View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4407-Insertion-4 (Length: 538)
Name: NF4407-Insertion-4
Description: NF4407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4407-Insertion-4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 527; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 12 - 538
Target Start/End: Complemental strand, 33357472 - 33356946
Alignment:
| Q |
12 |
gttcttagttttcttcattatttgaggttattaataatgtagaatgatgataatggacctcatttctatggacagtgtcctgttgaattagattcggtgc |
111 |
Q |
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| T |
33357472 |
gttcttagttttcttcattatttgaggttattaataatgtagaatgatgataatggacctcatttctatggacagtgtcctgttgaattagattcggtgc |
33357373 |
T |
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| Q |
112 |
taaaatggctaaaattccaatctttttggtaggattttggctattaagtaattgggctggtttattggagacagaagacatgatgaagtataagaaccct |
211 |
Q |
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| T |
33357372 |
taaaatggctaaaattccaatctttttggtaggattttggctattaagtaattgggctggtttattggagacagaagacatgatgaagtataagaaccct |
33357273 |
T |
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| Q |
212 |
aatgagtcaattgatataagggttgaggatcttattagtagaatgactcttgaggagaaaattggtcaaatgttacagattgagcgcaaatatgcatctg |
311 |
Q |
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| T |
33357272 |
aatgagtcaattgatataagggttgaggatcttattagtagaatgactcttgaggagaaaattggtcaaatgttacagattgagcgcaaatatgcatctg |
33357173 |
T |
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| Q |
312 |
ataatgtgctcaacaagtattttataggtaaagataatgatttcttttcacaattttgtttccactttatgtttggtattatcattcaattagattctaa |
411 |
Q |
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| T |
33357172 |
ataatgtgctcaacaagtattttataggtaaagataatgatttcttttcacaattttgtttccactttatgtttggtattatcattcaattagattctaa |
33357073 |
T |
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| Q |
412 |
tgaagaatacttgttttttgattattgattagggagtgttatgagtgagggaggaagtactccagttccacaggcttctgctgaaaactggattgatatg |
511 |
Q |
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| T |
33357072 |
tgaagaatacttgttttttgattattgattagggagtgttatgagtgagggaggaagtactccagttccacaggcttctgctgaaaactggattgatatg |
33356973 |
T |
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| Q |
512 |
ttgaatgagtttcagaaggatgcttta |
538 |
Q |
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| T |
33356972 |
ttgaatgagtttcagaaggatgcttta |
33356946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 113 - 538
Target Start/End: Complemental strand, 33349207 - 33348796
Alignment:
| Q |
113 |
aaaatggctaaaattccaatctttttggtaggattttggctattaagtaattgggctggtttattggagacagaagacatgatgaagtataagaacccta |
212 |
Q |
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| T |
33349207 |
aaaatggaaaaaattccaatctttttggtagggttttggctattaagtaattgggctggtttattggaggcagaagacttgatgaagtataagaacccta |
33349108 |
T |
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| Q |
213 |
atgagtcaattgatataagggttgaggatcttattagtagaatgactcttgaggagaaaattggtcaaatgttacagattgagcgcaaatatgcatctga |
312 |
Q |
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| T |
33349107 |
atgagtcaattgatgtaagggttgaggatcttattagtagaatgactcttgaggagaaaattggtcaaatgttacagattgagcgtaaatatgcatctga |
33349008 |
T |
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| Q |
313 |
taatgtgctcaacaagtattttataggtaaagataatgatttcttttcacaattttgtttccactttatgtttggtattatcattcaattagattctaat |
412 |
Q |
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| T |
33349007 |
taatgtgctcatcaagtattttat--------------atttctttttacaattttgtttccactttatgttaggtattatcattcaattagattctaat |
33348922 |
T |
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| Q |
413 |
gaagaatacttgttttttgattattgattagggagtgttatgagtgagggaggaagtactccagttccacaggcttctgctgaaaactggattgatatgt |
512 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||| |
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| T |
33348921 |
gaaaaatacttgttttttgattattgattagggagtgttatgagtgagggaggaagtactccagttctacaggcttctgctataaattggattgatatgg |
33348822 |
T |
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| Q |
513 |
tgaatgagtttcagaaggatgcttta |
538 |
Q |
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| T |
33348821 |
tgaatgaatttcagaaagatgtttta |
33348796 |
T |
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