 (15 HSPs)
chr6 (464-582)||(28750674-28750792)
chr6 (464-616)||(34103638-34103789)
chr6 (464-553)||(13103142-13103231)
chr6 (474-617)||(11279493-11279634)
chr6 (474-615)||(11212625-11212765)
chr6 (474-551)||(14309832-14309908)
chr6 (472-553)||(27863715-27863795)
chr6 (474-551)||(9231888-9231964)
chr6 (474-551)||(24694685-24694761)
chr6 (507-593)||(24500767-24500853)
chr6 (474-551)||(13627558-13627634)
chr6 (474-543)||(1727967-1728035)
chr6 (501-553)||(7517031-7517083)
chr6 (464-504)||(24497598-24497638)
chr6 (518-551)||(11084628-11084661)
[»] chr5 (30 HSPs)
chr5 (472-601)||(11856261-11856391)
chr5 (474-553)||(9738017-9738096)
chr5 (474-617)||(8456997-8457141)
chr5 (464-553)||(614416-614505)
chr5 (474-582)||(10081131-10081239)
chr5 (464-553)||(42119637-42119726)
chr5 (464-570)||(6174743-6174850)
chr5 (464-548)||(39862511-39862594)
chr5 (474-551)||(23218503-23218579)
chr5 (476-553)||(25560363-25560440)
chr5 (474-551)||(37169067-37169143)
chr5 (474-551)||(38397616-38397692)
chr5 (474-601)||(33271304-33271431)
chr5 (464-543)||(10115185-10115264)
chr5 (464-601)||(27916105-27916244)
chr5 (474-551)||(15631631-15631708)
chr5 (474-551)||(16618604-16618680)
chr5 (464-553)||(36769098-36769186)
chr5 (474-582)||(29491448-29491554)
chr5 (474-548)||(6257444-6257517)
chr5 (464-552)||(29790243-29790329)
chr5 (507-617)||(10052599-10052710)
chr5 (482-553)||(3341162-3341232)
chr5 (472-546)||(10052532-10052606)
chr5 (476-554)||(15475430-15475508)
chr5 (126-170)||(6145174-6145218)
chr5 (476-528)||(19322058-19322110)
chr5 (498-600)||(22903226-22903329)
chr5 (22-91)||(6120093-6120162)
chr5 (18-91)||(32621045-32621118)
[»] chr4 (28 HSPs)
chr4 (475-616)||(322584-322726)
chr4 (464-582)||(17888574-17888692)
chr4 (464-553)||(9742557-9742646)
chr4 (461-553)||(35322725-35322817)
chr4 (472-542)||(10094425-10094495)
chr4 (464-614)||(46473948-46474098)
chr4 (474-553)||(20818582-20818661)
chr4 (464-546)||(16338237-16338318)
chr4 (474-551)||(1535789-1535865)
chr4 (472-553)||(12792263-12792344)
chr4 (474-551)||(34241011-34241087)
chr4 (464-604)||(50328759-50328900)
chr4 (474-551)||(52632536-52632612)
chr4 (464-551)||(25954768-25954854)
chr4 (474-553)||(31377405-31377484)
chr4 (474-551)||(35018954-35019030)
chr4 (474-551)||(36012219-36012295)
chr4 (474-551)||(37801298-37801374)
chr4 (474-551)||(46583575-46583651)
chr4 (474-551)||(49284375-49284451)
chr4 (464-556)||(19124762-19124854)
chr4 (472-524)||(47084056-47084108)
chr4 (507-553)||(24991968-24992014)
chr4 (472-604)||(54090144-54090276)
chr4 (476-532)||(5780790-5780846)
chr4 (474-553)||(11054468-11054550)
chr4 (507-551)||(16338311-16338354)
chr4 (476-553)||(33982017-33982096)
[»] chr7 (20 HSPs)
chr7 (474-616)||(33057691-33057833)
chr7 (464-615)||(10334130-10334282)
chr7 (464-551)||(29555963-29556049)
chr7 (474-551)||(32876564-32876640)
chr7 (474-553)||(19334594-19334674)
chr7 (474-551)||(10576691-10576767)
chr7 (474-551)||(34259536-34259612)
chr7 (474-551)||(34707134-34707210)
chr7 (474-551)||(44164777-44164853)
chr7 (475-551)||(24320474-24320549)
chr7 (464-553)||(17303138-17303228)
chr7 (474-551)||(29238177-29238253)
chr7 (474-551)||(29981147-29981223)
chr7 (473-546)||(9770682-9770754)
chr7 (476-617)||(41853081-41853226)
chr7 (495-616)||(26284433-26284556)
chr7 (507-615)||(2702287-2702395)
chr7 (464-524)||(15017817-15017877)
chr7 (501-554)||(23032186-23032239)
chr7 (528-616)||(25128163-25128251)
[»] scaffold0045 (1 HSPs)
scaffold0045 (472-600)||(34484-34612)
[»] chr8 (18 HSPs)
chr8 (482-600)||(34697431-34697550)
chr8 (464-554)||(43282875-43282965)
chr8 (474-551)||(26021413-26021490)
chr8 (461-601)||(19334751-19334890)
chr8 (474-553)||(42072444-42072522)
chr8 (474-551)||(21525376-21525452)
chr8 (464-601)||(10112013-10112151)
chr8 (464-554)||(21488081-21488170)
chr8 (474-551)||(22324614-22324690)
chr8 (474-551)||(35806812-35806888)
chr8 (474-553)||(24065289-24065367)
chr8 (464-551)||(33934393-33934479)
chr8 (474-551)||(42013890-42013966)
chr8 (127-196)||(30193439-30193508)
chr8 (473-524)||(2271239-2271290)
chr8 (474-601)||(16819007-16819137)
chr8 (474-519)||(16523155-16523200)
chr8 (507-540)||(23756566-23756599)
[»] chr2 (20 HSPs)
chr2 (476-591)||(23685406-23685521)
chr2 (474-553)||(1387322-1387400)
chr2 (464-604)||(40780018-40780160)
chr2 (474-551)||(29846460-29846536)
chr2 (472-616)||(41674738-41674883)
chr2 (464-551)||(19181566-19181652)
chr2 (476-551)||(40277324-40277398)
chr2 (472-553)||(14539736-14539817)
chr2 (474-551)||(14942078-14942154)
chr2 (464-616)||(28321727-28321880)
chr2 (461-553)||(33009687-33009780)
chr2 (474-551)||(42769792-42769868)
chr2 (474-544)||(6318492-6318563)
chr2 (492-614)||(32486198-32486320)
chr2 (474-551)||(14186472-14186548)
chr2 (476-553)||(43139761-43139839)
chr2 (476-547)||(3597903-3597973)
chr2 (474-553)||(3956587-3956666)
chr2 (476-548)||(25665244-25665316)
chr2 (474-570)||(2888039-2888135)
[»] scaffold0079 (2 HSPs)
scaffold0079 (464-546)||(54542-54623)
scaffold0079 (507-551)||(54506-54549)
[»] scaffold0086 (1 HSPs)
scaffold0086 (464-570)||(20855-20953)
[»] scaffold0016 (1 HSPs)
scaffold0016 (529-600)||(85479-85550)


Alignment Details
Target: chr1 (Bit Score: 143; Significance: 1e-74; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 645 - 799
Target Start/End: Original strand, 30252975 - 30253129
Alignment:
Q  645 atcatcactatccacattcaaaccattattttcgttgacaacaaaattataaagttagactattatgtaacccgtgcattgataatatttcaatttttct 744  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30252975 atcatcactatccacattaaaaccattattttcgttgacaacaaaattataaagttagactattatgaaacccgtgcattgataatatttcaatttttct 30253074  T
Q  745 agttacaccgaagtattttatttattacatcccaaaatgacaaaaacacctctaa 799  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30253075 agttacactgaagtattttatttattacatcccaaaatgacaaaaacacctctaa 30253129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 461 - 628
Target Start/End: Original strand, 30252765 - 30252931
Alignment:
Q  461 atataaattcttctgaatttctt-atataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctga 559  Q
    ||||||||| |||||||||| || ||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||  |  |    
T  30252765 atataaatttttctgaatttttttatataaatccctataaattagacaacttctttagattttttgattatttgcttgcaatttcttatgtaaaccccta 30252864  T
Q  560 taaatatgttggaatttatttttcctagactttataataatcttgtctccaccactgaaagccactact 628  Q
    ||||||||||||||||| |||| ||   ||||||||||||||||| |||| ||||| ||||||||||||    
T  30252865 taaatatgttggaatttgttttccc--cactttataataatcttggctccgccacttaaagccactact 30252931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 470 - 616
Target Start/End: Complemental strand, 5558407 - 5558261
Alignment:
Q  470 cttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgtt 569  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||| |||| ||  |||||||||||    
T  5558407 cttccgaatttcttatataaacccctataaattggacaatttctttagat-ttttgattatttgcttgcaatttcatatataaactcctataaatatgtt 5558309  T
Q  570 ggaatttattttt-cctagactttataataatcttgtctccaccactg 616  Q
    | ||||| ||||| || |||||||||||||||| ||  ||||||||||    
T  5558308 gtaatttttttttgcccagactttataataatcctggttccaccactg 5558261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 464 - 601
Target Start/End: Original strand, 10907672 - 10907809
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 563  Q
    ||||||| ||||||||||||||||||| ||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||| |  |  |||||    
T  10907672 taaattcctctgaatttcttatataaacccctataaatcagacaatttctttagattttttgattatttgcttgcaatttcttatgtagacacctataaa 10907771  T
Q  564 tatgttggaatttatttttcctagactttataataatc 601  Q
    | ||||| ||||| |||| || ||||||| ||||||||    
T  10907772 tgtgttgcaattttttttgcccagactttgtaataatc 10907809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 472 - 553
Target Start/End: Complemental strand, 30745440 - 30745359
Alignment:
Q  472 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    |||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||    
T  30745440 tctgaatttcttttataaatccctataaattggacaatttctttaaattttttgattatttacttgcaatttcttatgtaaa 30745359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 472 - 553
Target Start/End: Complemental strand, 30766891 - 30766810
Alignment:
Q  472 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    |||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||    
T  30766891 tctgaatttcttttataaatccctataaattggacaatttctttaaattttttgattatttacttgcaatttcttatgtaaa 30766810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 464 - 609
Target Start/End: Original strand, 44107412 - 44107558
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 563  Q
    ||||||| ||||| ||| ||||||||| |||||||||||   ||||||||| ||||||||||||||||| ||||||||||||||||||||  || |||||    
T  44107412 taaattcctctgatttttttatataaacccctataaattaattaatttcttcagattttttgattatttacttgcaatttcttatgtaaaaccttataaa 44107511  T
Q  564 tatgttggaatttattttt-cctagactttataataatcttgtctcc 609  Q
    | ||||| || |||||||| ||  |||||||||||||| ||| ||||    
T  44107512 tgtgttgcaaattatttttgcccggactttataataatgttgactcc 44107558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 464 - 553
Target Start/End: Complemental strand, 38859955 - 38859866
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    ||||||| | ||||||||||||||||| |||||||||||||  ||||| |||||||||||| ||||||||||||||||||||||||||||    
T  38859955 taaattcctatgaatttcttatataaacccctataaattgggcaatttttttagatttttttattatttgcttgcaatttcttatgtaaa 38859866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 464 - 551
Target Start/End: Complemental strand, 23908389 - 23908303
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||| | |||||||||||||||||||||||||||||||| ||||||||||  |||||| ||||||||||||||||||||||||||    
T  23908389 taaattcctatgaatttcttatataaatccctataaattggacaatttctttatgtttttt-attatttgcttgcaatttcttatgta 23908303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 3346880 - 3346804
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  3346880 tgaatttcttatataaacccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgta 3346804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 464 - 553
Target Start/End: Complemental strand, 26835442 - 26835353
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    ||||||| | |||||||||||||||||  ||||||||||| | ||||| ||||||||||||||||||||||||||||||||| |||||||    
T  26835442 taaattcatatgaatttcttatataaactcctataaattgaacaatttttttagattttttgattatttgcttgcaatttctcatgtaaa 26835353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 464 - 551
Target Start/End: Original strand, 7742803 - 7742889
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||| ||| ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  7742803 taaatccttatgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 7742889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 48392440 - 48392516
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    |||||||||||||||||||||||||||||||  |||||| ||| ||||||| ||||||||||||||||||||||||||    
T  48392440 tgaatttcttatataaatccctataaattgggcaatttcattacatttttt-attatttgcttgcaatttcttatgta 48392516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 464 - 551
Target Start/End: Original strand, 10156040 - 10156126
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||| | |||||||||||||||||   |||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  10156040 taaattcctatgaatttcttatataaacttctataaattggacaatttctttatatttttt-attatttgcttgcaatttcttatgta 10156126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 29149582 - 29149658
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||  ||||||||||  |||||| ||||||||||||||||||||||||||    
T  29149582 tgaatttcttatataaacccctataaattgggcaatttctttacgtttttt-attatttgcttgcaatttcttatgta 29149658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 49902562 - 49902486
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||| ||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  49902562 tgaatttcttatataaacccctataaatagggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 49902486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 475 - 551
Target Start/End: Complemental strand, 5975081 - 5975006
Alignment:
Q  475 gaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    |||||||||||||||| ||||||||||| |  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  5975081 gaatttcttatataaacccctataaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 5975006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 522 - 598
Target Start/End: Complemental strand, 1106822 - 1106744
Alignment:
Q  522 tttgattatttgcttgcaatttcttatgtaaattctgataaatatgttg-gaatttattttt-cctagactttataata 598  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||  ||||| ||||| ||||||||||||||||    
T  1106822 tttgattatttgcttgcaatttcttatgtaaattcttataaatgtgttgctaatttttttttacctagactttataata 1106744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 473 - 554
Target Start/End: Original strand, 26511666 - 26511746
Alignment:
Q  473 ctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaat 554  Q
    ||||||||||||||||||| ||| ||||||| |||||||||||| | ||||||||||||| ||| |||||||||| ||||||    
T  26511666 ctgaatttcttatataaattcctgtaaattgaataatttcttta-aatttttgattatttacttacaatttcttacgtaaat 26511746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 464 - 601
Target Start/End: Complemental strand, 14796980 - 14796842
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 563  Q
    ||||||| ||||||||||||||||| |  | |||||||| |   ||| |||||||||||| || ||||||||||||||||||||||||||  |  |||||    
T  14796980 taaattcctctgaatttcttatatacacacttataaattaggccattactttagatttttcgaatatttgcttgcaatttcttatgtaaacccgtataaa 14796881  T
Q  564 tatgttggaa-tttatttttcctagactttataataatc 601  Q
    | | ||| || ||| |||| || ||||||||||||||||    
T  14796880 tgtattgcaattttgttttgcccagactttataataatc 14796842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 464 - 601
Target Start/End: Complemental strand, 14805854 - 14805716
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 563  Q
    ||||||| ||||||||||||||||| |  | |||||||| |   ||| |||||||||||| || ||||||||||||||||||||||||||  |  |||||    
T  14805854 taaattcctctgaatttcttatatacacacttataaattaggccattactttagatttttcgaatatttgcttgcaatttcttatgtaaacccgtataaa 14805755  T
Q  564 tatgttggaa-tttatttttcctagactttataataatc 601  Q
    | | ||| || ||| |||| || ||||||||||||||||    
T  14805754 tgtattgcaattttgttttgcccagactttataataatc 14805716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 501 - 550
Target Start/End: Original strand, 8430502 - 8430551
Alignment:
Q  501 ttggataatttctttagattttttgattatttgcttgcaatttcttatgt 550  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  8430502 ttggataatttctttaaatttttttattatttgcttgcaatttcttatgt 8430551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 464 - 553
Target Start/End: Complemental strand, 13132000 - 13131912
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    ||||||| ||| ||||| ||||||||||| |||||||||||| |||||||||||  |||||  |||| | ||||||||||||||||||||    
T  13132000 taaattcctctaaattttttatataaatcactataaattggacaatttctttag-ctttttacttatctccttgcaatttcttatgtaaa 13131912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 464 - 615
Target Start/End: Complemental strand, 42456676 - 42456524
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaat-tctgataa 562  Q
    ||||||| | ||||||||||||||||| |||||||||||||  |||||||||| |    || ||||| | |||||||||||||||||||||  |  ||||    
T  42456676 taaattcctatgaatttcttatataaacccctataaattgggcaatttctttaaaaaaatttattatctacttgcaatttcttatgtaaatcccctataa 42456577  T
Q  563 atatgttggaatttatttttcctagactttataataatcttgtctccaccact 615  Q
    || ||||| ||||| |||||||  ||| ||| ||||||| || |||| |||||    
T  42456576 atgtgttgcaatttttttttcccggaccttacaataatcctggctccgccact 42456524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 42517328 - 42517408
Alignment:
Q  474 tgaatttcttatataaat----ccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    |||||||||||||||||     |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  42517328 tgaatttcttatataaacaaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 42517408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 468 - 554
Target Start/End: Complemental strand, 45968767 - 45968682
Alignment:
Q  468 ttcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaat 554  Q
    |||| |||||||| ||||||||   | ||||||||||| ||||| | ||||||||| |||||||| |||||||||||||||||||||    
T  45968767 ttctcctgaattttttatataatctcttataaattggacaatttttatagattttt-gattatttacttgcaatttcttatgtaaat 45968682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 504 - 553
Target Start/End: Complemental strand, 37189367 - 37189318
Alignment:
Q  504 gataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    |||||||| |||| |||||||||||||||| |||||||||||||||||||    
T  37189367 gataatttatttaaattttttgattatttgtttgcaatttcttatgtaaa 37189318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 47022796 - 47022720
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    |||||||||||||||||  |||||||||| |  |||||||||| ||||||| ||||||| |||| |||||||||||||    
T  47022796 tgaatttcttatataaactcctataaattaggcaatttctttatatttttt-attatttacttgtaatttcttatgta 47022720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 472 - 553
Target Start/End: Original strand, 44462510 - 44462594
Alignment:
Q  472 tctgaatttcttatataaatccctataaattggataatttctttaga---ttttttgattatttgcttgcaatttcttatgtaaa 553  Q
    ||||||||||||||| ||| | ||||||||| || ||||||||  ||   |||||||||||||| |||||| |||||||| ||||    
T  44462510 tctgaatttcttatacaaacctctataaattagacaatttcttctgatttttttttgattatttacttgcagtttcttatataaa 44462594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 37189734 - 37189697
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataattt 511  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  37189734 tgaatttcttatataaatctctataaattggacaattt 37189697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 3e-35; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 464 - 600
Target Start/End: Original strand, 43347360 - 43347495
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 563  Q
    ||||||| ||||||||||||||||||| ||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||  || ||||     
T  43347360 taaattcctctgaatttcttatataaacccctacaaattgggcaatttctttagattttttgattatttgcttgcaatttcttatgtaaaccct-ataat 43347458  T
Q  564 tatgttggaatttatttttcctagactttataataat 600  Q
    ||||||| ||||| |||| || | |||||||||||||    
T  43347459 tatgttgcaattttttttgcccaaactttataataat 43347495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 472 - 601
Target Start/End: Complemental strand, 1781858 - 1781728
Alignment:
Q  472 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttgg 571  Q
    ||||||||||||||||||| ||| |||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||  |  |||||| |||||     
T  1781858 tctgaatttcttatataaaccccaataaattgggcaatttctttagattttttgattatttgcttgcaatttcgtatgtaaacccctataaatgtgttgc 1781759  T
Q  572 aatttattttt-cctagactttataataatc 601  Q
    ||||| ||||| || ||||||||||||||||    
T  1781758 aatttttttttgcccagactttataataatc 1781728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 464 - 615
Target Start/End: Complemental strand, 54547008 - 54546857
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 563  Q
    ||||||| | ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||| |  |||||    
T  54547008 taaattcctttgaatttcttatataaacccctataaattggacaatttctttagat-ttttgattatttgcttacaatttcttatgtaaatccctataaa 54546910  T
Q  564 tatgttggaa-tttatttttcctagactttataataatcttgtctccaccact 615  Q
    | ||||  || ||| ||||| | |||||||||||||||| || |||| |||||    
T  54546909 tgtgttacaattttttttttaccagactttataataatcctggctccgccact 54546857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 472 - 553
Target Start/End: Original strand, 10839412 - 10839493
Alignment:
Q  472 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    ||||||||||||||||||| | |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  10839412 tctgaatttcttatataaacctctataaattgggcaatttctttagattttttgattatttgcttgcaatttcttatgtaaa 10839493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 464 - 604
Target Start/End: Complemental strand, 8926870 - 8926730
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 563  Q
    ||||||| ||||||||||| ||||||| ||||||||||| |  ||||||| |||||||||||||||||||||||||||||||||||| ||  || |||||    
T  8926870 taaattcctctgaatttctgatataaacccctataaatttggcaatttctgtagattttttgattatttgcttgcaatttcttatgttaacccttataaa 8926771  T
Q  564 tatgttggaatttatttttcctagactttataataatcttg 604  Q
    | ||||| |  || ||||||| |  ||||||||||||||||    
T  8926770 tgtgttgcagattttttttcccaagctttataataatcttg 8926730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 474 - 582
Target Start/End: Complemental strand, 20382613 - 20382505
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaa 573  Q
    ||||||||||||||||| |||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||| ||  ||||||  |||| ||    
T  20382613 tgaatttcttatataaacccctataaattgggaaatttctttagatttttttattatttgcttgcaatttcttatgtaaactcctataaatgcgttgcaa 20382514  T
Q  574 tttattttt 582  Q
    ||| |||||    
T  20382513 ttttttttt 20382505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 476 - 601
Target Start/End: Complemental strand, 33103835 - 33103710
Alignment:
Q  476 aatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttg-gaat 574  Q
    |||||||||||||| ||||||||||||||||||||| |||| ||||||| |||||||||||| |||||||||||||||| || |||||| |||||  |||    
T  33103835 aatttcttatataagtccctataaattggataatttatttaaatttttt-attatttgcttgtaatttcttatgtaaatccttataaatgtgttgcaaat 33103737  T
Q  575 ttatttttcctagactttataataatc 601  Q
    || |||| || | ||||||||||||||    
T  33103736 tttttttacccaaactttataataatc 33103710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 13856193 - 13856117
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  13856193 tgaatttcttatataaatccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgta 13856117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 474 - 582
Target Start/End: Original strand, 19649406 - 19649515
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagatttttt-gattatttgcttgcaatttcttatgtaaattctgataaatatgttgga 572  Q
    ||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| | |  |||||| ||||| |    
T  19649406 tgaatttcttatataaacccttataaattggacaatttctttagattttttggattatttgcttgcaatttcttatgtaattccctataaatgtgttgca 19649505  T
Q  573 atttattttt 582  Q
    |||| |||||    
T  19649506 attttttttt 19649515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 476 - 615
Target Start/End: Original strand, 22845398 - 22845536
Alignment:
Q  476 aatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaatt 575  Q
    ||||||||||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||||| |||| ||||  || |||||||||| | ||||    
T  22845398 aatttcttatataaacccctataaatttgacaatttctttagatttttt-attatttgcttgcaattttttatataaaccct-ataaatatgtcgtaatt 22845495  T
Q  576 tattttt-cctagactttataataatcttgtctccaccact 615  Q
    | |||||  |||||||||||||||||| || |||| |||||    
T  22845496 tctttttatctagactttataataatcctgactccgccact 22845536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 474 - 601
Target Start/End: Complemental strand, 3178797 - 3178671
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaa 573  Q
    ||||||||||||||||||| |||||||||||  ||||||||||| ||||||  |||||||||||||||||| |||||||| ||  |||||||||||| ||    
T  3178797 tgaatttcttatataaatctctataaattgggcaatttctttagtttttttt-ttatttgcttgcaatttcgtatgtaaactcctataaatatgttgcaa 3178699  T
Q  574 tttatttttcctagactttataataatc 601  Q
    ||| ||||  | |||||||| |||||||    
T  3178698 ttttttttgtccagactttacaataatc 3178671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 464 - 570
Target Start/End: Complemental strand, 48206957 - 48206852
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 563  Q
    ||||||| |||||||| |||||||||| ||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||  || |||||    
T  48206957 taaattcctctgaatt-cttatataaacccctataaatttgacaatttttttagattttttgattatttacttgcaatttcttatgtaaacacttataaa 48206859  T
Q  564 tatgttg 570  Q
    | |||||    
T  48206858 tgtgttg 48206852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 5391551 - 5391475
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  5391551 tgaatttcttatataaacccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgta 5391475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 464 - 551
Target Start/End: Original strand, 8950528 - 8950614
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||| | |||||||||||||||||||||||||||||||  |||||||||| ||||||| |||||||||||| |||||||||||||    
T  8950528 taaattcctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgaaatttcttatgta 8950614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 21853291 - 21853215
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  21853291 tgaatttcttatataaaaccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 21853215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 23467528 - 23467604
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  23467528 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 23467604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 40845951 - 40846027
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  40845951 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 40846027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 476 - 601
Target Start/End: Complemental strand, 36539724 - 36539598
Alignment:
Q  476 aatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaatt 575  Q
    ||||||||||||||  |||||||||||||  |||||||||| |||||||||||||||| |||||||||| ||||||||  |  |||||| ||||| ||||    
T  36539724 aatttcttatataatcccctataaattgggcaatttctttaaattttttgattatttgtttgcaatttcctatgtaaacccctataaatgtgttgcaatt 36539625  T
Q  576 tatttt-tcctagactttataataatc 601  Q
    | ||||  || ||||||| ||||||||    
T  36539624 ttttttcgcccagactttgtaataatc 36539598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 476 - 602
Target Start/End: Complemental strand, 791906 - 791782
Alignment:
Q  476 aatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaatt 575  Q
    |||||||||||||||| |||||||||||  ||||||||||| ||||||||||||||   ||| |||||||||||||||  |  || ||| ||||| ||||    
T  791906 aatttcttatataaattcctataaattgcgtaatttctttatattttttgattatt---ttgtaatttcttatgtaaacacctattaatgtgttgcaatt 791810  T
Q  576 tattttt-cctagactttataataatct 602  Q
    | ||||| || |||||||||||||||||    
T  791809 tttttttgcccagactttataataatct 791782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 44995002 - 44995079
Alignment:
Q  474 tgaatttcttatataaatccct-ataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||| |||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  44995002 tgaatttcttatataaaccccttataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 44995079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 464 - 616
Target Start/End: Complemental strand, 51336313 - 51336161
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa-ttctgataa 562  Q
    |||||||| |||||||| |||||||||||  |||||||| || |||||||||| ||||||| ||||||| |||||||||||||| ||||| |||| ||||    
T  51336313 taaattctcctgaattttttatataaatctttataaatttgacaatttctttaaatttttt-attatttacttgcaatttcttacgtaaacttct-ataa 51336216  T
Q  563 atatgttg-gaatttatttttcctagactttataataatcttgtctccaccactg 616  Q
    || |||||  ||||| |||| || | | |||||||||||  || |||||||||||    
T  51336215 atgtgttgtaaattttttttgcccaaattttataataattatggctccaccactg 51336161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 32352941 - 32352865
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| ||||||||||| |  |||||||||| ||||||| ||||||||||| ||||||||||||||    
T  32352941 tgaatttcttatataaacccctataaattaggcaatttctttacatttttt-attatttgcttacaatttcttatgta 32352865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 474 - 553
Target Start/End: Complemental strand, 47889820 - 47889740
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttg-caatttcttatgtaaa 553  Q
    |||||||||||||||||| ||||||||||||  |||||||||| ||||||| ||||||| |||| |||||||| |||||||    
T  47889820 tgaatttcttatataaattcctataaattgggcaatttctttaaatttttttattatttacttgacaatttctaatgtaaa 47889740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 473 - 615
Target Start/End: Original strand, 6280392 - 6280534
Alignment:
Q  473 ctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttg-g 571  Q
    |||||||||||||||||| | ||||||||| || ||||| |||||| |||||||| |||||||||| |||| |||||||||   | |||||| |||||      
T  6280392 ctgaatttcttatataaacctctataaatttgacaatttatttaga-tttttgataatttgcttgccattttttatgtaaacctttataaatgtgttgca 6280490  T
Q  572 aatttatttttcctagactttataataatcttgtctccaccact 615  Q
    ||||| ||||  | |||||||||||||||| || |||| |||||    
T  6280491 aattttttttgtccagactttataataatcctggctccgccact 6280534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 476 - 549
Target Start/End: Original strand, 46685819 - 46685891
Alignment:
Q  476 aatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatg 549  Q
    |||||||||||||||  |||||||||| || |||||||||| ||||||| |||||||| |||||||||||||||    
T  46685819 aatttcttatataaactcctataaatttgacaatttctttatatttttt-attatttgtttgcaatttcttatg 46685891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 483 - 582
Target Start/End: Original strand, 47315147 - 47315246
Alignment:
Q  483 tatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaatttattttt 582  Q
    |||||||| | ||| |||||| | |||||| |||  ||||||||||||||  ||||||||||||||||||| ||  |||||||||||| ||||| |||||    
T  47315147 tatataaacctctaaaaattgaacaatttccttaatttttttgattatttatttgcaatttcttatgtaaactcctataaatatgttgcaattttttttt 47315246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 474 - 617
Target Start/End: Original strand, 19644361 - 19644506
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttcttt-agattttttg-attatttgcttgcaatttcttatgtaaattctgataaatatgttgg 571  Q
    ||||||| |||||||||||  ||||||||| | ||||| ||| |||||||||| |||||||| |||||||||||||||||| | |  |||||| ||||      
T  19644361 tgaattttttatataaatctttataaattgaacaattttttttagattttttggattatttgattgcaatttcttatgtaattccctataaatgtgttac 19644460  T
Q  572 aatttatttttcctagactttataataatcttgtctccaccactga 617  Q
    ||||| |||| ||   |||||| ||||||| || |||| |||||||    
T  19644461 aattttttttgcccgaactttacaataatcctgactccgccactga 19644506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 582
Target Start/End: Original strand, 36826021 - 36826096
Alignment:
Q  507 aatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaatttattttt 582  Q
    |||||||||| ||||||| || ||||||||||| |||||||||||||  |  |||||| ||||| ||||| |||||    
T  36826021 aatttctttaaattttttaatgatttgcttgcagtttcttatgtaaacccctataaatgtgttgcaattttttttt 36826096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 616
Target Start/End: Complemental strand, 50663235 - 50663092
Alignment:
Q  467 attcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatat 566  Q
    |||| ||| ||||||||||||||| || ||||||||| | |||||||||  ||||||||        ||| |||||||||||||||| ||  |||||| |    
T  50663235 attcctctaaatttcttatataaacccttataaattgaaaaatttctttgtattttttg--------cttccaatttcttatgtaaactcctataaatgt 50663144  T
Q  567 gttggaatttattttt--cctagactttataataatcttgtctccaccactg 616  Q
    | || || || |||||  || ||||||||||||||||||| |||| ||||||    
T  50663143 gatgcaaatttttttttgcccagactttataataatcttggctccgccactg 50663092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 495 - 538
Target Start/End: Complemental strand, 54378656 - 54378613
Alignment:
Q  495 tataaattggataatttctttagattttttgattatttgcttgc 538  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||    
T  54378656 tataaattggacaatttatttagattttttgattatttgtttgc 54378613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 4e-34; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 464 - 582
Target Start/End: Original strand, 28750674 - 28750792
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 563  Q
    ||||||||||||||||||||||||||| |||||||||||||  ||||||||||  ||||||||||||||||||| ||||||||||||||| ||| |||||    
T  28750674 taaattcttctgaatttcttatataaacccctataaattgggcaatttctttaatttttttgattatttgcttgtaatttcttatgtaaactcttataaa 28750773  T
Q  564 tatgttggaatttattttt 582  Q
    | ||||| ||||| |||||    
T  28750774 tgtgttgcaattttttttt 28750792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 464 - 616
Target Start/End: Complemental strand, 34103789 - 34103638
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 563  Q
    ||||||| ||||||||||||||||||| || ||||||||||  |||||||||||||||||| |||||||| |||||||||||||||||||   |  ||||    
T  34103789 taaattcctctgaatttcttatataaacccgtataaattgggaaatttctttagatttttt-attatttgtttgcaatttcttatgtaaacctttgtaaa 34103691  T
Q  564 tatgttggaatttatttttcctagactttataataatcttgtctccaccactg 616  Q
    | ||||| |||||||||| ||||| ||||||||||||| || |||| ||||||    
T  34103690 tgtgttgcaatttattttgcctaggctttataataatcctggctccgccactg 34103638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 464 - 553
Target Start/End: Original strand, 13103142 - 13103231
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    ||||||| ||||||||||||||||||| |  ||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||    
T  13103142 taaattcctctgaatttcttatataaacctttataaattgggcaatttctttagattttttgattatttgcttgcaatttctaatgtaaa 13103231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 474 - 617
Target Start/End: Complemental strand, 11279634 - 11279493
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaat-tctgataaatatgttgga 572  Q
    ||||||| |||||||||| | |||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||| |    
T  11279634 tgaattttttatataaattcttataaatttggtaatttctttagatttttt-attatttgcttgcaatttcttatgtaaatctct-ataaatgtgttgca 11279537  T
Q  573 atttatttttcctagactttataataatcttgtctccaccactga 617  Q
    |||| |||| || || ||||||||||||  || ||||||||||||    
T  11279536 attt-ttttccccaggctttataataattctggctccaccactga 11279493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 474 - 615
Target Start/End: Complemental strand, 11212765 - 11212625
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaa 573  Q
    ||||||| || ||||||||||||||||||||  |||||||||||||||||  |||||||||||| ||||||||||||||||||  |||||| |||||  |    
T  11212765 tgaattttttctataaatccctataaattgggcaatttctttagattttta-attatttgcttgtaatttcttatgtaaattcctataaatgtgttgcga 11212667  T
Q  574 tttatttttcctagactttataataatcttgtctccaccact 615  Q
    ||| ||||||| |  | ||||||||||  || ||||||||||    
T  11212666 tttttttttcccaatccttataataattctggctccaccact 11212625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 14309832 - 14309908
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    |||||||||||||||||||||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  14309832 tgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 14309908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 472 - 553
Target Start/End: Complemental strand, 27863795 - 27863715
Alignment:
Q  472 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    ||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||    
T  27863795 tctgaatttcttatataaacccttataaattggacaatttctttagatttttt-attatttgtttgcaatttcttatgtaaa 27863715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 9231888 - 9231964
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  9231888 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 9231964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 24694685 - 24694761
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    |||||||||||||||||  ||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  24694685 tgaatttcttatataaactcctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 24694761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 507 - 593
Target Start/End: Original strand, 24500767 - 24500853
Alignment:
Q  507 aatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaatttatttttcctagacttta 593  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||  || |||||| ||||| ||||| |||| || ||||||||    
T  24500767 aatttctttagatttttttattatttgcttgcaatttcatatgtaaacccttataaatgtgttgtaattttttttgcccagacttta 24500853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 13627634 - 13627558
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| ||||||||||||   |||||||||| ||||||| |||||||||||| | |||||||||||    
T  13627634 tgaatttcttatataaacccctataaattgagcaatttctttacatttttt-attatttgcttgtactttcttatgta 13627558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 474 - 543
Target Start/End: Original strand, 1727967 - 1728035
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaattt 543  Q
    ||||||||||||||||| ||||||||||||   |||||||||| ||||||| ||||||| ||||||||||    
T  1727967 tgaatttcttatataaacccctataaattgagcaatttctttacatttttt-attatttccttgcaattt 1728035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 501 - 553
Target Start/End: Complemental strand, 7517083 - 7517031
Alignment:
Q  501 ttggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    ||||| ||||| |||||||||||| || ||||||||||||||||||| |||||    
T  7517083 ttggacaatttttttagatttttttatcatttgcttgcaatttcttaagtaaa 7517031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 464 - 504
Target Start/End: Original strand, 24497598 - 24497638
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattgg 504  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  24497598 taaattcctctgaatttcttatataaacccctataaattgg 24497638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 551
Target Start/End: Complemental strand, 11084661 - 11084628
Alignment:
Q  518 attttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||| ||||||||||||||||||||||||||    
T  11084661 atttttttattatttgcttgcaatttcttatgta 11084628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 4e-34; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 472 - 601
Target Start/End: Complemental strand, 11856391 - 11856261
Alignment:
Q  472 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttgg 571  Q
    ||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||| ||  ||||||||||||     
T  11856391 tctgaatttcttatataaatcactataaattgggcaatttctttagattttttgattatttacttgcaatttcttatgtaaactcctataaatatgttgc 11856292  T
Q  572 aatt-tatttttcctagactttataataatc 601  Q
    |||| | |||| || || |||||||||||||    
T  11856291 aattattttttgcccaggctttataataatc 11856261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 474 - 553
Target Start/End: Original strand, 9738017 - 9738096
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  9738017 tgaatttcttatataaatccctataaattggacaatttctttagattttttgtttatttgcttgcaatttcttatgtaaa 9738096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 474 - 617
Target Start/End: Original strand, 8456997 - 8457141
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaa 573  Q
    ||||||||||||||||  |||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||  |  |||||||||||| ||    
T  8456997 tgaatttcttatataaccccctataaattgggcaatttctttagatttttttattatttgcttgcaatttcttatgtaaacccctataaatatgttgcaa 8457096  T
Q  574 tttattttt-cctagactttataataatcttgtctccaccactga 617  Q
    ||| ||||| ||  | ||||| |||||||||| |||| |||||||    
T  8457097 tttttttttgcccgggctttacaataatcttggctccgccactga 8457141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 464 - 553
Target Start/End: Original strand, 614416 - 614505
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    ||||||| ||||||||| ||||||||||||||||||||| |  |||||||||||||||||| ||||||||||||||||||||||||||||    
T  614416 taaattcctctgaattttttatataaatccctataaatttggcaatttctttagatttttttattatttgcttgcaatttcttatgtaaa 614505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 474 - 582
Target Start/End: Complemental strand, 10081239 - 10081131
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaa 573  Q
    ||||||||||||||||| |||||||||||||  |||||||||||||||||| ||||||||||| |||||||||||||||| ||  |||||| ||||| ||    
T  10081239 tgaatttcttatataaacccctataaattgggcaatttctttagatttttttattatttgcttacaatttcttatgtaaactcctataaatgtgttgcaa 10081140  T
Q  574 tttattttt 582  Q
    ||| |||||    
T  10081139 ttttttttt 10081131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 464 - 553
Target Start/End: Complemental strand, 42119726 - 42119637
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    ||||||| ||||||||||||||||||| | |||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||||||    
T  42119726 taaattcctctgaatttcttatataaacctctataaattggacaatttctttagatttttttattatttgtttgtaatttcttatgtaaa 42119637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 464 - 570
Target Start/End: Complemental strand, 6174850 - 6174743
Alignment:
Q  464 taaattcttctgaatttcttatataaatccc--tataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgata 561  Q
    ||||||||||||||||||||||||||| |||  ||||||||||| |||||||||| ||||||| ||||||||||||||||||| ||||||||  |  |||    
T  6174850 taaattcttctgaatttcttatataaacccccctataaattggacaatttctttatatttttt-attatttgcttgcaatttcctatgtaaacccccata 6174752  T
Q  562 aatatgttg 570  Q
    |||||||||    
T  6174751 aatatgttg 6174743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 464 - 548
Target Start/End: Original strand, 39862511 - 39862594
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttat 548  Q
    ||||||| | ||||||||||||||||| |||||||||||||  |||||||||||||||||| |||||||||||||||||||||||    
T  39862511 taaattcctatgaatttcttatataaacccctataaattgggcaatttctttagatttttt-attatttgcttgcaatttcttat 39862594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 23218579 - 23218503
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  23218579 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 23218503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 476 - 553
Target Start/End: Original strand, 25560363 - 25560440
Alignment:
Q  476 aatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    |||||||||||||||   |||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||    
T  25560363 aatttcttatataaacatctataaattggacaatttctttagattattttattatttgcttgcaatttcttatgtaaa 25560440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 37169067 - 37169143
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  37169067 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 37169143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 38397692 - 38397616
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  38397692 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 38397616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 474 - 601
Target Start/End: Original strand, 33271304 - 33271431
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttg-ga 572  Q
    ||||||||||||||||| | |||||||||||| |||||||||| ||||||| |||||||| ||| |||||||||| ||||  |  |||||||| |||  |    
T  33271304 tgaatttcttatataaacctctataaattggacaatttctttatatttttt-attatttgtttgtaatttcttatataaacccctataaatatattgcaa 33271402  T
Q  573 atttatttttcctagactttataataatc 601  Q
    |||| |||| |||||||||||||||||||    
T  33271403 atttgttttgcctagactttataataatc 33271431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 464 - 543
Target Start/End: Complemental strand, 10115264 - 10115185
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaattt 543  Q
    ||||||| |||| |||||||||||||| ||| ||||||| || |||||||||||||||||| ||||||||||||||||||    
T  10115264 taaattcctctggatttcttatataaaccccaataaattagacaatttctttagattttttaattatttgcttgcaattt 10115185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 464 - 601
Target Start/End: Complemental strand, 27916244 - 27916105
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa-ttctgataa 562  Q
    ||||||| |||||||||||||||||||  |||||||||||   |||||| ||||||||||| |||||||| |||||||||||||| ||||  ||  ||||    
T  27916244 taaattcctctgaatttcttatataaactcctataaattgagcaatttcattagatttttttattatttgtttgcaatttcttatataaacctcctataa 27916145  T
Q  563 atatgttggaatttattttt-cctagactttataataatc 601  Q
    || ||||| || |||||||| || | ||||||||||||||    
T  27916144 atgtgttgcaaattatttttgcccaaactttataataatc 27916105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 15631708 - 15631631
Alignment:
Q  474 tgaatttcttatataaatccc-tataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| ||| ||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  15631708 tgaatttcttatataaaccccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgta 15631631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 16618604 - 16618680
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    |||||||||||||||||  ||||||||||||| ||||| |||| ||||||| ||||||||||||||||||||||||||    
T  16618604 tgaatttcttatataaactcctataaattggacaatttttttatatttttt-attatttgcttgcaatttcttatgta 16618680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 464 - 553
Target Start/End: Original strand, 36769098 - 36769186
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    ||||||| ||||||||||||||||||| | |||| |||| |  |||||||||||| ||||||||||||||||||||||||| ||||||||    
T  36769098 taaattcctctgaatttcttatataaacctctatgaattaggcaatttctttaga-tttttgattatttgcttgcaatttcatatgtaaa 36769186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 474 - 582
Target Start/End: Original strand, 29491448 - 29491554
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaa 573  Q
    ||||||||||||||||  |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| |||  |  |||||| ||||| ||    
T  29491448 tgaatttcttatataac-ccctataaattggacaatt-ctttaaattttttgattatttgcttgcaatttcttatgcaaacacatataaatgtgttgcaa 29491545  T
Q  574 tttattttt 582  Q
    ||| |||||    
T  29491546 ttttttttt 29491554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 474 - 548
Target Start/End: Original strand, 6257444 - 6257517
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttat 548  Q
    ||||||||||||| ||| |||||||||||||  |||||||||| ||||||| |||||||||||||||||||||||    
T  6257444 tgaatttcttatacaaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttat 6257517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 464 - 552
Target Start/End: Original strand, 29790243 - 29790329
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaa 552  Q
    ||||||||| ||||||||||||||||| |  ||||||||||  |||||||||||  |||||||||||||||||  ||||||||||||||    
T  29790243 taaattcttatgaatttcttatataaacctttataaattgggcaatttctttag--tttttgattatttgcttttaatttcttatgtaa 29790329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 507 - 617
Target Start/End: Original strand, 10052599 - 10052710
Alignment:
Q  507 aatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaatttatttttcct-agactttataataatcttgt 605  Q
    |||||||||| | ||||  ||||||||||||||||||||||||||||  |  |||||||||||| ||||| ||||| || | |||||||||||||  ||     
T  10052599 aatttctttaaaattttaaattatttgcttgcaatttcttatgtaaaagcctataaatatgttgcaatttttttttgctcaaactttataataattctgg 10052698  T
Q  606 ctccaccactga 617  Q
    ||||||||||||    
T  10052699 ctccaccactga 10052710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 482 - 553
Target Start/End: Original strand, 3341162 - 3341232
Alignment:
Q  482 ttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    ||||||||  |||||||||||||  ||||||||||| |||| ||||||||||||| |||||| |||||||||    
T  3341162 ttatataatcccctataaattgggaaatttctttagctttt-tgattatttgctttcaattttttatgtaaa 3341232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 472 - 546
Target Start/End: Original strand, 10052532 - 10052606
Alignment:
Q  472 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttctt 546  Q
    |||||| | ||||||||||   ||||||||| | ||||||||||| | |||| ||||||||||||||||||||||    
T  10052532 tctgaactacttatataaacgtctataaattaggtaatttctttaaaattttagattatttgcttgcaatttctt 10052606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 476 - 554
Target Start/End: Original strand, 15475430 - 15475508
Alignment:
Q  476 aatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaat 554  Q
    ||||| |||||||||||  ||||||||| | |||||||||| ||||||  ||||||| || | ||||||||||||||||    
T  15475430 aattttttatataaatctatataaattgaaaaatttctttaaatttttgtattattttctcgtaatttcttatgtaaat 15475508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 6145174 - 6145218
Alignment:
Q  126 gtgttgatatatagttgttgttatggcgtgcaggcatgtaagaag 170  Q
    |||||||||||| ||||||||||||||||||| ||| ||||||||    
T  6145174 gtgttgatatatggttgttgttatggcgtgcatgcaggtaagaag 6145218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 476 - 528
Target Start/End: Original strand, 19322058 - 19322110
Alignment:
Q  476 aatttcttatataaatccctataaattggataatttctttagattttttgatt 528  Q
    |||||||||||||||  ||||||||||||  |||| |||||||||||||||||    
T  19322058 aatttcttatataaactcctataaattgggcaattactttagattttttgatt 19322110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 498 - 600
Target Start/End: Complemental strand, 22903329 - 22903226
Alignment:
Q  498 aaattggataatttctttagattttttgattattt--gcttgcaatttcttatgtaaa-ttctgataaatatgttggaatttatttttcctagactttat 594  Q
    |||||||  ||||||||||| |||||| ||| |||  |||||||||||||||||||||  ||| |||||| ||||| ||||| ||||||| || ||||||    
T  22903329 aaattgggcaatttctttagttttttttattctttttgcttgcaatttcttatgtaaacctct-ataaatgtgttgcaattt-tttttcccaggctttat 22903232  T
Q  595 aataat 600  Q
    ||||||    
T  22903231 aataat 22903226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 6120093 - 6120162
Alignment:
Q  22 taactatgtttacacttcacccacatgacaatcatctacattccattgctttcattttatcatattatta 91  Q
    |||||||||||||| | || | ||| ||||||||||||  ||| ||| |||||||||||||| |||||||    
T  6120093 taactatgtttacattccagcaacacgacaatcatctattttcaattactttcattttatcaaattatta 6120162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 32621045 - 32621118
Alignment:
Q  18 attttaactatgtttacacttcacccacatgacaatcatctacattccattgctttcattttatcatattatta 91  Q
    |||||||||||||||||| | || | ||| |||||||||||| || | ||| |||| ||||||||| |||||||    
T  32621045 attttaactatgtttacattccagcaacacgacaatcatctatatccaattacttttattttatcaaattatta 32621118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 1e-31; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 475 - 616
Target Start/End: Original strand, 322584 - 322726
Alignment:
Q  475 gaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaat 574  Q
    |||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||  |   ||||| ||||| |||    
T  322584 gaatttcttatataaacccctataaattggacaatttctttaaattttttgattatttgcttgcaatttcttatgtaaacacctgtaaatgtgttgcaat 322683  T
Q  575 ttattttt-cctagactttataataatcttgtctccaccactg 616  Q
    || ||||| || ||||||| |||||||| || |||| ||||||    
T  322684 ttttttttgcccagactttgtaataatcctggctccgccactg 322726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 464 - 582
Target Start/End: Original strand, 17888574 - 17888692
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 563  Q
    ||||||| | ||||||||||||||||  |||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||  |  |||||    
T  17888574 taaattcctatgaatttcttatataaccccctataaattgggcaatttctttagatttttttattatttgcttgcaatttcttatgtaaacccctataaa 17888673  T
Q  564 tatgttggaatttattttt 582  Q
    | ||||| ||| |||||||    
T  17888674 tgtgttgcaatatattttt 17888692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 464 - 553
Target Start/End: Original strand, 9742557 - 9742646
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    ||||||| |||||||||||||||| || |||||||||||||  |||||||||||||||||||||||||| | ||||||||||||||||||    
T  9742557 taaattcctctgaatttcttatattaacccctataaattgggcaatttctttagattttttgattattttcatgcaatttcttatgtaaa 9742646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 461 - 553
Target Start/End: Original strand, 35322725 - 35322817
Alignment:
Q  461 atataaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    |||||||||  ||||||| ||||||||||| | |||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||    
T  35322725 atataaatttctctgaatctcttatataaacctctataaattgaacaatttctttagattttttgattatttgcttgcaatttcttatataaa 35322817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 472 - 542
Target Start/End: Original strand, 10094425 - 10094495
Alignment:
Q  472 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatt 542  Q
    ||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  10094425 tctgaatttcttatataaacccctataaattgggtaatttatttagattttttgattatttgcttgcaatt 10094495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 464 - 614
Target Start/End: Complemental strand, 46474098 - 46473948
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 563  Q
    ||||||| | ||||||| ||||||||| || ||||||||| | |||||||||||||||||  |||||||||||| |||||||||||||||| || |||||    
T  46474098 taaattcctgtgaattttttatataaacccatataaattgtacaatttctttagatttttgtattatttgcttgtaatttcttatgtaaatccttataaa 46473999  T
Q  564 tatgttggaatttatttttcctagactttataataatcttgtctccaccac 614  Q
    | ||||| ||  | |||| || |||||||| ||||||| || |||| ||||    
T  46473998 tgtgttgcaaaattttttacccagactttacaataatcctggctccgccac 46473948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 474 - 553
Target Start/End: Complemental strand, 20818661 - 20818582
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    |||||||||||||||||  ||||||||||||  ||||| ||||||||||||||||||||| |||||||||||||||||||    
T  20818661 tgaatttcttatataaactcctataaattggtcaatttttttagattttttgattatttgtttgcaatttcttatgtaaa 20818582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 464 - 546
Target Start/End: Original strand, 16338237 - 16338318
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttctt 546  Q
    ||||||| | ||||||| |||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||    
T  16338237 taaattcctatgaattttttatataaatccctataaattggacaatttctttacatttttt-attatttgcttgcaatttctt 16338318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 1535865 - 1535789
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  1535865 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 1535789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 472 - 553
Target Start/End: Original strand, 12792263 - 12792344
Alignment:
Q  472 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    ||||||||||||||||||| |||||||||||||  |||| |||||||||||| ||||||||||||| |||||||||| ||||    
T  12792263 tctgaatttcttatataaacccctataaattgggcaattactttagatttttagattatttgcttgaaatttcttatataaa 12792344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 34241087 - 34241011
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  34241087 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 34241011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 464 - 604
Target Start/End: Complemental strand, 50328900 - 50328759
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 563  Q
    ||||||| ||| ||||||||||||||| | |||||||||||| |||||||||| ||||||| ||||||  |||||||||| |||||||||  || |||||    
T  50328900 taaattcctcttaatttcttatataaacctctataaattggacaatttctttaaatttttttattattcacttgcaattttttatgtaaacccttataaa 50328801  T
Q  564 tatgttg-gaatttatttttcctagactttataataatcttg 604  Q
    | |||||  ||| | |||| || | |||||||||||||||||    
T  50328800 tgtgttgcaaatattttttgcccaaactttataataatcttg 50328759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 52632612 - 52632536
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    |||||||||||||||||||||||||||||||  |||||||||| ||||||| | ||||||||||||||||||||||||    
T  52632612 tgaatttcttatataaatccctataaattgggcaatttctttacatttttt-aatatttgcttgcaatttcttatgta 52632536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 464 - 551
Target Start/End: Complemental strand, 25954854 - 25954768
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||| | |||||||||||||||||  ||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  25954854 taaattcctatgaatttcttatataaactcctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 25954768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 474 - 553
Target Start/End: Complemental strand, 31377484 - 31377405
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    ||||||||||||||||  | |||||||||||  |||||||||||||||||| | ||||||||||||||||||||||||||    
T  31377484 tgaatttcttatataaccctctataaattgggcaatttctttagattttttaactatttgcttgcaatttcttatgtaaa 31377405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 35019030 - 35018954
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| || |||||||| | ||||||||||| ||||||| ||||||||||||||||||||||||||    
T  35019030 tgaatttcttatataaacccttataaattaggtaatttctttacatttttt-attatttgcttgcaatttcttatgta 35018954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 36012219 - 36012295
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| |||||||||||||||||| |||||||    
T  36012219 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaattttttatgta 36012295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 37801298 - 37801374
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||| |||||||||||||||||||||||  || ||||||| ||||||| ||||||||||||||||||||||||||    
T  37801298 tgaattttttatataaatccctataaattgggcaaattctttacatttttt-attatttgcttgcaatttcttatgta 37801374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 46583575 - 46583651
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| ||||||||||| |  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  46583575 tgaatttcttatataaacccctataaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 46583651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 49284451 - 49284375
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| |||||||| |||||||||||||||||    
T  49284451 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgtttgcaatttcttatgta 49284375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 464 - 556
Target Start/End: Original strand, 19124762 - 19124854
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattc 556  Q
    ||||||| |||||||||||||||||||   || |||||||   |||||||||| ||||||| ||||||| ||| |||||||||||||||||||    
T  19124762 taaattcctctgaatttcttatataaacatctgtaaattgatcaatttctttaaatttttttattatttacttacaatttcttatgtaaattc 19124854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 472 - 524
Target Start/End: Complemental strand, 47084108 - 47084056
Alignment:
Q  472 tctgaatttcttatataaatccctataaattggataatttctttagatttttt 524  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  47084108 tctgaatttcttatataaacccctataaattgggtaatttctttagatttttt 47084056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 507 - 553
Target Start/End: Complemental strand, 24992014 - 24991968
Alignment:
Q  507 aatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||    
T  24992014 aatttctttagattttatgattatttgctggcaatttcttatgtaaa 24991968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 472 - 604
Target Start/End: Complemental strand, 54090276 - 54090144
Alignment:
Q  472 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaa-tttcttatgtaaattctgataaatatgttg 570  Q
    ||||||||| |||||||||  | ||||||||||  ||||| |||||||||||| ||||||||||||||| ||| |||||||||  || ||| || |||||    
T  54090276 tctgaatttattatataaactcttataaattgggcaatttttttagatttttt-attatttgcttgcaatttttttatgtaaaccct-atagatgtgttg 54090179  T
Q  571 gaatttattttt-cctagactttataataatcttg 604  Q
     ||||| ||||| || | |||||||||||||||||    
T  54090178 caatttttttttgcccatactttataataatcttg 54090144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 5780790 - 5780846
Alignment:
Q  476 aatttcttatataaatccctataaattggataatttctttagattttttgattattt 532  Q
    |||||||||||||||||| ||||||||||  |||||||||| ||||||| |||||||    
T  5780790 aatttcttatataaatccttataaattgggcaatttctttaaatttttttattattt 5780846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 474 - 553
Target Start/End: Complemental strand, 11054550 - 11054468
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttaga---ttttttgattatttgcttgcaatttcttatgtaaa 553  Q
    ||||||||||||||||| | |||||||||||  ||| |||||||    ||||||  |||||||||||||||||||||||||||    
T  11054550 tgaatttcttatataaacctctataaattgggcaatctctttagtattttttttatttatttgcttgcaatttcttatgtaaa 11054468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 507 - 551
Target Start/End: Original strand, 16338311 - 16338354
Alignment:
Q  507 aatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||    
T  16338311 aatttctttacatttttt-attatttgcttgcaatttcttatgta 16338354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 476 - 553
Target Start/End: Complemental strand, 33982096 - 33982017
Alignment:
Q  476 aatttcttatataaatccctataaattggataatttctttagattttttgatta--tttgcttgcaatttcttatgtaaa 553  Q
    |||||||||||||||  | |||||||| ||||||||||||||||| | | | ||  |||||||||||||| |||||||||    
T  33982096 aatttcttatataaactcttataaattagataatttctttagattgtattaatatttttgcttgcaattttttatgtaaa 33982017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 6e-30; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 474 - 616
Target Start/End: Original strand, 33057691 - 33057833
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaa 573  Q
    ||||||||||||||||  |||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||| || |||||| ||||| ||    
T  33057691 tgaatttcttatataatcccctataaattgaacaatttctttagatttttttattatttgcttgcaatttcttatgtaaatcct-ataaatgtgttgcaa 33057789  T
Q  574 tttattttt-cctagactttataataatcttgtctccaccactg 616  Q
    ||| |||||  | |||||||| ||||||| || |||| ||||||    
T  33057790 tttttttttatccagactttacaataatcctgactcctccactg 33057833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 464 - 615
Target Start/End: Complemental strand, 10334282 - 10334130
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 563  Q
    ||||||| |||||||||||||||||||  | ||||||||||  ||||||||||||| |||| | ||||||||||||||||||||||||||  |  |||||    
T  10334282 taaattcctctgaatttcttatataaactcttataaattgggcaatttctttagatatttttaatatttgcttgcaatttcttatgtaaacccctataaa 10334183  T
Q  564 tatgttggaatttatttttcct-agactttataataatcttgtctccaccact 615  Q
    | ||||| |||||  |||| || |||||||||||||||| || |||| |||||    
T  10334182 tgtgttgcaattttcttttgctcagactttataataatcctgactccgccact 10334130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 464 - 551
Target Start/End: Original strand, 29555963 - 29556049
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||| | ||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  29555963 taaattcctatgaatttcttatataaacccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgta 29556049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 32876564 - 32876640
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  32876564 tgaatttcttatataaacccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgta 32876640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 474 - 553
Target Start/End: Original strand, 19334594 - 19334674
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttaga-ttttttgattatttgcttgcaatttcttatgtaaa 553  Q
    ||||||||||||||||| |||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||| ||||    
T  19334594 tgaatttcttatataaacccctataaattggacaatttctttagattttttttattatttgcttgcaatttcttatataaa 19334674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 10576767 - 10576691
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  10576767 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 10576691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 34259612 - 34259536
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  34259612 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 34259536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 34707210 - 34707134
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  34707210 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 34707134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 44164777 - 44164853
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  44164777 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 44164853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 475 - 551
Target Start/End: Original strand, 24320474 - 24320549
Alignment:
Q  475 gaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    |||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  24320474 gaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 24320549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 464 - 553
Target Start/End: Original strand, 17303138 - 17303228
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttaga-ttttttgattatttgcttgcaatttcttatgtaaa 553  Q
    ||||||| | ||||||||||||||||| || | ||||||||  |||||||||||| |||||| ||||||||||||||||||||||||||||    
T  17303138 taaattcctatgaatttcttatataaacccttgtaaattgggcaatttctttagattttttttattatttgcttgcaatttcttatgtaaa 17303228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 29238177 - 29238253
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| ||||| |||||||| |||||||||| ||||||| ||||||||||| ||||||||||||||    
T  29238177 tgaatttcttatataaacccctaaaaattggaaaatttctttacatttttt-attatttgcttacaatttcttatgta 29238253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 29981147 - 29981223
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    |||||||||||||||||   |||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  29981147 tgaatttcttatataaacttctataaattggacaatttctttatatttttt-attatttgcttgcaatttcttatgta 29981223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 473 - 546
Target Start/End: Complemental strand, 9770754 - 9770682
Alignment:
Q  473 ctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttctt 546  Q
    |||||||||||||||||| | |||| ||||||| ||||||||||||  ||||||||||||||||||||||||||    
T  9770754 ctgaatttcttatataaaccactatgaattggacaatttctttaga-cttttgattatttgcttgcaatttctt 9770682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 476 - 617
Target Start/End: Complemental strand, 41853226 - 41853081
Alignment:
Q  476 aatttcttatataaatccctataaattggataatttctttagatt-ttttgattatttgcttgcaatttcttatgtaaa-ttctgataaatatgttggaa 573  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||| |||||||||||||||||||||||  ||| ||||  ||| |||||| ||||| ||    
T  41853226 aatttcttatttaaattcctataagttggacaatttttttagatttttttgattatttgcttgcaattttctatataaacctct-ataaatgtgttgcaa 41853128  T
Q  574 tttatttttc---ctagactttataataatcttgtctccaccactga 617  Q
    ||| ||||||   | |||||||||||||||| || |||| |||||||    
T  41853127 tttttttttctggccagactttataataatcctggctccgccactga 41853081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 495 - 616
Target Start/End: Original strand, 26284433 - 26284556
Alignment:
Q  495 tataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaatttattttt---cctagactt 591  Q
    ||||||||||| |||||||||||||||||| ||||||| ||||||||||||| ||||||  |  |||||| ||||| ||||| |||||   || | ||||    
T  26284433 tataaattggacaatttctttagatttttt-attattttcttgcaatttcttttgtaaacccctataaatgtgttgcaatttttttttttgcccaaactt 26284531  T
Q  592 tataataatcttgtctccaccactg 616  Q
    ||||| |||| || |||||||||||    
T  26284532 tataacaatcctggctccaccactg 26284556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 507 - 615
Target Start/End: Original strand, 2702287 - 2702395
Alignment:
Q  507 aatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaatttatttttcctagactttataataatcttgtc 606  Q
    ||||| |||||||||||| ||||||| | ||||||||||||||||||  |  | |||||||||| || || ||||||| |  ||||||||||||| || |    
T  2702287 aatttttttagatttttttattattttcatgcaatttcttatgtaaacccataaaaatatgttgcaaattttttttcccaagctttataataatcctgac 2702386  T
Q  607 tccaccact 615  Q
    |||||||||    
T  2702387 tccaccact 2702395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 464 - 524
Target Start/End: Complemental strand, 15017877 - 15017817
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagatttttt 524  Q
    ||||||| |||||||||||||||||||  | ||||||||||| ||||||||||||||||||    
T  15017877 taaattcctctgaatttcttatataaacgcgtataaattggacaatttctttagatttttt 15017817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 501 - 554
Target Start/End: Original strand, 23032186 - 23032239
Alignment:
Q  501 ttggataatttctttagattttttgattatttgcttgcaatttcttatgtaaat 554  Q
    ||||| ||||||||||||||||||||||||||||||| ||||| |||| |||||    
T  23032186 ttggacaatttctttagattttttgattatttgcttgtaattttttatctaaat 23032239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 528 - 616
Target Start/End: Original strand, 25128163 - 25128251
Alignment:
Q  528 tatttgcttgcaatttcttatgtaaattctgataaatatgttggaatttatttttcctagactttataataatcttgtctccaccactg 616  Q
    ||||||| ||||||||||||||||||  |  |||||||||||| || || ||||  | | |||||||||||||| || |||||||||||    
T  25128163 tatttgcatgcaatttcttatgtaaacccatataaatatgttgcaaatttttttgtccaaactttataataatcctggctccaccactg 25128251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 472 - 600
Target Start/End: Original strand, 34484 - 34612
Alignment:
Q  472 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttgg 571  Q
    ||||||||  ||||||||||| |||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||| ||  |||||  |||||     
T  34484 tctgaattctttatataaatctctataaattggacagtttctttagattttttgattatttgcttacaatttcttatgtaaactcctataaacgtgttgt 34583  T
Q  572 aatttatttttcctagactttataataat 600  Q
    ||||| |||| || ||| |||||||||||    
T  34584 aattttttttgcccagattttataataat 34612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 482 - 600
Target Start/End: Original strand, 34697431 - 34697550
Alignment:
Q  482 ttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaat-ttattt 580  Q
    ||||||||||| ||||||||||   ||||||||||  |||||| |||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||    
T  34697431 ttatataaatctctataaattgagaaatttctttaattttttttattatttgcttgcaatttcttatgtaaattcttataaatatgttgcaatattattt 34697530  T
Q  581 ttcctagactttataataat 600  Q
    | || | |||||||||||||    
T  34697531 tgcccaaactttataataat 34697550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 464 - 554
Target Start/End: Original strand, 43282875 - 43282965
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaat 554  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||  |||| ||||||||||||| |||||||||||||||    
T  43282875 taaattcttctgaatttattatataaatccctataaattgggtaatttcattagaaatttttattatttgcttgctatttcttatgtaaat 43282965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 26021490 - 26021413
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| ||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||    
T  26021490 tgaatttcttatataaacccctataaattgggtaatttctttacatttttttattatttgcttgcaatttcttatgta 26021413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 461 - 601
Target Start/End: Complemental strand, 19334890 - 19334751
Alignment:
Q  461 atataaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgat 560  Q
    |||||||||||| ||||||| ||||||||| | ||||||||| || |||||||||| ||| ||| ||||||||||| |||||||||||||||   || ||    
T  19334890 atataaattcttatgaattttttatataaacctctataaattagacaatttctttaaattgttttattatttgcttacaatttcttatgtaacccct-at 19334792  T
Q  561 aaatatgttggaatttatttttcctagactttataataatc 601  Q
    |||||||||| || || ||||| | ||||||||||||||||    
T  19334791 aaatatgttgcaaatttttttttccagactttataataatc 19334751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 474 - 553
Target Start/End: Complemental strand, 42072522 - 42072444
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    ||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||    
T  42072522 tgaatttcttatataaacccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgtaaa 42072444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 21525452 - 21525376
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  21525452 tgaatttcttatataaacccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgta 21525376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 464 - 601
Target Start/End: Complemental strand, 10112151 - 10112013
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 563  Q
    ||||||| ||| |||||||||||||||  | ||||||||||| |||||||||  |||||||||||||||  |||||||||||||||||||  |  |||||    
T  10112151 taaattcctcttaatttcttatataaactcttataaattggacaatttcttttaattttttgattatttatttgcaatttcttatgtaaacccctataaa 10112052  T
Q  564 tatgttggaa-tttatttttcctagactttataataatc 601  Q
    ||||||| || |||||| | | ||| |||||||||||||    
T  10112051 tatgttgcaattttattatgcgtaggctttataataatc 10112013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 464 - 554
Target Start/End: Complemental strand, 21488170 - 21488081
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaat 554  Q
    ||||||| | ||||||||||||| ||| ||| |||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||    
T  21488170 taaattcctttgaatttcttatagaaaccccgataaattggacaatttctttagatttttttatta-ttgcttgcaatttcttatgtaaat 21488081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 22324690 - 22324614
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  22324690 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 22324614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 35806888 - 35806812
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  35806888 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 35806812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 474 - 553
Target Start/End: Complemental strand, 24065367 - 24065289
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    |||||||||||||||||  ||||||||||||  ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  24065367 tgaatttcttatataaactcctataaattgggcaatttctttagctttttt-attatttgcttgcaatttcttatgtaaa 24065289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 464 - 551
Target Start/End: Original strand, 33934393 - 33934479
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||| | ||||||||||||||||| |||||||||||||  ||||| |||| ||||||| ||||||||||||||||||||||||||    
T  33934393 taaattcctatgaatttcttatataaacccctataaattgggcaatttttttatatttttt-attatttgcttgcaatttcttatgta 33934479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 42013966 - 42013890
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    |||||||||||||||||  ||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  42013966 tgaatttcttatataaactcctataaattgggcaatttctttatatttttt-attatttgcttgcaatttcttatgta 42013890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 30193439 - 30193508
Alignment:
Q  127 tgttgatatatagttgttgttatggcgtgcaggcatgtaagaagaaagaatgagtcattaataccatttg 196  Q
    |||||||||| |||||||||||||||||||| ||| |||||||| || |||| ||||| || ||||||||    
T  30193439 tgttgatatacagttgttgttatggcgtgcatgcaggtaagaagcaaaaatgggtcatcaacaccatttg 30193508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 473 - 524
Target Start/End: Complemental strand, 2271290 - 2271239
Alignment:
Q  473 ctgaatttcttatataaatccctataaattggataatttctttagatttttt 524  Q
    |||||||||||||||||| ||||||| ||| | |||||||||||||||||||    
T  2271290 ctgaatttcttatataaacccctatatattaggtaatttctttagatttttt 2271239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 474 - 601
Target Start/End: Original strand, 16819007 - 16819137
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttcttta--gattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttgg 571  Q
    ||||||||||||||||| ||||||||||||| |||||||| ||   | | ||| |||||||||||||||||| |||| ||||  |  |||||| |||||     
T  16819007 tgaatttcttatataaacccctataaattgggtaatttctctatctagtattttattatttgcttgcaattttttatataaacccctataaatgtgttga 16819106  T
Q  572 aatttattttt-cctagactttataataatc 601  Q
    | ||| ||||| || || |||||||||||||    
T  16819107 attttttttttgccaaggctttataataatc 16819137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 519
Target Start/End: Complemental strand, 16523200 - 16523155
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagat 519  Q
    |||||||||||||||||||||||||||||||  || ||||||||||    
T  16523200 tgaatttcttatataaatccctataaattgggcaacttctttagat 16523155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 23756599 - 23756566
Alignment:
Q  507 aatttctttagattttttgattatttgcttgcaa 540  Q
    |||||||||| |||||||||||||||||||||||    
T  23756599 aatttctttaaattttttgattatttgcttgcaa 23756566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 476 - 591
Target Start/End: Original strand, 23685406 - 23685521
Alignment:
Q  476 aatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaatt 575  Q
    |||||||||||||||||| |||||||| || ||||| |||| || |||||||||||||||||||||||||||||||||  || |||||||||||| ||||    
T  23685406 aatttcttatataaatccttataaatttgacaatttatttatatattttgattatttgcttgcaatttcttatgtaaacccttataaatatgttgcaatt 23685505  T
Q  576 tatttttcctagactt 591  Q
    | |||| || ||||||    
T  23685506 ttttttaccaagactt 23685521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 474 - 553
Target Start/End: Original strand, 1387322 - 1387400
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1387322 tgaatttcttagataaacccctataaattgggtaatttctttagatttttt-attatttgcttgcaatttcttatgtaaa 1387400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 464 - 604
Target Start/End: Complemental strand, 40780160 - 40780018
Alignment:
Q  464 taaattcttctgaatttcttatataaat-ccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataa 562  Q
    ||||||| |||||||||||||||||||  ||||||||||| || ||||| |||| ||||||| ||||||||||||||||||||||||||||     ||||    
T  40780160 taaattcctctgaatttcttatataaacaccctataaatttgacaatttttttaaattttttaattatttgcttgcaatttcttatgtaaaccgctataa 40780061  T
Q  563 atatgttggaa-tttatttttcctagactttataataatcttg 604  Q
    |||||||| || ||| ||||||| | || ||||||||||||||    
T  40780060 atatgttgcaattttttttttcccaaaccttataataatcttg 40780018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 29846536 - 29846460
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  29846536 tgaatttcttatataaacccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgta 29846460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 472 - 616
Target Start/End: Original strand, 41674738 - 41674883
Alignment:
Q  472 tctgaatttcttatataaatccctataaattggataatttctttaga-ttttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttg 570  Q
    ||||||||| ||||||||| || ||||||||||| |||||||||||| |||||| | ||||||||||||||||||||| ||||| |  |||||| |||||    
T  41674738 tctgaattttttatataaacccttataaattggacaatttctttagatttttttaactatttgcttgcaatttcttatataaatccctataaatgtgttg 41674837  T
Q  571 gaatttatttttcctagactttataataatcttgtctccaccactg 616  Q
     || || ||||||  ||||||||| |||||| || |||| ||||||    
T  41674838 caaattttttttctcagactttatgataatcctggctccgccactg 41674883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 464 - 551
Target Start/End: Complemental strand, 19181652 - 19181566
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||| | ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  19181652 taaattcctatgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 19181566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 476 - 551
Target Start/End: Original strand, 40277324 - 40277398
Alignment:
Q  476 aatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    |||||||||||||||||||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  40277324 aatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 40277398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 472 - 553
Target Start/End: Original strand, 14539736 - 14539817
Alignment:
Q  472 tctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    |||||||||||||||||||| |||||||||| |  |||||||||||||||||| ||||||| ||||||||||||||| ||||    
T  14539736 tctgaatttcttatataaattcctataaattaggcaatttctttagatttttttattattttcttgcaatttcttatataaa 14539817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 14942078 - 14942154
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  14942078 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 14942154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 464 - 616
Target Start/End: Original strand, 28321727 - 28321880
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 563  Q
    |||||||| |||||| ||||||||||| || ||||||||||  |||||| ||  ||||||||||||||||||| ||||||||||| ||||  |  |||||    
T  28321727 taaattctcctgaatatcttatataaacccttataaattgggcaatttcattgaattttttgattatttgcttccaatttcttatataaacccctataaa 28321826  T
Q  564 tatgttggaatttat-ttttcctagactttataataatcttgtctccaccactg 616  Q
    | ||||| ||||| | ||| || |||||||||||||||| || |||| ||||||    
T  28321827 tgtgttgcaatttttatttgcccagactttataataatcctggctccgccactg 28321880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 461 - 553
Target Start/End: Complemental strand, 33009780 - 33009687
Alignment:
Q  461 atataaattcttctgaatttcttatataaatccctataaattggataatttctttagattttt-tgattatttgcttgcaatttcttatgtaaa 553  Q
    |||||||| | | ||||||| |||||||||||| ||||||||||| ||||||||||||||||| | |||||||||||||||||| |||||||||    
T  33009780 atataaatccctatgaatttgttatataaatccttataaattggacaatttctttagatttttattattatttgcttgcaattttttatgtaaa 33009687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 42769792 - 42769868
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  42769792 tgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 42769868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 474 - 544
Target Start/End: Original strand, 6318492 - 6318563
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttaga-ttttttgattatttgcttgcaatttc 544  Q
    |||||||||||||||||||||||||||||||  |||||||||||| |||||| |||||||||||||||||||    
T  6318492 tgaatttcttatataaatccctataaattgggcaatttctttagattttttttattatttgcttgcaatttc 6318563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 492 - 614
Target Start/End: Complemental strand, 32486320 - 32486198
Alignment:
Q  492 ccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttggaatttatttttcctagactt 591  Q
    ||||||||||||| |||||| || ||||||||| ||||||||||||||||||||||| ||||  || |||||| ||||| ||||| |||| || | ||||    
T  32486320 ccctataaattgggtaattttttaagattttttaattatttgcttgcaatttcttatataaacacttataaatgtgttgcaattttttttacccaaactt 32486221  T
Q  592 tataataatcttgtctccaccac 614  Q
    | |||||||| || |||| ||||    
T  32486220 tgtaataatcatggctccgccac 32486198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 14186472 - 14186548
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    ||||||||||||||||| |||||||||||||  |||||||||| | ||||| ||||||||||||||||||||||||||    
T  14186472 tgaatttcttatataaacccctataaattgggcaatttctttacacttttt-attatttgcttgcaatttcttatgta 14186548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 476 - 553
Target Start/End: Complemental strand, 43139839 - 43139761
Alignment:
Q  476 aatttcttatataaatccctataaattggataatttctttagatt-ttttgattatttgcttgcaatttcttatgtaaa 553  Q
    ||||||||||||||| ||||||||||||   |||||||||||||| |||| ||||||||||||||||||||||| ||||    
T  43139839 aatttcttatataaacccctataaattgagcaatttctttagattttttttattatttgcttgcaatttcttatataaa 43139761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 476 - 547
Target Start/End: Original strand, 3597903 - 3597973
Alignment:
Q  476 aatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttctta 547  Q
    |||||||| | ||||||||||||||||||| |||||||||| ||||||| ||||||| ||||||||||||||    
T  3597903 aatttcttgtgtaaatccctataaattggacaatttctttacatttttt-attatttacttgcaatttctta 3597973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 474 - 553
Target Start/End: Complemental strand, 3956666 - 3956587
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaa 553  Q
    ||||||| ||||||||| |||| ||||||||| |||||||||| | ||||| |||||||||||||||||||  |||||||    
T  3956666 tgaatttattatataaacccctgtaaattggacaatttctttaaaattttttattatttgcttgcaatttcaaatgtaaa 3956587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 476 - 548
Target Start/End: Complemental strand, 25665316 - 25665244
Alignment:
Q  476 aatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttat 548  Q
    |||||||||||||||    |||||||||| |||||||||||  ||||||||||||||||||||||||| ||||    
T  25665316 aatttcttatataaacatttataaattgggtaatttctttaagttttttgattatttgcttgcaattttttat 25665244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 474 - 570
Target Start/End: Complemental strand, 2888135 - 2888039
Alignment:
Q  474 tgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaatatgttg 570  Q
    ||||||| |||||||||  ||||||||||| | ||||| |||||||||||| |||| ||||| ||||  |||||||||||  |  ||||||||||||    
T  2888135 tgaattttttatataaactcctataaattgaacaatttttttagatttttttattaattgctagcaaagtcttatgtaaacccctataaatatgttg 2888039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 464 - 546
Target Start/End: Complemental strand, 54623 - 54542
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttctt 546  Q
    ||||||| | ||||||| |||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||    
T  54623 taaattcctatgaattttttatataaatccctataaattggacaatttctttacatttttt-attatttgcttgcaatttctt 54542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 507 - 551
Target Start/End: Complemental strand, 54549 - 54506
Alignment:
Q  507 aatttctttagattttttgattatttgcttgcaatttcttatgta 551  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||    
T  54549 aatttctttacatttttt-attatttgcttgcaatttcttatgta 54506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 464 - 570
Target Start/End: Original strand, 20855 - 20953
Alignment:
Q  464 taaattcttctgaatttcttatataaatccctataaattggataatttctttagattttttgattatttgcttgcaatttcttatgtaaattctgataaa 563  Q
    ||||||| ||||||||||||||||||| | |||||||||||| ||||| |||||||||        |||||||||||||||||||||||||||  |||||    
T  20855 taaattcctctgaatttcttatataaagctctataaattggacaatttttttagattt--------tttgcttgcaatttcttatgtaaattcgtataaa 20946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 529 - 600
Target Start/End: Complemental strand, 85550 - 85479
Alignment:
Q  529 atttgcttgcaatttcttatgtaaa-ttctgataaatatgttggaatttatttttcctagactttataataat 600  Q
    |||||||||||||||||||||||||  ||| |||||||||||| || || |||  ||||||||||||||||||    
T  85550 atttgcttgcaatttcttatgtaaacctct-ataaatatgttgcaaattttttaacctagactttataataat 85479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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