View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4407_high_13 (Length: 224)
Name: NF4407_high_13
Description: NF4407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4407_high_13 |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 3197567 - 3197784
Alignment:
| Q |
7 |
ctttcaagtactcttcagcaacttcctccaaagtttttccctcaatgcacgtaacaaatccttcagctatccattgcctagtaagtctcttacaattgat |
106 |
Q |
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| T |
3197567 |
ctttcaagtactcttcagcaacttcctccaaagtttttccctcaacacacataacaaatccttcggctatccattgcctagtaagtctcttacaattgat |
3197666 |
T |
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| Q |
107 |
ggtgtagtgctccggatagataccaaagtacaacatgcataattgtaaatgacacgaaagatcatcataactctgagataaaatcattgttagacgcgag |
206 |
Q |
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| T |
3197667 |
ggtgtggttctccggatagataccaaaatacaacatgcatagttttaaatgacaaggaagatcctcataactccgagataaaatcattgttagacgagtg |
3197766 |
T |
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| Q |
207 |
aaatgcacattgccatct |
224 |
Q |
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|||||||||||||||||| |
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| T |
3197767 |
aaatgcacattgccatct |
3197784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 145
Target Start/End: Original strand, 3309883 - 3309970
Alignment:
| Q |
58 |
taacaaatccttcagctatccattgcctagtaagtctcttacaattgatggtgtagtgctccggatagataccaaagtacaacatgca |
145 |
Q |
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| T |
3309883 |
taacaaacccttcagccatccattgccgagtaagtctcttccgattgatggtgtagtcctcaggatatataccaaaatacagcatgca |
3309970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 201
Target Start/End: Original strand, 3321482 - 3321625
Alignment:
| Q |
58 |
taacaaatccttcagctatccattgcctagtaagtctcttacaattgatggtgtagtgctccggatagataccaaagtacaacatgcataattgtaaatg |
157 |
Q |
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| T |
3321482 |
taacaaacccttctgccatccattgccgagtaagtctcttccgattgatggagtagtcctcaggatatataccaaaatatagcatgcatgatttcaaatg |
3321581 |
T |
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| Q |
158 |
acacgaaagatcatcataactctgagataaaatcattgttagac |
201 |
Q |
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| T |
3321582 |
gtaaggcaaatcatcataactaagagataaaatctttgttagac |
3321625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 219
Target Start/End: Complemental strand, 3201820 - 3201659
Alignment:
| Q |
58 |
taacaaatccttcagctatccattgcctagtaagtctcttacaattgatggtgtagtgctccggatagataccaaagtacaacatgcataattgtaaatg |
157 |
Q |
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| T |
3201820 |
taacaaacccttcagccatccattgccgagtaagtctcttcgtagtgatggtgtagtcctcgggatatataccaaaatacagcatgcatgatttcaaatg |
3201721 |
T |
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| Q |
158 |
acacgaaagatcatcataactctgagataaaatcattgttagacgcgagaaatgcacattgc |
219 |
Q |
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| T |
3201720 |
gctaggcaaatcatcgtaacttagagataaaatctttattagacttgtcaaatgcacattgc |
3201659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 145
Target Start/End: Original strand, 3356616 - 3356703
Alignment:
| Q |
58 |
taacaaatccttcagctatccattgcctagtaagtctcttacaattgatggtgtagtgctccggatagataccaaagtacaacatgca |
145 |
Q |
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| T |
3356616 |
taacaaacccttcagccatccattgcctagtaagtctttttcgtttaatgatgtagtcctctggatacatgccaaagtataacatgca |
3356703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 3303195 - 3303283
Alignment:
| Q |
58 |
taacaaatccttcagctatccattgcctagtaagtctcttacaattgatggtgtagtgctccggatagataccaaagtacaacatgcat |
146 |
Q |
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| T |
3303195 |
taacaaacccttctgccatccattgccgagtaagtctcttccgtttgatggagtagtcctcaggatatataccaaaatatagcatgcat |
3303283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 2837852 - 2837938
Alignment:
| Q |
60 |
acaaatccttcagctatccattgcctagtaagtctcttacaattgatggtgtagtgctccggatagataccaaagtacaacatgcat |
146 |
Q |
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| T |
2837852 |
acaaacccctcagctatccattgcctagttagtctcctatgattaatggagtaatcctctggatatataccaaaatacaaaatgcat |
2837938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 2855062 - 2855148
Alignment:
| Q |
60 |
acaaatccttcagctatccattgcctagtaagtctcttacaattgatggtgtagtgctccggatagataccaaagtacaacatgcat |
146 |
Q |
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| T |
2855062 |
acaaacccctcagctatccattgcctagttagtctcctatgattaatggagtaatcctctggatatataccaaaatacaaaatgcat |
2855148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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