View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4407-Insertion-6 (Length: 382)

Name: NF4407-Insertion-6
Description: NF4407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4407-Insertion-6
NF4407-Insertion-6
[»] chr7 (12 HSPs)
chr7 (8-360)||(43499847-43500206)
chr7 (91-230)||(17272700-17272832)
chr7 (134-180)||(7211968-7212014)
chr7 (197-230)||(7211861-7211894)
chr7 (169-230)||(11016954-11017015)
chr7 (68-180)||(25099252-25099365)
chr7 (134-230)||(24532764-24532859)
chr7 (187-225)||(29681895-29681933)
chr7 (197-235)||(32315703-32315741)
chr7 (172-230)||(42628383-42628441)
chr7 (192-225)||(17272826-17272859)
chr7 (91-120)||(29681868-29681897)
[»] chr3 (13 HSPs)
chr3 (70-226)||(20286900-20287058)
chr3 (91-230)||(22893925-22894056)
chr3 (66-180)||(31342049-31342165)
chr3 (91-230)||(11512388-11512520)
chr3 (103-230)||(48342209-48342337)
chr3 (67-230)||(32385358-32385523)
chr3 (169-229)||(29081592-29081652)
chr3 (187-230)||(49159501-49159544)
chr3 (169-230)||(45103101-45103162)
chr3 (75-120)||(22894003-22894049)
chr3 (192-225)||(22893898-22893931)
chr3 (197-230)||(29081723-29081756)
chr3 (66-179)||(48342786-48342902)
[»] chr4 (18 HSPs)
chr4 (94-230)||(31846819-31846957)
chr4 (94-228)||(31012121-31012257)
chr4 (81-195)||(6607410-6607526)
chr4 (134-230)||(53937892-53937988)
chr4 (185-226)||(32008357-32008398)
chr4 (171-230)||(54613025-54613084)
chr4 (169-230)||(46321440-46321501)
chr4 (99-230)||(2254528-2254657)
chr4 (91-120)||(6608453-6608482)
chr4 (76-120)||(30023649-30023694)
chr4 (192-225)||(31012254-31012287)
chr4 (169-226)||(37055633-37055690)
chr4 (169-230)||(42375095-42375156)
chr4 (169-230)||(47661927-47661988)
chr4 (187-228)||(53261213-53261253)
chr4 (81-121)||(54223567-54223608)
chr4 (134-230)||(36272949-36273045)
chr4 (188-224)||(39336414-39336450)
[»] chr2 (15 HSPs)
chr2 (91-230)||(39819055-39819196)
chr2 (66-230)||(7755337-7755494)
chr2 (91-220)||(12918535-12918666)
chr2 (135-226)||(5913521-5913611)
chr2 (169-230)||(6722036-6722097)
chr2 (195-229)||(5095752-5095786)
chr2 (192-225)||(12918660-12918693)
chr2 (75-119)||(13421794-13421839)
chr2 (169-230)||(16514509-16514570)
chr2 (192-225)||(39819190-39819223)
chr2 (187-223)||(12918508-12918544)
chr2 (65-101)||(12918665-12918701)
chr2 (197-225)||(13421813-13421841)
chr2 (64-100)||(23688416-23688452)
chr2 (65-101)||(39819195-39819231)
[»] chr1 (21 HSPs)
chr1 (65-230)||(9379810-9379986)
chr1 (66-230)||(10449447-10449613)
chr1 (100-230)||(6539593-6539725)
chr1 (94-230)||(9884833-9884971)
chr1 (66-180)||(15928073-15928190)
chr1 (62-230)||(44801747-44801918)
chr1 (65-230)||(44938793-44938960)
chr1 (91-230)||(28739338-28739470)
chr1 (91-180)||(50754766-50754857)
chr1 (91-171)||(35251201-35251287)
chr1 (91-230)||(28045320-28045452)
chr1 (169-230)||(48993909-48993970)
chr1 (169-229)||(29371453-29371513)
chr1 (173-223)||(44381917-44381967)
chr1 (197-230)||(718983-719016)
chr1 (192-225)||(28045446-28045479)
chr1 (192-225)||(50754851-50754884)
chr1 (197-225)||(10449454-10449482)
chr1 (169-205)||(17127581-17127617)
chr1 (169-225)||(37155043-37155099)
chr1 (169-225)||(49200063-49200119)
[»] chr5 (13 HSPs)
chr5 (94-230)||(29385313-29385451)
chr5 (91-230)||(19417437-19417577)
chr5 (137-230)||(1839963-1840056)
chr5 (94-177)||(36568750-36568834)
chr5 (91-161)||(5215594-5215666)
chr5 (95-195)||(9177874-9177976)
chr5 (142-230)||(7137633-7137721)
chr5 (145-230)||(4376424-4376509)
chr5 (169-230)||(16971229-16971290)
chr5 (141-180)||(23219359-23219398)
chr5 (169-236)||(30117814-30117881)
chr5 (169-230)||(2953275-2953336)
chr5 (169-230)||(3899924-3899985)
[»] chr6 (7 HSPs)
chr6 (64-195)||(16193757-16193890)
chr6 (91-226)||(2543769-2543896)
chr6 (91-158)||(11448121-11448190)
chr6 (66-120)||(369523-369578)
chr6 (197-230)||(369439-369472)
chr6 (192-225)||(2543742-2543775)
chr6 (197-225)||(16193853-16193881)
[»] chr8 (5 HSPs)
chr8 (134-230)||(31470737-31470832)
chr8 (169-235)||(5033246-5033312)
chr8 (70-161)||(33763461-33763555)
chr8 (169-230)||(33841583-33841644)
chr8 (169-230)||(35440961-35441022)
[»] scaffold0343 (1 HSPs)
scaffold0343 (138-230)||(12281-12370)
[»] scaffold0161 (1 HSPs)
scaffold0161 (171-225)||(27217-27271)
[»] scaffold1315 (1 HSPs)
scaffold1315 (197-226)||(1818-1847)
[»] scaffold1293 (1 HSPs)
scaffold1293 (197-226)||(224-253)
[»] scaffold0016 (1 HSPs)
scaffold0016 (169-230)||(49695-49756)


Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 360
Target Start/End: Complemental strand, 43500206 - 43499847
Alignment:
Q  8 gagtctatagtggatagagtgaagttgctttagtggaagtggtttcttggtcaaagtcggataatatttgggcgacattgtggttggtga---------c 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||         |    
T  43500206 gagtctatagtggatagagtgaagttgctttagtggaagtggtttcttggtcaaagtcggataatatttgggcgatattgtggttggtgatattggtgac 43500107  T
Q  99 attaccaaccacaatgttacaaagtacaaaacgacaaaaaatattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtcaatatcactaa 198  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  43500106 attaccaaccacaatgttacaaagtacaaaacaacaaaaaa-attgtgaaagaaaaagaagaatgtcatatgtgacattgtgattgaccaatatcactaa 43500008  T
Q  199 tgtcaccaaccacaatgtcacccaagtgctacacgtcaaaatcctagcagcccttgctcatattatgagtgggagataccgcctatcatgtgcttgaacc 298  Q
    |||||||||||||||||| |||||| || ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  43500007 tgtcaccaaccacaatgttacccaaatgttacacgtcaaaatcctagcagct-ttgctcatattatgagtgggagataccgcctatcatgtgcttgaacc 43499909  T
Q  299 gatatggttttgtgggtcatgatgggcttgtgtggtttgccttccgtttgtgtcatcagggt 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43499908 gatatggttttgtgggtcatgatgggcttgtgtggtttgccttccgtttgtgtcatcagggt 43499847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 17272832 - 17272700
Alignment:
Q  91 ttggtgacattaccaaccacaatgttacaaa-gtacaaaacgacaaaaaa-tattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtca 188  Q
    ||||||||||||||||||||||||||||||  || |||||| |||||||| | |||||||||||||||||||| | || ||||||||||||| || |       
T  17272832 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttgg--- 17272736  T
Q  189 atatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
          | ||||||||||||||||||||||||||||||||||    
T  17272735 ------ccaatgtcaccaaccacaatgtcacccaagtgctac 17272700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 7211968 - 7212014
Alignment:
Q  134 aaaaaatattgtgaaagaaaaagaagaatgtcatatgtgacattgtg 180  Q
    ||||||| |||||||||||||||||||| |||| |||||||||||||    
T  7211968 aaaaaatcttgtgaaagaaaaagaagaaagtcacatgtgacattgtg 7212014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 7211894 - 7211861
Alignment:
Q  197 aatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    ||||||||||||||||||||||||||||||||||    
T  7211894 aatgtcaccaaccacaatgtcacccaagtgctac 7211861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 11016954 - 11017015
Alignment:
Q  169 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    ||||||||||||||| |||||| |||| ||||||||| | | | ||||||||||||||||||    
T  11016954 tgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctac 11017015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 180
Target Start/End: Original strand, 25099252 - 25099365
Alignment:
Q  68 ataatatttgggcgacattgtggttggtgacattaccaaccacaatgttacaaa-gtacaaaacgacaaaaaatattgtgaaagaaaaagaagaatgtca 166  Q
    |||||||||||| || |||||| ||||||  ||||||||| ||| ||| ||||  |||||||   | | |||||||||||||||||||||||||| | ||    
T  25099252 ataatatttgggtgatattgtgcttggtggtattaccaactacattgtcacaagtgtacaaagaaatacaaaatattgtgaaagaaaaagaagaaagaca 25099351  T
Q  167 tatgtgacattgtg 180  Q
      ||||||||||||    
T  25099352 cttgtgacattgtg 25099365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 24532764 - 24532859
Alignment:
Q  134 aaaaaatattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    |||||||||  | ||||| ||||||||| | ||  |||||||||||| ||  ||||| |||| | |||||||||||||||||| |||||||||||||    
T  24532764 aaaaaatatcataaaagagaaagaagaaggacacttgtgacattgtggttgatcaatgtcac-agtgtcaccaaccacaatgttacccaagtgctac 24532859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 29681895 - 29681933
Alignment:
Q  187 caatatcactaatgtcaccaaccacaatgtcacccaagt 225  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  29681895 caatgtcaccaatgtcaccaaccacaatgtcacccaagt 29681933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 32315741 - 32315703
Alignment:
Q  197 aatgtcaccaaccacaatgtcacccaagtgctacacgtc 235  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  32315741 aatgtcaccaaccacaatgtcacgcaagtgctatacgtc 32315703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 42628383 - 42628441
Alignment:
Q  172 gacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    |||||||||||| | ||||||||| ||||||||| | | | ||||||||||||||||||    
T  42628383 gacattgtgattggccaatatcaccaatgtcacccaactctatgtcacccaagtgctac 42628441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 17272826 - 17272859
Alignment:
Q  192 tcactaatgtcaccaaccacaatgtcacccaagt 225  Q
    |||| |||||||||||||||||||||||||||||    
T  17272826 tcaccaatgtcaccaaccacaatgtcacccaagt 17272859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 120
Target Start/End: Complemental strand, 29681897 - 29681868
Alignment:
Q  91 ttggtgacattaccaaccacaatgttacaa 120  Q
    ||||||||||||||||||||||||||||||    
T  29681897 ttggtgacattaccaaccacaatgttacaa 29681868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 70 - 226
Target Start/End: Complemental strand, 20287058 - 20286900
Alignment:
Q  70 aatatttgggcgacattgtggttggtgacattaccaaccacaatgttacaa-agtacaaaacgacaaaaaa-tattgtgaaagaaaaagaagaatgtcat 167  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||  || |||||| |||||||| | |||| ||||||||||||||| | ||     
T  20287058 aatatttgggtgacattgtggttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaaagtcttgtaaaagaaaaagaagaaagccac 20286959  T
Q  168 atgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtg 226  Q
    ||||||||||||| || | |||| |||  |||||||||||||| |||||||||||||||    
T  20286958 atgtgacattgtggttggccaatgtcatcaatgtcaccaaccataatgtcacccaagtg 20286900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 91 - 230
Target Start/End: Original strand, 22893925 - 22894056
Alignment:
Q  91 ttggtgacattaccaaccacaatgttacaaa-gtacaaaacgacaaaaaatattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtcaa 189  Q
    ||||||||||||||||||||||||||||||  ||||||||| ||||||||| |||| ||||||||||||||| ||||  |||||||||||| || |||      
T  22893925 ttggtgacattaccaaccacaatgttacaagtgtacaaaacaacaaaaaatcttgttaaagaaaaagaagaaagtcacttgtgacattgtggttggtc-- 22894022  T
Q  190 tatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
           ||||||||||||||||||||||||||||||||||    
T  22894023 -------aatgtcaccaaccacaatgtcacccaagtgctac 22894056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 66 - 180
Target Start/End: Complemental strand, 31342165 - 31342049
Alignment:
Q  66 ggataatatttgggcgacattgtggttggtgacattaccaaccacaatgttacaa-agtacaaaacgac-aaaaaatattgtgaaagaaaaagaagaatg 163  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||  || |||||| || ||||||| |||||||||||||||||||| |    
T  31342165 ggataatatttgggtgacattgtggttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaaagaagaaag 31342066  T
Q  164 tcatatgtgacattgtg 180  Q
      | |||||||||||||    
T  31342065 ctacatgtgacattgtg 31342049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 11512520 - 11512388
Alignment:
Q  91 ttggtgacattaccaaccacaatgttacaa-agtacaaaacgac-aaaaaatattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtca 188  Q
    ||||||||||||||||||||||||||||||  || ||||||  | ||||||| |||||||||||||||||||| | || ||||||||||||| || |       
T  11512520 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacatcaaaaaaatcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttgg--- 11512424  T
Q  189 atatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
          | ||||||||||||||||||||||||||||||||||    
T  11512423 ------ccaatgtcaccaaccacaatgtcacccaagtgctac 11512388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 103 - 230
Target Start/End: Complemental strand, 48342337 - 48342209
Alignment:
Q  103 ccaaccacaatgttacaaa-gtacaaaacgacaaaaaa-tattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtcaatatcactaatg 200  Q
    ||||||||||||| ||||| ||||||||  |||||||| |||||| ||||| || |||||| | || ||||| ||||||| || |  ||| |||| ||||    
T  48342337 ccaaccacaatgtcacaaatgtacaaaaaaacaaaaaaatattgtaaaagagaatgaagaaagacacatgtggcattgtggttggctaatgtcac-aatg 48342239  T
Q  201 tcaccaaccacaatgtcacccaagtgctac 230  Q
    ||||||||||||||||||||||||||||||    
T  48342238 tcaccaaccacaatgtcacccaagtgctac 48342209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 230
Target Start/End: Original strand, 32385358 - 32385523
Alignment:
Q  67 gataatatttgggcgacattgtggttggtgacatt-accaaccacaatgttacaa-agtacaaaacgacaaa-aaatattgtgaaagaaaaagaagaatg 163  Q
    ||||||||||||| ||||||||| |||||||||||   |||||||||||| ||||  |||||||   ||||| ||||||||||||||| |||||||||      
T  32385358 gataatatttgggtgacattgtgattggtgacattggtcaaccacaatgtgacaagtgtacaaataaacaaataaatattgtgaaagagaaagaagaaaa 32385457  T
Q  164 tcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
     ||  | | |||||||| || | ||||||||| ||| ||| |||||||||| ||||| |||||||||    
T  32385458 acacttttaacattgtggttggccaatatcac-aatatcatcaaccacaatatcacctaagtgctac 32385523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 29081652 - 29081592
Alignment:
Q  169 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgcta 229  Q
    |||||||||||| || |||||| ||||  |||||||||||||||||||||||||| |||||    
T  29081652 tgtgacattgtggttggtcaatgtcaccgatgtcaccaaccacaatgtcacccaaatgcta 29081592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 49159501 - 49159544
Alignment:
Q  187 caatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    |||| |||| ||||||||||||||||||||||||||||||||||    
T  49159501 caatgtcaccaatgtcaccaaccacaatgtcacccaagtgctac 49159544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 45103162 - 45103101
Alignment:
Q  169 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    |||||||||||||||  |||||||||| ||||||||| | | | ||||||||||||||||||    
T  45103162 tgtgacattgtgattgatcaatatcaccaatgtcacccaactctatgtcacccaagtgctac 45103101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 22894049 - 22894003
Alignment:
Q  75 ttgggcgacattgtggttggtgacatt-accaaccacaatgttacaa 120  Q
    ||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  22894049 ttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaa 22894003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 22893931 - 22893898
Alignment:
Q  192 tcactaatgtcaccaaccacaatgtcacccaagt 225  Q
    |||| |||||||||||||||||||||||||||||    
T  22893931 tcaccaatgtcaccaaccacaatgtcacccaagt 22893898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 29081723 - 29081756
Alignment:
Q  197 aatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    |||||||||||||||||| |||||||||||||||    
T  29081723 aatgtcaccaaccacaatatcacccaagtgctac 29081756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 179
Target Start/End: Original strand, 48342786 - 48342902
Alignment:
Q  66 ggataatatttgggcgacattgtggttggtgacattac-caaccacaatgttacaaa-gtacaaaacgacaaaa-aatattgtgaaagaaaaagaagaat 162  Q
    |||||||| ||||| |||||| ||||||| ||||||   |||||||||||| ||||| |||||||   |||||| |||||||| ||||| || ||||||     
T  48342786 ggataatacttgggtgacattatggttggcgacattggtcaaccacaatgtcacaaatgtacaaagaaacaaaaaaatattgtaaaagagaatgaagaaa 48342885  T
Q  163 gtcatatgtgacattgt 179  Q
    | || ||||||||||||    
T  48342886 gacacatgtgacattgt 48342902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 94 - 230
Target Start/End: Original strand, 31846819 - 31846957
Alignment:
Q  94 gtgacattaccaaccacaatgttacaaa-gtacaaaacgacaaaaaa-tattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtcaata 191  Q
    |||||||||||||||| ||||||||||  || |||||| |||||||| | |||||||||||||||||||| | || ||||||||||||| || | |||||    
T  31846819 gtgacattaccaaccaaaatgttacaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaata 31846918  T
Q  192 tcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  31846919 tcaccaatgtcaccaaccacaatgtcacccaagtgctac 31846957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 94 - 228
Target Start/End: Complemental strand, 31012257 - 31012121
Alignment:
Q  94 gtgacattaccaaccacaatgttacaaagta--caaaacgacaaaaaata-ttgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtcaat 190  Q
    |||||||||||||||||||| |||||| |||  |||||| |||||||| | ||||||||||||||||| || |||| ||||||||||||| || ||||||    
T  31012257 gtgacattaccaaccacaatattacaa-gtatgcaaaacaacaaaaaaaaattgtgaaagaaaaagaaaaaagtcacatgtgacattgtggttggtcaat 31012159  T
Q  191 atcactaatgtcaccaaccacaatgtcacccaagtgct 228  Q
     |||| | | ||||||||||||||||||| ||||||||    
T  31012158 gtcaccattatcaccaaccacaatgtcacacaagtgct 31012121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 195
Target Start/End: Original strand, 6607410 - 6607526
Alignment:
Q  81 gacattgtggttggtgacattaccaaccacaatgttacaa-agtacaaaacgac-aaaaaatattgtgaaagaaaaagaagaatgtcatatgtgacattg 178  Q
    ||||||||||||||||||||||||||||||||||||||||  || |||||| || ||||||| |||||||||||||||||||| | || ||||||||||     
T  6607410 gacattgtggttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaaagaagaaagccacatgtgacatta 6607509  T
Q  179 tgattagtcaatatcac 195  Q
    || || |||||| ||||    
T  6607510 tggttggtcaatgtcac 6607526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 53937988 - 53937892
Alignment:
Q  134 aaaaaatattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    |||||||||||| ||||| | | ||||| || |  |||||||||||| || |||||||||||||||||||| ||||||||||| || ||||||||||    
T  53937988 aaaaaatattgtaaaagagacataagaaagttacttgtgacattgtggttggtcaatatcactaatgtcactaaccacaatgttactcaagtgctac 53937892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 32008357 - 32008398
Alignment:
Q  185 gtcaatatcactaatgtcaccaaccacaatgtcacccaagtg 226  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  32008357 gtcaatatcactaatgtcaccaaccacaatgtcacccaagtg 32008398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 54613084 - 54613025
Alignment:
Q  171 tgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    |||||||||| || ||||||  ||||||||||||||||||||||||||||||||| ||||    
T  54613084 tgacattgtggttggtcaatgccactaatgtcaccaaccacaatgtcacccaagttctac 54613025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 46321440 - 46321501
Alignment:
Q  169 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    |||||||||||| || |||||| |||| ||| ||||||||||||||||||| ||||||||||    
T  46321440 tgtgacattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcactcaagtgctac 46321501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 230
Target Start/End: Complemental strand, 2254657 - 2254528
Alignment:
Q  99 attaccaaccacaatgttacaaa-gtacaaaacgacaaaaaatattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtcaatatcacta 197  Q
    |||||||| |||||||||||||  ||||||||| ||||||||   |   || |||||| || || |||| ||||||||||||| || |||||| |||  |    
T  2254657 attaccaatcacaatgttacaagtgtacaaaacaacaaaaaagtct---aatgaaaaaaaaaaaagtcacatgtgacattgtggttggtcaatgtcatca 2254561  T
Q  198 atgtcaccaaccacaatgtcacccaagtgctac 230  Q
    || |||||||||| ||||| |||||| ||||||    
T  2254560 atatcaccaaccataatgtgacccaaatgctac 2254528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 120
Target Start/End: Complemental strand, 6608482 - 6608453
Alignment:
Q  91 ttggtgacattaccaaccacaatgttacaa 120  Q
    ||||||||||||||||||||||||||||||    
T  6608482 ttggtgacattaccaaccacaatgttacaa 6608453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 30023694 - 30023649
Alignment:
Q  76 tgggcgacattgtggttggtgacatt-accaaccacaatgttacaa 120  Q
    |||| ||||||||||||||||||||| |||||||||||||| ||||    
T  30023694 tgggtgacattgtggttggtgacattgaccaaccacaatgtcacaa 30023649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 31012254 - 31012287
Alignment:
Q  192 tcactaatgtcaccaaccacaatgtcacccaagt 225  Q
    ||||||||||||||||||||||||||||| ||||    
T  31012254 tcactaatgtcaccaaccacaatgtcacctaagt 31012287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 37055690 - 37055633
Alignment:
Q  169 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtg 226  Q
    ||||| |||||| || ||||||||||||||||||||||| |||  ||||| |||||||    
T  37055690 tgtgagattgtggttggtcaatatcactaatgtcaccaatcacgctgtcatccaagtg 37055633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 42375095 - 42375156
Alignment:
Q  169 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    |||||||||||||||  ||||| |||| ||||||||| | | | ||||||||||||||||||    
T  42375095 tgtgacattgtgattgatcaatgtcaccaatgtcacccaactctatgtcacccaagtgctac 42375156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 47661927 - 47661988
Alignment:
Q  169 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    ||||||||||||||| |||||| |||| ||||||||| | | | ||||||||||| ||||||    
T  47661927 tgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaaatgctac 47661988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 53261213 - 53261253
Alignment:
Q  187 caatatcactaatgtcaccaaccacaatgtcacccaagtgct 228  Q
    ||||||||| |||||||||||||||||| |||||||||||||    
T  53261213 caatatcac-aatgtcaccaaccacaatttcacccaagtgct 53261253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 54223567 - 54223608
Alignment:
Q  81 gacattgtggttggtgacatt-accaaccacaatgttacaaa 121  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  54223567 gacattgtggttggtgacattgaccaaccacaatgtcacaaa 54223608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 36273045 - 36272949
Alignment:
Q  134 aaaaaatattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    ||||||| |||||||||| ||| ||||| ||||  | | | |||||  ||||| |||||||||||| |||||||| ||||| |||  ||||||||||    
T  36273045 aaaaaatcttgtgaaagagaaataagaaagtcacttataatattgtagttagttaatatcactaatatcaccaactacaatatcattcaagtgctac 36272949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 39336414 - 39336450
Alignment:
Q  188 aatatcactaatgtcaccaaccacaatgtcacccaag 224  Q
    |||||||| |||||||||||||||||||||| |||||    
T  39336414 aatatcacaaatgtcaccaaccacaatgtcatccaag 39336450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 39819196 - 39819055
Alignment:
Q  91 ttggtgacattaccaaccacaatgttacaaa-gtacaaaacgacaaaaaa-tattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtca 188  Q
    ||||||||||||||||||||||| ||||||  || |||||| |||||||| | |||||||||||||||||||| | || ||||||||||||| || | ||    
T  39819196 ttggtgacattaccaaccacaatattacaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggcca 39819097  T
Q  189 atatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    || |||| ||||||||||||||||||||||||||||||||||    
T  39819096 atgtcaccaatgtcaccaaccacaatgtcacccaagtgctac 39819055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 66 - 230
Target Start/End: Complemental strand, 7755494 - 7755337
Alignment:
Q  66 ggataatatttgggcgacattgtggttggtgacattaccaaccacaatgttacaa-agtacaaaacgac-aaaaaatattgtgaaagaaaaagaagaatg 163  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||  ||||||||| || ||||||| |||| |||||||||||| || |    
T  7755494 ggataatatttgggtgacattgtggttggtgacattaccaatcacaatgttacaagtgtacaaaacaacaaaaaaatcttgttaaagaaaaagaaaaaag 7755395  T
Q  164 tcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
     ||  |||||||||||| || |         | ||||||||||||||||||||||||||||||||||    
T  7755394 ccacttgtgacattgtggttgg---------ccaatgtcaccaaccacaatgtcacccaagtgctac 7755337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 12918666 - 12918535
Alignment:
Q  91 ttggtgacattaccaaccacaatgttacaaa-gtacaaaacgacaaaaaa-tattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtca 188  Q
    ||||||||||||||||||||||||||||||| || |||||| |||||||| | || |||||||||||||| || | || ||||||||||||| || | ||    
T  12918666 ttggtgacattaccaaccacaatgttacaaatgtgcaaaacaacaaaaaagtcttatgaaagaaaaagaaaaaagccacatgtgacattgtggttggcca 12918567  T
Q  189 atatcactaatgtcaccaaccacaatgtcacc 220  Q
    || |||| ||||||| ||||||||||||||||    
T  12918566 atgtcaccaatgtcatcaaccacaatgtcacc 12918535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 5913611 - 5913521
Alignment:
Q  135 aaaaatattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtg 226  Q
    ||||| || |||||||| ||||||||| | ||| ||| | |||||| || | |||| |||| ||||||||||||||||||||||||||||||    
T  5913611 aaaaaaatagtgaaagagaaagaagaaagacatttgtaagattgtggttggccaatgtcac-aatgtcaccaaccacaatgtcacccaagtg 5913521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 6722036 - 6722097
Alignment:
Q  169 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    ||||||||||||||| | ||||||||||||||||| | | | | ||||||||||||||||||    
T  6722036 tgtgacattgtgattggccaatatcactaatgtcaaccaactctatgtcacccaagtgctac 6722097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 229
Target Start/End: Complemental strand, 5095786 - 5095752
Alignment:
Q  195 ctaatgtcaccaaccacaatgtcacccaagtgcta 229  Q
    |||||||||||||||||||| ||||||||||||||    
T  5095786 ctaatgtcaccaaccacaatatcacccaagtgcta 5095752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 12918660 - 12918693
Alignment:
Q  192 tcactaatgtcaccaaccacaatgtcacccaagt 225  Q
    |||| |||||||||||||||||||||||||||||    
T  12918660 tcaccaatgtcaccaaccacaatgtcacccaagt 12918693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 13421839 - 13421794
Alignment:
Q  75 ttgggcgacattgtggttggtgacatt-accaaccacaatgttaca 119  Q
    ||||| ||||||||||||||||||||| ||||||||||| ||||||    
T  13421839 ttgggtgacattgtggttggtgacattgaccaaccacaacgttaca 13421794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 16514509 - 16514570
Alignment:
Q  169 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    ||||||||||||||| |||||| |||| ||| ||||| | | | ||||||||||||||||||    
T  16514509 tgtgacattgtgattggtcaatgtcaccaatctcacccaactctatgtcacccaagtgctac 16514570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 39819190 - 39819223
Alignment:
Q  192 tcactaatgtcaccaaccacaatgtcacccaagt 225  Q
    |||| |||||||||||||||||||||||||||||    
T  39819190 tcaccaatgtcaccaaccacaatgtcacccaagt 39819223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 12918544 - 12918508
Alignment:
Q  187 caatatcactaatgtcaccaaccacaatgtcacccaa 223  Q
    |||| |||| |||||||||||||||||||||||||||    
T  12918544 caatgtcaccaatgtcaccaaccacaatgtcacccaa 12918508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 12918701 - 12918665
Alignment:
Q  65 cggataatatttgggcgacattgtggttggtgacatt 101  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  12918701 cggataatacttgggtgacattgtggttggtgacatt 12918665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 13421813 - 13421841
Alignment:
Q  197 aatgtcaccaaccacaatgtcacccaagt 225  Q
    |||||||||||||||||||||||||||||    
T  13421813 aatgtcaccaaccacaatgtcacccaagt 13421841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 23688416 - 23688452
Alignment:
Q  64 tcggataatatttgggcgacattgtggttggtgacat 100  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  23688416 tcggaaaatatttgggtgacattgtggttggtgacat 23688452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 39819231 - 39819195
Alignment:
Q  65 cggataatatttgggcgacattgtggttggtgacatt 101  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  39819231 cggataatacttgggtgacattgtggttggtgacatt 39819195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 65 - 230
Target Start/End: Complemental strand, 9379986 - 9379810
Alignment:
Q  65 cggataatatttgggcgacattgtggttggtgacatt---------accaaccacaatgttacaaa-gtacaaaacgacaaaaaa-tattgtgaaagaaa 153  Q
    ||||||||||||||| |||||||||||||||||||||         |||||||||||||||||||  || |||||| |||||||| | ||||||||||||    
T  9379986 cggataatatttgggtgacattgtggttggtgacattggtaacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaa 9379887  T
Q  154 aagaagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    |||||||| | || ||||||||||||| || | ||||||||| ||||||||||||||| || |||||||||||||||    
T  9379886 aagaagaaagccacatgtgacattgtggttggccaatatcaccaatgtcaccaaccacgatatcacccaagtgctac 9379810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 66 - 230
Target Start/End: Original strand, 10449447 - 10449613
Alignment:
Q  66 ggataatatttgggcgacattgtggttggtgacatt-accaaccacaatgttacaa-agtacaaaacgac-aaaaaatattgtgaaagaaaaagaagaat 162  Q
    |||||||| ||||| ||||||||||||||||||||| |||||||||||||| ||||  |||||||   || |||||||||||||||||| |||||||||     
T  10449447 ggataatacttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgtacaaagaaacaaaaaaatattgtgaaagagaaagaagaaa 10449546  T
Q  163 gtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    |  || |||||||||||| ||   |||| |||| |||||||||||||||||||||| |||||||||||    
T  10449547 gatatttgtgacattgtggttgaccaatgtcac-aatgtcaccaaccacaatgtcatccaagtgctac 10449613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 100 - 230
Target Start/End: Original strand, 6539593 - 6539725
Alignment:
Q  100 ttaccaaccacaatgttacaaa-gtacaaaacgacaaaaaa-tattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtcaatatcacta 197  Q
    |||||||||||||||||||||  || |||||| |||||||| | |||||||||||||||||||| |||| ||||||||||||| ||   |||| |||| |    
T  6539593 ttaccaaccacaatgttacaagtgtgcaaaacaacaaaaaagtcttgtgaaagaaaaagaagaaagtcacatgtgacattgtggttgaccaatgtcacca 6539692  T
Q  198 atgtcaccaaccacaatgtcacccaagtgctac 230  Q
    || ||| ||||||||||||||||||||||||||    
T  6539693 atatcatcaaccacaatgtcacccaagtgctac 6539725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 94 - 230
Target Start/End: Complemental strand, 9884971 - 9884833
Alignment:
Q  94 gtgacattaccaaccacaatgttacaaa-gtacaaaacgacaaaaaa-tattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtcaata 191  Q
    ||||||||| |||||||||||||||||  || |||||| |||||||| | |||||||||||||||||||| | || ||||||||||||| ||   ||||     
T  9884971 gtgacattatcaaccacaatgttacaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttgaccaatg 9884872  T
Q  192 tcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    |||| ||||||||||||||| |||||||| |||||||||    
T  9884871 tcaccaatgtcaccaaccactatgtcaccaaagtgctac 9884833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 15928073 - 15928190
Alignment:
Q  66 ggataatatttgggcgacattgtggttggtgacattaccaaccacaatgttacaa-agtacaaaacgaca--aaaaatattgtgaaagaaaaagaagaat 162  Q
    |||||||| ||||| ||||||||| |||||||||||| |||||||||||||||||  ||||||||| |||  |||||| ||||||||||||||||||||     
T  15928073 ggataatacttgggtgacattgtgattggtgacattatcaaccacaatgttacaagtgtacaaaacaacaacaaaaatcttgtgaaagaaaaagaagaaa 15928172  T
Q  163 gtcatatgtgacattgtg 180  Q
    | || |||||||||||||    
T  15928173 gccacatgtgacattgtg 15928190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 230
Target Start/End: Original strand, 44801747 - 44801918
Alignment:
Q  62 agtcggataatatttgggcgacattgtggttggtgacatta-ccaaccacaatgttacaaagt--acaaaacgacaaaa--aatattgtgaaagaaaaag 156  Q
    |||||||||||| || || || |||||||||| |||||||  ||||||||||||| |||||||  ||||||  ||||||  |||||||||||||| ||||    
T  44801747 agtcggataatacttaggtgatattgtggttgatgacattggccaaccacaatgtcacaaagtgtacaaaaaaacaaaaaaaatattgtgaaagagaaag 44801846  T
Q  157 aagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    ||||| | ||| ||||| ||| || || |||||  | || |||||||||||||||||||||| |||||||||||    
T  44801847 aagaaagacatttgtgatattatggttggtcaacgt-ac-aatgtcaccaaccacaatgtcatccaagtgctac 44801918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 230
Target Start/End: Original strand, 44938793 - 44938960
Alignment:
Q  65 cggataatatttgggcgacattgtggttggtgacatt-accaaccacaatgttacaaa-gtacaaaacgacaaaaaatattgtgaaagaaaaagaagaat 162  Q
    ||||||| | ||||| |||||||||||| |||||||| |||||||| ||||| ||||  ||||||||    ||||||  |||||||||| |||||||||     
T  44938793 cggataacacttgggtgacattgtggttagtgacattgaccaaccagaatgtcacaagtgtacaaaaaattaaaaaactttgtgaaagagaaagaagaaa 44938892  T
Q  163 gtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    | ||  |||  ||||||| ||  ||||| ||||||||||||| || ||||||||||||||||||||||    
T  44938893 gccacttgtaccattgtggttgttcaatgtcactaatgtcactaatcacaatgtcacccaagtgctac 44938960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 91 - 230
Target Start/End: Original strand, 28739338 - 28739470
Alignment:
Q  91 ttggtgacattaccaaccacaatgttacaa-agtacaaaacgac-aaaaaatattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtca 188  Q
    ||||||||||||||||||||||||||||||  || |||||  || ||||||| |||| |||||||||||| || | || ||||||||||||| || |       
T  28739338 ttggtgacattaccaaccacaatgttacaagtgtgcaaaataacaaaaaaatcttgtaaaagaaaaagaaaaaagccacatgtgacattgtggttgg--- 28739434  T
Q  189 atatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
          | ||||||||||||||||||||||||||||||||||    
T  28739435 ------ccaatgtcaccaaccacaatgtcacccaagtgctac 28739470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 50754857 - 50754766
Alignment:
Q  91 ttggtgacattaccaaccacaatgttacaaa-gtacaaaacgacaaaaaa-tattgtgaaagaaaaagaagaatgtcatatgtgacattgtg 180  Q
    |||||||||||| |||||||||||||||||  || |||||| |||||||| | |||| ||||||||||||||| | || |||||||||||||    
T  50754857 ttggtgacattatcaaccacaatgttacaagtgtgcaaaacaacaaaaaaatcttgtaaaagaaaaagaagaaagccacatgtgacattgtg 50754766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 35251201 - 35251287
Alignment:
Q  91 ttggtgacattaccaaccacaatgttacaa----agtacaaaacgacaaaaaata--ttgtgaaagaaaaagaagaatgtcatatgt 171  Q
    ||||||||||||||||||||||||||||||    | |||||||| |||||||| |  |||||||||||||||||||| |||| ||||    
T  35251201 ttggtgacattaccaaccacaatgttacaagtgtaatacaaaacaacaaaaaaaaacttgtgaaagaaaaagaagaaagtcaaatgt 35251287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 28045452 - 28045320
Alignment:
Q  91 ttggtgacattaccaaccacaatgttacaa-agtacaaaacgacaa--aaaatattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtc 187  Q
    ||||||||||||||||||||||||||||||  ||||||||| | ||  ||||| |||| ||||||||||||||| | ||  ||||||||| || || | |    
T  28045452 ttggtgacattaccaaccacaatgttacaagtgtacaaaacaaaaaagaaaatcttgttaaagaaaaagaagaaagccacttgtgacattatggttggcc 28045353  T
Q  188 aatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    |||          ||||||||||||||||||||||||||||||    
T  28045352 aat----------tcaccaaccacaatgtcacccaagtgctac 28045320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 48993970 - 48993909
Alignment:
Q  169 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    ||||||||||||||| |||||| |||| ||||||||| | | | ||||||||||||||||||    
T  48993970 tgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctac 48993909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 29371453 - 29371513
Alignment:
Q  169 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgcta 229  Q
    ||||||||||||||| ||||||||||| ||||||||| | | | ||||||| |||||||||    
T  29371453 tgtgacattgtgattggtcaatatcaccaatgtcacctagctctatgtcacacaagtgcta 29371513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 44381967 - 44381917
Alignment:
Q  173 acattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaa 223  Q
    |||||||| || |||||| |||| ||| |||||||||||||||||||||||    
T  44381967 acattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcacccaa 44381917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 719016 - 718983
Alignment:
Q  197 aatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    ||||||||||||||||||||||| ||||||||||    
T  719016 aatgtcaccaaccacaatgtcactcaagtgctac 718983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 28045446 - 28045479
Alignment:
Q  192 tcactaatgtcaccaaccacaatgtcacccaagt 225  Q
    |||| |||||||||||||||||||||||||||||    
T  28045446 tcaccaatgtcaccaaccacaatgtcacccaagt 28045479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 50754851 - 50754884
Alignment:
Q  192 tcactaatgtcaccaaccacaatgtcacccaagt 225  Q
    |||| |||||||||||||||||||||||||||||    
T  50754851 tcaccaatgtcaccaaccacaatgtcacccaagt 50754884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 10449482 - 10449454
Alignment:
Q  197 aatgtcaccaaccacaatgtcacccaagt 225  Q
    |||||||||||||||||||||||||||||    
T  10449482 aatgtcaccaaccacaatgtcacccaagt 10449454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 17127617 - 17127581
Alignment:
Q  169 tgtgacattgtgattagtcaatatcactaatgtcacc 205  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  17127617 tgtgacattgtgattggtcaatgtcactaatgtcacc 17127581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 37155099 - 37155043
Alignment:
Q  169 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagt 225  Q
    ||||||||||||||| | |||| |||| ||||||||||| | | |||||||||||||    
T  37155099 tgtgacattgtgattggccaatgtcaccaatgtcaccaaactctatgtcacccaagt 37155043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 49200063 - 49200119
Alignment:
Q  169 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagt 225  Q
    |||||||||||| || |||||| |||  ||| |||||||||||||||||||| ||||    
T  49200063 tgtgacattgtggttggtcaatgtcatcaatatcaccaaccacaatgtcacctaagt 49200119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 94 - 230
Target Start/End: Original strand, 29385313 - 29385451
Alignment:
Q  94 gtgacattaccaaccacaatgttacaaa-gtacaaaacgacaaaaaa-tattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtcaata 191  Q
    |||| ||||||||||||||||||||||  || |||||| |||||||| | | | |||||||||||||||| | || ||||||||||||| || | ||||     
T  29385313 gtgatattaccaaccacaatgttacaagtgtgcaaaacaacaaaaaaatctagcgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatg 29385412  T
Q  192 tcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  29385413 tcaccaatgtcaccaaccacaatgtcacccaagtgctac 29385451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 19417577 - 19417437
Alignment:
Q  91 ttggtgacattaccaaccacaatgttacaaagtacaaaacgacaaaaaa-tattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtcaa 189  Q
    ||||||||||||||||||||||||||  |  || |||||| |||||||| | |||||||||||||  ||||| |||| ||||||||||||  ||   |||    
T  19417577 ttggtgacattaccaaccacaatgttcaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaagaaagaaagtcacatgtgacattgtagttgaccaa 19417478  T
Q  190 tatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    | |||| ||||||||||||||||||||||||||||||||||    
T  19417477 tgtcaccaatgtcaccaaccacaatgtcacccaagtgctac 19417437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 137 - 230
Target Start/End: Complemental strand, 1840056 - 1839963
Alignment:
Q  137 aaatattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    |||| |||||||||||||||||||| | || ||||||||||||| || | |||| |||  ||||||||||||||||||||||||||| ||||||    
T  1840056 aaatcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcatcaatgtcaccaaccacaatgtcacccaattgctac 1839963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 36568834 - 36568750
Alignment:
Q  94 gtgacattaccaaccacaatgttacaaa-gtacaaaacgacaaaaaatattgtgaaagaaaaagaagaatgtcatatgtgacatt 177  Q
    ||||||| | |||||||||||||||||  ||||||||| ||||||||||||||||||||||| |||||| | || ||||||||||    
T  36568834 gtgacataatcaaccacaatgttacaagtgtacaaaacaacaaaaaatattgtgaaagaaaaggaagaaagccacatgtgacatt 36568750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 5215594 - 5215666
Alignment:
Q  91 ttggtgacattaccaaccacaatgttacaa-agtacaaaacgacaa-aaaatattgtgaaagaaaaagaagaa 161  Q
    ||||||||||||||||||||||||||||||  ||||||||| |||| ||||| |||||||||||||| |||||    
T  5215594 ttggtgacattaccaaccacaatgttacaagtgtacaaaacaacaacaaaatcttgtgaaagaaaaataagaa 5215666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 9177874 - 9177976
Alignment:
Q  95 tgacattaccaaccacaatgttacaa-agtacaaaacga-caaaaaatattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtcaatat 192  Q
    ||||| ||||||||||||||||| ||  || |||||| |  |||||||||||||||||||||||||||| |||| |||||| |||||| || | ||||||    
T  9177874 tgacactaccaaccacaatgttataagtgtgcaaaacaataaaaaaatattgtgaaagaaaaagaagaaagtcacatgtgatattgtggttggccaatat 9177973  T
Q  193 cac 195  Q
    |||    
T  9177974 cac 9177976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 7137721 - 7137633
Alignment:
Q  142 ttgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    |||||||||| || |||||| ||||  |||||||||||| || |||||| |||| ||| ||||||||  ||||||||||||||| ||||    
T  7137721 ttgtgaaagagaatgaagaaagtcacttgtgacattgtggttggtcaatgtcaccaatttcaccaactgcaatgtcacccaagtactac 7137633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 4376424 - 4376509
Alignment:
Q  145 tgaaagaaaaagaagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    ||||||| |||||||||   ||| |||||||||||  || |||| | |||| ||||||| ||||||||||||||| ||||||||||    
T  4376424 tgaaagagaaagaagaaaaccatttgtgacattgttgttggtcattgtcaccaatgtcatcaaccacaatgtcactcaagtgctac 4376509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 16971229 - 16971290
Alignment:
Q  169 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    ||||||||||||||| |||||| |||| ||||||||| | | | ||||||||||||||||||    
T  16971229 tgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctac 16971290  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 180
Target Start/End: Original strand, 23219359 - 23219398
Alignment:
Q  141 attgtgaaagaaaaagaagaatgtcatatgtgacattgtg 180  Q
    ||||||||||||||||||||| ||||||| ||||||||||    
T  23219359 attgtgaaagaaaaagaagaaagtcatatatgacattgtg 23219398  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 30117881 - 30117814
Alignment:
Q  169 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctacacgtca 236  Q
    ||||||||||||||| ||||||||||| ||||||||| | | | || |||||||| |||||| |||||    
T  30117881 tgtgacattgtgattggtcaatatcaccaatgtcacccaactctatatcacccaaatgctacccgtca 30117814  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 2953275 - 2953336
Alignment:
Q  169 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    ||||||||||||||| | |||| |||| ||||||||| | | | ||||||||||||||||||    
T  2953275 tgtgacattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtgctac 2953336  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 3899924 - 3899985
Alignment:
Q  169 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    ||||||||||||||| |||||| |||| ||||||||| | | | | ||||||||||||||||    
T  3899924 tgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagtgctac 3899985  T

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Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 64 - 195
Target Start/End: Complemental strand, 16193890 - 16193757
Alignment:
Q  64 tcggataatatttgggcgacattgtggttggtgacattac-caaccacaatgttacaaa-gtacaaaacgacaaaaaatattgtgaaagaaaaagaagaa 161  Q
    |||||||||| ||||| |||||||||||||||||||||   |||||||||||| ||||  ||||||||| | ||||||||||||||| || |||||||||    
T  16193890 tcggataatacttgggtgacattgtggttggtgacattggtcaaccacaatgtcacaagtgtacaaaactaaaaaaaatattgtgaaggagaaagaagaa 16193791  T
Q  162 tgtcatatgtgacattgtgattagtcaatatcac 195  Q
     | ||  ||||||||||||||| | |||||||||    
T  16193790 agacacttgtgacattgtgattggccaatatcac 16193757  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 91 - 226
Target Start/End: Original strand, 2543769 - 2543896
Alignment:
Q  91 ttggtgacattaccaaccacaatgttacaa-agtacaaaacgacaaaaaatattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtcaa 189  Q
    ||||||||||||||||||||||||||||||  ||  ||||| ||||||||  |||||||||||||| || || | || ||||||||||||| || |        
T  2543769 ttggtgacattaccaaccacaatgttacaagtgtgtaaaacaacaaaaaaatttgtgaaagaaaaaaaaaaaagccacatgtgacattgtggttgg---- 2543864  T
Q  190 tatcactaatgtcaccaaccacaatgtcacccaagtg 226  Q
         | ||||||||||||||||||||||||||||||    
T  2543865 -----ccaatgtcaccaaccacaatgtcacccaagtg 2543896  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 11448190 - 11448121
Alignment:
Q  91 ttggtgacattaccaaccacaatgttacaa-agtacaaaacgacaaaaaata-ttgtgaaagaaaaagaa 158  Q
    ||||||||||||||||||||||||||| ||  || |||||| |||||||| | |||||||||||||||||    
T  11448190 ttggtgacattaccaaccacaatgttataagtgtgcaaaacaacaaaaaaaatttgtgaaagaaaaagaa 11448121  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 369578 - 369523
Alignment:
Q  66 ggataatatttgggcgacattgtggttggtgacatt-accaaccacaatgttacaa 120  Q
    |||||||| ||| | ||||||||||||||||||||| |||||||||||||| ||||    
T  369578 ggataatacttgagtgacattgtggttggtgacattgaccaaccacaatgtcacaa 369523  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 369472 - 369439
Alignment:
Q  197 aatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    ||||||| ||||||||||||||||||||||||||    
T  369472 aatgtcatcaaccacaatgtcacccaagtgctac 369439  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 2543775 - 2543742
Alignment:
Q  192 tcactaatgtcaccaaccacaatgtcacccaagt 225  Q
    |||| |||||||||||||||||||||||||||||    
T  2543775 tcaccaatgtcaccaaccacaatgtcacccaagt 2543742  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 16193853 - 16193881
Alignment:
Q  197 aatgtcaccaaccacaatgtcacccaagt 225  Q
    |||||||||||||||||||||||||||||    
T  16193853 aatgtcaccaaccacaatgtcacccaagt 16193881  T

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Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 31470832 - 31470737
Alignment:
Q  134 aaaaaatattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    ||||||||||||||||||||||||||||||  |  |||||||||||| || |||||| |||| ||||| |||||||| ||||||||||||| |||||    
T  31470832 aaaaaatattgtgaaagaaaaagaagaatgatacttgtgacattgtggttggtcaatgtcac-aatgttaccaaccataatgtcacccaagcgctac 31470737  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 5033246 - 5033312
Alignment:
Q  169 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctacacgtc 235  Q
    ||||||||||||||| |||||| |||| ||||||||| | | | |||||||||||||||||| ||||    
T  5033246 tgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctacccgtc 5033312  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 33763461 - 33763555
Alignment:
Q  70 aatatttgggcgacattgtggttggtgacatt-accaaccacaatgttacaaa-gtacaaaacgac-aaaaaatattgtgaaagaaaaagaagaa 161  Q
    |||| ||||| |||||||||||||||||||||   |||||||||| ||||||| ||| |||   || |||||||||| |||||||||||||||||    
T  33763461 aataattgggtgacattgtggttggtgacattggtcaaccacaatattacaaatgtataaagaaacaaaaaaatattatgaaagaaaaagaagaa 33763555  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 33841644 - 33841583
Alignment:
Q  169 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    ||||||| ||||||| |||||| |||| ||||||||| | | | ||||||||||||||||||    
T  33841644 tgtgacaatgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctac 33841583  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 35441022 - 35440961
Alignment:
Q  169 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    ||||||||||||||| |||||| |||| ||||||||| | | | | ||||||||||||||||    
T  35441022 tgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagtgctac 35440961  T

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Target: scaffold0343 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 12281 - 12370
Alignment:
Q  138 aatattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    |||||||||||||| ||||||||| | ||  |||||||||||| || |||||| |||| ||||||| |  |||||||||||||||||||||||    
T  12281 aatattgtgaaagagaaagaagaaggacacttgtgacattgtggttggtcaatgtcac-aatgtcagc--ccacaatgtcacccaagtgctac 12370  T

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Target: scaffold0161 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 27271 - 27217
Alignment:
Q  171 tgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagt 225  Q
    ||||||||||||| | ||||||||||||||||||| | | | |||||||||||||    
T  27271 tgacattgtgattggccaatatcactaatgtcacccaactctatgtcacccaagt 27217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 226
Target Start/End: Complemental strand, 1847 - 1818
Alignment:
Q  197 aatgtcaccaaccacaatgtcacccaagtg 226  Q
    ||||||||||||||||||||||||||||||    
T  1847 aatgtcaccaaccacaatgtcacccaagtg 1818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 226
Target Start/End: Original strand, 224 - 253
Alignment:
Q  197 aatgtcaccaaccacaatgtcacccaagtg 226  Q
    ||||||||||||||||||||||||||||||    
T  224 aatgtcaccaaccacaatgtcacccaagtg 253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 49756 - 49695
Alignment:
Q  169 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 230  Q
    ||||||||||||||| |||||| |||  ||||||||| | | | ||||||||||||||||||    
T  49756 tgtgacattgtgattggtcaatgtcatcaatgtcacccaactctatgtcacccaagtgctac 49695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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