View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4407-Insertion-9 (Length: 572)
Name: NF4407-Insertion-9
Description: NF4407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4407-Insertion-9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 38 - 572
Target Start/End: Complemental strand, 2575485 - 2574955
Alignment:
| Q |
38 |
ttgagctataagaatatgacattcaatgttatgttgttctctctttcaattttccttcaaaattatgaatgatttgtttaagaaccatcacacagttctt |
137 |
Q |
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| T |
2575485 |
ttgagctataagaataagacattcaatgtt-----gttctctttttcaattttccttcaaaattatgaatgatttgtttaagaaccatcacacagttctt |
2575391 |
T |
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| Q |
138 |
tatgtaccattttgtacactacttacattacaagtctcttgagtcttgattgcattacaattaatggaaaaaacaggtactaggattgaacttgttttgt |
237 |
Q |
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| T |
2575390 |
tatgtaccattttgtacactacttacattacaagtctcttgagtcttgattgcattacaattaatggaaaaaacaggtactaagattgaacttgttttgt |
2575291 |
T |
|
| Q |
238 |
tttatgtgagctacaatacttcaaaacattaacttaatatata-gtttgtatattgctgttaacacttcgagcttatctaataatttgagaccatgagcc |
336 |
Q |
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| T |
2575290 |
tttatgtgagctacaatacttcaaaacattaacttaatatataagtttgtatattgttgttaacacttcgagcttatcaaataatttgagaccatgagcc |
2575191 |
T |
|
| Q |
337 |
ccgcaatgctcaattgctcatgcatgcttttttccgcataatcagctgatactgtcacttataattattctttggttatgggagactccaacattttcta |
436 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
2575190 |
ccgcaatgctcaattgctcatgcatgcttttttccgcataatcagctgatactgtcacttacaattattctttggttatgggagactcgaacattttcta |
2575091 |
T |
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| Q |
437 |
tgtcaccattatttatttaattatgtactactacatatgttgcgtacattggtatgtacaatccctttttcttgcttggattaaaaaagacacttcaaaa |
536 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2575090 |
ggtcaccattatttttttaattatgtactactacatatgttgcgtacattggtatgtacaatccctttttcttgcttggattaaaaaagacacttcaaaa |
2574991 |
T |
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| Q |
537 |
gtatgaaaatgggttttgtttgttaagggtttcttc |
572 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2574990 |
gtatgaaaatgggttttgtttgttaagggtttcttc |
2574955 |
T |
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