View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4407_high_3 (Length: 384)
Name: NF4407_high_3
Description: NF4407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4407_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 159 - 366
Target Start/End: Original strand, 32786947 - 32787154
Alignment:
| Q |
159 |
ggtttggtttgcatatttccacttcttcctccaaataaacacgatgcatcacaagaagtgcaaatacaaatacaaccaaacttgctattttctttgatgg |
258 |
Q |
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| T |
32786947 |
ggtttggtttgcatatttccacttcttcctccaaataaacacgatgcatcacaagaagtgcaaatacaaatacaaccaaacttgctatttcctttgatgg |
32787046 |
T |
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| Q |
259 |
attgaataagttccacttccccatcacataggccttgaacttcctaaagaaagatccttgattctccattatcatcataattgcatctacattctcttta |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32787047 |
attgaataagttccacttccccatcacataggccttgaacttcctaaagaaagatccttgattctccattatcatcataattgcatctacattctcttta |
32787146 |
T |
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| Q |
359 |
gagtttgg |
366 |
Q |
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|||||||| |
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| T |
32787147 |
gagtttgg |
32787154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 32786802 - 32786878
Alignment:
| Q |
14 |
aatatggtgaggaaaatgcctatttccttaaaggccacacttaatcctttctcacatttaacaccaacaaaccaaac |
90 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32786802 |
aatatggtgaggaaaatgcctatttccttaaaggccacacttaatcctttctcacatttaacaccaacaaaccaaac |
32786878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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