View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4407-Insertion-7 (Length: 177)

Name: NF4407-Insertion-7
Description: NF4407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4407-Insertion-7
NF4407-Insertion-7
[»] chr1 (5 HSPs)
chr1 (38-140)||(44667676-44667778)
chr1 (8-43)||(44667548-44667583)
chr1 (59-104)||(33326983-33327028)
chr1 (58-101)||(898710-898753)
chr1 (55-102)||(15596733-15596780)
[»] scaffold0029 (1 HSPs)
scaffold0029 (48-108)||(72602-72662)
[»] chr4 (3 HSPs)
chr4 (38-100)||(2011946-2012008)
chr4 (60-104)||(10250348-10250392)
chr4 (55-102)||(2133436-2133483)
[»] scaffold0526 (1 HSPs)
scaffold0526 (38-99)||(9467-9528)
[»] scaffold0154 (1 HSPs)
scaffold0154 (55-104)||(32853-32902)
[»] chr5 (1 HSPs)
chr5 (59-104)||(35583429-35583474)
[»] chr2 (4 HSPs)
chr2 (47-104)||(13837501-13837558)
chr2 (55-110)||(34063075-34063130)
chr2 (56-104)||(37867426-37867474)
chr2 (58-101)||(42444367-42444410)
[»] chr6 (4 HSPs)
chr6 (60-104)||(12170147-12170191)
chr6 (47-104)||(14426387-14426445)
chr6 (47-104)||(7974622-7974679)
chr6 (59-104)||(13240938-13240983)
[»] chr7 (6 HSPs)
chr7 (39-94)||(662819-662874)
chr7 (68-104)||(36251506-36251542)
chr7 (61-104)||(9412418-9412461)
chr7 (55-98)||(27484476-27484519)
chr7 (48-115)||(39522748-39522815)
chr7 (59-102)||(43065922-43065965)
[»] chr8 (3 HSPs)
chr8 (72-108)||(30682317-30682353)
chr8 (61-104)||(11929854-11929897)
chr8 (48-99)||(45356694-45356745)
[»] chr3 (2 HSPs)
chr3 (60-104)||(29626054-29626098)
chr3 (59-102)||(54982864-54982907)


Alignment Details
Target: chr1 (Bit Score: 79; Significance: 3e-37; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 44667676 - 44667778
Alignment:
Q  38 gttttgccccttttgaattgattttttctctttctaaaattacatttaactttcaatacaaataacaaatagagaagactaaattaaagattgttgttgg 137  Q
    |||||| ||||||| ||||||||||||||||||  |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44667676 gttttggcccttttcaattgattttttctcttttcaaaattaccttcaactttcaatacaaataacaaatagagaagactaaattaaagattgttgttgg 44667775  T
Q  138 tgt 140  Q
    |||    
T  44667776 tgt 44667778  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 44667548 - 44667583
Alignment:
Q  8 aaaacaacacatgtcacacagtaaatagaagttttg 43  Q
    ||||||||||||||||||||||||||||||||||||    
T  44667548 aaaacaacacatgtcacacagtaaatagaagttttg 44667583  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 33327028 - 33326983
Alignment:
Q  59 ttttttctctttctaaaattacatttaactttcaatacaaataaca 104  Q
    |||||||||||| ||||||||| || ||||||||||||||||||||    
T  33327028 ttttttctctttttaaaattaccttcaactttcaatacaaataaca 33326983  T

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Target: chr1; HSP #4
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 898710 - 898753
Alignment:
Q  58 attttttctctttctaaaattacatttaactttcaatacaaata 101  Q
    |||||||||||||| |||||||| || ||| |||||||||||||    
T  898710 attttttctctttccaaaattaccttcaacattcaatacaaata 898753  T

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Target: chr1; HSP #5
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 15596733 - 15596780
Alignment:
Q  55 ttgattttttctctttctaaaattacatttaactttcaatacaaataa 102  Q
    |||| ||||||||||||| ||||||| || |||||| |||||||||||    
T  15596733 ttgactttttctctttcttaaattaccttcaactttaaatacaaataa 15596780  T

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Target: scaffold0029 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 72602 - 72662
Alignment:
Q  48 ttttgaattgattttttctctttctaaaattacatttaactttcaatacaaataacaaata 108  Q
    |||||| ||| ||||||||| ||| |||||||| |||||||||||||||||||||||||||    
T  72602 ttttgagttgcttttttctcattccaaaattacctttaactttcaatacaaataacaaata 72662  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 2012008 - 2011946
Alignment:
Q  38 gttttgccccttttgaattgattttttctctttctaaaattacatttaactttcaatacaaat 100  Q
    |||||||| |||||| ||||| ||||||||||| |||||||||  | ||||||||||||||||    
T  2012008 gttttgcctcttttggattgactttttctctttttaaaattaccctcaactttcaatacaaat 2011946  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 10250348 - 10250392
Alignment:
Q  60 tttttctctttctaaaattacatttaactttcaatacaaataaca 104  Q
    |||||||||||| ||||||||  | ||||||||||||||||||||    
T  10250348 tttttctctttccaaaattaccatcaactttcaatacaaataaca 10250392  T

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Target: chr4; HSP #3
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 2133436 - 2133483
Alignment:
Q  55 ttgattttttctctttctaaaattacatttaactttcaatacaaataa 102  Q
    |||||||||| ||||| |||||||||  | ||||||||||||||||||    
T  2133436 ttgattttttttctttttaaaattaccctcaactttcaatacaaataa 2133483  T

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Target: scaffold0526 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 9528 - 9467
Alignment:
Q  38 gttttgccccttttgaattgattttttctctttctaaaattacatttaactttcaatacaaa 99  Q
    |||||||| |||||   |||| |||||||||||||||||||||  |||||||||||||||||    
T  9528 gttttgccactttttggttgactttttctctttctaaaattactcttaactttcaatacaaa 9467  T

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Target: scaffold0154 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 32902 - 32853
Alignment:
Q  55 ttgattttttctctttctaaaattacatttaactttcaatacaaataaca 104  Q
    ||||||||| ||||||||||||||||  | ||||||||||||||||||||    
T  32902 ttgatttttactctttctaaaattaccatcaactttcaatacaaataaca 32853  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 35583474 - 35583429
Alignment:
Q  59 ttttttctctttctaaaattacatttaactttcaatacaaataaca 104  Q
    ||||||||||||||||||||||  |||| |||||||||||||||||    
T  35583474 ttttttctctttctaaaattaccattaattttcaatacaaataaca 35583429  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 13837558 - 13837501
Alignment:
Q  47 cttttgaattgattttttctctttctaaaattacatttaactttcaatacaaataaca 104  Q
    |||||| ||||| ||||||||||||||||| |||  |||| |||||||||||||||||    
T  13837558 cttttggattgactttttctctttctaaaaatacccttaattttcaatacaaataaca 13837501  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 34063075 - 34063130
Alignment:
Q  55 ttgattttttctctttctaaaattacatttaactttcaatacaaataacaaataga 110  Q
    |||||||||||||||| ||||| |||  |||||||||||  |||||||||||||||    
T  34063075 ttgattttttctctttataaaactacccttaactttcaacccaaataacaaataga 34063130  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 37867426 - 37867474
Alignment:
Q  56 tgattttttctctttctaaaattacatttaactttcaatacaaataaca 104  Q
    |||||||||||||||| ||||||||  | ||||||||||| ||||||||    
T  37867426 tgattttttctctttccaaaattaccctcaactttcaataaaaataaca 37867474  T

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Target: chr2; HSP #4
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 42444367 - 42444410
Alignment:
Q  58 attttttctctttctaaaattacatttaactttcaatacaaata 101  Q
    |||||||||||||| |||| ||| || |||||||||||||||||    
T  42444367 attttttctctttccaaaaataccttcaactttcaatacaaata 42444410  T

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Target: chr6 (Bit Score: 33; Significance: 0.0000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 12170191 - 12170147
Alignment:
Q  60 tttttctctttctaaaattacatttaactttcaatacaaataaca 104  Q
    |||||||||||| ||||||||  ||||||||||||||||||||||    
T  12170191 tttttctctttccaaaattacccttaactttcaatacaaataaca 12170147  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 14426387 - 14426445
Alignment:
Q  47 cttttgaattgattttttctcttt-ctaaaattacatttaactttcaatacaaataaca 104  Q
    |||||| ||||| ||||||||||| | ||||||||  ||||||||||||||||||||||    
T  14426387 cttttgcattgactttttctcttttcaaaaattacccttaactttcaatacaaataaca 14426445  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 7974679 - 7974622
Alignment:
Q  47 cttttgaattgattttttctctttctaaaattacatttaactttcaatacaaataaca 104  Q
    |||||||  |||||||||||||||| ||||||||  | ||||||||||| ||||||||    
T  7974679 cttttgaggtgattttttctctttccaaaattaccctaaactttcaatagaaataaca 7974622  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 13240983 - 13240938
Alignment:
Q  59 ttttttctctttctaaaattacatttaactttcaatacaaataaca 104  Q
    |||||||||||||||||| ||  || ||||||||||||||||||||    
T  13240983 ttttttctctttctaaaactaacttcaactttcaatacaaataaca 13240938  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 662819 - 662874
Alignment:
Q  39 ttttgccccttttgaattgattttttctctttctaaaattacatttaactttcaat 94  Q
    ||||||| ||||||| |||| ||||||||||||||||||||  || ||||||||||    
T  662819 ttttgcctcttttgagttgactttttctctttctaaaattatcttcaactttcaat 662874  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 36251506 - 36251542
Alignment:
Q  68 tttctaaaattacatttaactttcaatacaaataaca 104  Q
    ||||||||||||| || ||||||||||||||||||||    
T  36251506 tttctaaaattaccttcaactttcaatacaaataaca 36251542  T

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Target: chr7; HSP #3
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 9412418 - 9412461
Alignment:
Q  61 ttttctctttctaaaattacatttaactttcaatacaaataaca 104  Q
    |||||||||||||||| || ||| || |||||||||||||||||    
T  9412418 ttttctctttctaaaaatatattcaattttcaatacaaataaca 9412461  T

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Target: chr7; HSP #4
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 27484519 - 27484476
Alignment:
Q  55 ttgattttttctctttctaaaattacatttaactttcaatacaa 98  Q
    ||||||||||||||||  ||||||||  ||||||||||||||||    
T  27484519 ttgattttttctctttgcaaaattactcttaactttcaatacaa 27484476  T

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Target: chr7; HSP #5
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 39522748 - 39522815
Alignment:
Q  48 ttttgaattgattttttctctttctaaaattacatttaactttcaatacaaataacaaatagagaaga 115  Q
    |||||| |||| |||||  | ||||||||||||  | |||||||||||||| ||||||||||| ||||    
T  39522748 ttttgagttgacttttttcccttctaaaattaccatcaactttcaatacaattaacaaatagataaga 39522815  T

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Target: chr7; HSP #6
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 43065922 - 43065965
Alignment:
Q  59 ttttttctctttctaaaattacatttaactttcaatacaaataa 102  Q
    |||||||||||||||||| |||  | ||||||||||||||||||    
T  43065922 ttttttctctttctaaaaatactctcaactttcaatacaaataa 43065965  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 30682317 - 30682353
Alignment:
Q  72 taaaattacatttaactttcaatacaaataacaaata 108  Q
    ||||||||| || ||||||||||||||||||||||||    
T  30682317 taaaattaccttcaactttcaatacaaataacaaata 30682353  T

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Target: chr8; HSP #2
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 11929897 - 11929854
Alignment:
Q  61 ttttctctttctaaaattacatttaactttcaatacaaataaca 104  Q
    |||| ||||| |||||||||  ||||||||||||||||||||||    
T  11929897 ttttttctttttaaaattacccttaactttcaatacaaataaca 11929854  T

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Target: chr8; HSP #3
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 45356745 - 45356694
Alignment:
Q  48 ttttgaattgattttttctctttctaaaattacatttaactttcaatacaaa 99  Q
    ||||| ||||| |||||||||||| ||||||||  |||||||| ||||||||    
T  45356745 ttttggattgactttttctctttccaaaattacccttaactttaaatacaaa 45356694  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 29626098 - 29626054
Alignment:
Q  60 tttttctctttctaaaattacatttaactttcaatacaaataaca 104  Q
    |||||||||||| |||||||  || ||||||||||||||||||||    
T  29626098 tttttctctttccaaaattatcttcaactttcaatacaaataaca 29626054  T

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Target: chr3; HSP #2
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 54982907 - 54982864
Alignment:
Q  59 ttttttctctttctaaaattacatttaactttcaatacaaataa 102  Q
    |||| ||| ||||||||||||| || ||||||||||||||||||    
T  54982907 ttttatctttttctaaaattaccttcaactttcaatacaaataa 54982864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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